TCONS_00070277 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070277
Unique NameTCONS_00070277
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070277 ID=TCONS_00070277|Name=TCONS_00070277|organism=Clytia hemisphaerica|type=transcript|length=501bp
AATACGactttttattacatttttcaaTAGATTTCAAAGAAGTATAAGAT
TTCACCAAAATTTATAAGGGACAATTCATGGACAATATTCAAGTAAGTCA
GTGAAAATCTTGGAGTTTTTTATACACCGAATAAAGGCTTGTTGGTCACC
ATTATTAACTTCACATTGTTCCGGCTCCAGATTAAGTTTCTCCGTCACTT
CTTCTTTATAGGTCCGGGACAGGGAGGCTTTTCCTAGTCTAAAAATTATC
AGACTAATAATTTTAACAATAACAATATacaaacttgaaaatttcatttc
atttaaaatatCGCTAACAGAAAAATTGTTGTCACTTCCAAAGAAGTGAG
GAAGATAATAGGAGACGTCTATACTGAAACTTTTCCTTTCTCCTCTGCTG
ACGCCACCCACAAGAAGGTAAAACCTGTTCCAATAGCATATAACTGCTGA
GACTGAGTTTGGTCAAATATTATTATggcttttttcttcttgttATAGTA
T
Run BLAST on NCBI

transcript from alignment at scaffold_516:549041..549541

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070277 ID=TCONS_00070277|Name=TCONS_00070277|organism=Clytia hemisphaerica|type=transcript|length=501bp|location=Sequence derived from alignment at scaffold_516:549041..549541 (Clytia hemisphaerica)
ATACTATaacaagaagaaaaaagccATAATAATATTTGACCAAACTCAGT
CTCAGCAGTTATATGCTATTGGAACAGGTTTTACCTTCTTGTGGGTGGCG
TCAGCAGAGGAGAAAGGAAAAGTTTCAGTATAGACGTCTCCTATTATCTT
CCTCACTTCTTTGGAAGTGACAACAATTTTTCTGTTAGCGatattttaaa
tgaaatgaaattttcaagtttgtATATTGTTATTGTTAAAATTATTAGTC
TGATAATTTTTAGACTAGGAAAAGCCTCCCTGTCCCGGACCTATAAAGAA
GAAGTGACGGAGAAACTTAATCTGGAGCCGGAACAATGTGAAGTTAATAA
TGGTGACCAACAAGCCTTTATTCGGTGTATAAAAAACTCCAAGATTTTCA
CTGACTTACTTGAATATTGTCCATGAATTGTCCCTTATAAATTTTGGTGA
AATCTTATACTTCTTTGAAATCTAttgaaaaatgtaataaaaagtCGTAT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043765XLOC_043765Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070277-exon-scaffold_516-1491911889:549041..549541TCONS_00070277-exon-scaffold_516-1491911889:549041..549541Clytia hemisphaericaexon
TCONS_00070277-exon-scaffold_516-1510915933:549041..549541TCONS_00070277-exon-scaffold_516-1510915933:549041..549541Clytia hemisphaericaexon
TCONS_00070277-exon-scaffold_516-1575043694:549041..549541TCONS_00070277-exon-scaffold_516-1575043694:549041..549541Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:549041..549541 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.121499	0.829365	0.137568	0	0	0	0	0	0	0.12682	0	0.161835	0	0	0	0	0	0	0	0.135153	0	0	0	0.253303	0.130448	0.116422	0	0	0.134855	0.274791
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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