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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070281 ID=TCONS_00070281|Name=TCONS_00070281|organism=Clytia hemisphaerica|type=transcript|length=3133bp
gtgaaaataaaataaagaaattagaAAGATGTTAATTATTGCATACGGAG
TGACATCTATATTACTGGTAATTGGGCTTGTGCTTGGGTTTCGATTATGG
CAAGGAAAGAAGAACCAAGTTGTTATCAACAATCCAGCCTTTGtcaattt
ccaacaaaaataTTTCCGTGTTTATTTCCTTGCATTATTAGCTGAATGGC
TACAAGGACCGTATTTATATAAATTGTATCATGATTATGGTTTTGTTGAT
CCTTTCATTGGGATTATTTATGTTTGCGGGTTTGTATCAAGTATTGTTTT
TGGTACATACACTGGTATACTTACTGACCGACTTGGTAGGAAAAAGGTGT
GCGTATTGTTTACTATTTTGTATTCAATATGCTGCTTTACAAAGCtttct
cataatttttttgtattatgTCTTGGAAGAGTACTAGGTGGAGTATCAAC
TAGTTTACTCTTTTCTGCATTTGATTCTTGGTATATGTTTGAGCATACAC
AAGCTTATCAGTTCCCTACAGAATGGATGGATGTCACTTTCTCAAAAGCT
ACCTTTTATAACAGTGTTATTGCAATCACAGCTGGCTTTATTGCTAATTT
GTTATCTGAATGGCTTCAATTTGGACCAGTTGCACCATTTTTATTTGCAA
TACCTTTTCTTGTTGTGGCTGGAGCACTGATCCAAGTCACCTGGTCTGAG
AATCATGGAAGATCTGGCCAAGCATGTAAAGGCTGTTTTGAAGGACTACG
TCTCATTGTTATGAATCGTGGTATCTTCCTTATCGGTGCTGTTCAAGCAA
TGTTCGAAAGTGTCATGtacatttttgtgtttttatggACACCAGTTTTG
CTGCCAGCTGAACCCCCCCTTGGTGTTGTGTTTGCTTCTTTTATGTGCTC
TATATGGATCGGAGGAAGCTTATTTGAACATCTTGtagcaagaaaatata
aaacGACAACAATCNCAAGTTGTTATCAACAATCCAGCCTTTGtcaattt
ccaacaaaaataTTTCCGTGTTTATTTCCTTGCATTATTAGCTGAATGGC
TACAAGGACCGTATTTATATAAATTATATCATGATTATGGTTTTGTTGAT
CCTTTCATTGGAATTATTTATGTTTGCGGGTTTGTATCGAGTATTGTTTT
TGGTACCTACACTGGTATACTTACTGACCGGCTTGGTAGGAAAAAGGTGT
GCGTATTGTTTACTATTTTGTATTCAATATGCTGCTTTACAAAGCtttct
cataatttttttgtattatgTCTTGGAAGAGTACTAGGTGGAGTATCAAC
TAGTTTACTCTTTTCTGCATTTGATTCTTGGTATATGTTTGAGCATACAC
AAGCTTATCAGTTCCCTACAGAATGGATGGATGTCACTTTCTCAAAAGCT
ACCTTTTATAACAGTGTTATTGCAATCACAGCTGGCTTTATTGCTAATTT
GTTATCTGAATGGCTTCAATTTGGACCAGTTGCACCATTTTTATTTGCAA
TACCTTTTCTTGTTGTGGCTGGAGCACTGATTCAAGTCACCTGGTCTGAG
AATCATGGAAGATCTGGCCAAGCTTGTAAAGGCTGTTTTGAAGGACTACG
TCTCATTGTTATGAATCGTGGTATCTTCCTTATCGGTGCTGTTCAAGCAA
TGTTCGAAAGTGTCATGtacatttttgtgtttttatggACGCCAGTTTTG
CTGCCAGCTGAACCACCTCTTGGTGTCGTGTTTGCTTCTTTTATGTGCTC
TATATGGATTGGAGGAAGCTTATTTGAACATCTTGtagcaagaaaatata
aaatgacgacaattgtttgttttgttgtCTATGGAGTCATGTTTGCTAAT
GGTGGAGCAGCTTTTGCTAGTGCTAATCATCCCCGTACCTcgtatttatt
atttttagtgATTGAACTACTTTGTGGTATATACTTCCCAGCTATGGGTT
ACCTGAGAACCAAAGTGTTGCCAGCTGCACATCATGCTGTTATAATGAAC
TGGTTTCGTGTACCGTTGAACGTGATTGCAAGTATAGTGTTATTGGTGTT
ACACGATAGTCATAGCCCACACGGTATCACGCAAATGTTCACACTCTGCG
CATGTCTCTTGATGGTTGGTGGTTTGTTTGCAACGTTATTGAAATTTACG
GTGAATGATAATGAAATGGATGCGAATACAGAAAATGAAGAATTGGCTTA
GATTATCTCTtcaataaaactaaaattttcatttttcttagtTTATTCTG
ATCAAAACAGGATCCTGACTAACTATCAACAAAGTTAACTTATTTGAGAA
TAAGTGGAGTTCCCTGCAAAGTTTTAAACCCCACAAAGGATTTTTAAAGT
GAAATTGCTTACTTCCatttccaaaatcgaaatatccaatgaaatatata
gaaattttgaaattgacattctcgcccAAACTTTGAATTCTGAAAACATT
AAAATTCCCCGAGATATTAATATATCAATctcaaccatgattgtagcttC
TCTTACTcgttaaattttcaaatgtcaaatgtcTTGTTGTGGTGAGTCTA
AGGGTGTATTAGGATTTTATTTGGCAATTGAACTTAAAATAATGTTTTAT
ACATCTAAATCTTTTTTCCGTGGAGAACATAATTAGATATTCTAATAGGT
GACtgtcattttttattattattctttGTATAGAGACAGAATCATTGGTA
GTTTTAGGAGGGGGTACagccgcagggtactaacccatagggtactaacc
cTGATTTACAGAAATATTTGTGTAAGGTACcaccaccccctttttagtac
cTGGCACCTacttttttgaggaaaaagggAATTGGCAAAACTTATATTGT
GACTTGCCAAAATCGATAAATTTATACCCATTTTAGTTTACCAACTAAAT
ACCGATATTAACACTACTTGAAAGAAATGTGATAAATTTAGTatcgggta
ctaacttttttgagattcaaaGTTAGACACCGCCACATGGGTCAGTACTC
TGCGGCTGTACCCTCCCCCCTggtagttttattttttattgaatattaaa
atctcaaaaatagtataaaaaattttaatcaaatattttatttattcttt
tagCAGAAAATATATCCATAGTAATTTGTAGTG Run BLAST on NCBI transcript from alignment at scaffold_52:7995..12318+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070281 ID=TCONS_00070281|Name=TCONS_00070281|organism=Clytia hemisphaerica|type=transcript|length=4324bp|location=Sequence derived from alignment at scaffold_52:7995..12318+ (Clytia hemisphaerica)
gtgaaaataaaataaagaaattagaAAGATGTTAATTATTGCATACGGAG
TGACATCTATATTACTGGTAATTGGGCTTGTGCTTGGGTTTCGATTATGG
CAAGGAAAGAAGAACCAAGTTGTTATCAACAATCCAGCCTTTGtcaattt
ccaacaaaaataTTTCCGTGTTTATTTCCTTGCATTATTAGCTGAATGGC
TACAAGGACCGTATTTATATAAATTGTATCATGATTATGGTTTTGTTGAT
CCTTTCATTGGGATTATTTATGTTTGCGGGTTTGTATCAAGTATTGTTTT
TGGTACATACACTGGTATACTTACTGACCGACTTGGTAGGAAAAAGGTGT
GCGTATTGTTTACTATTTTGTATTCAATATGCTGCTTTACAAAGCtttct
cataatttttttgtattatgTCTTGGAAGAGTACTAGGTGGAGTATCAAC
TAGTTTACTCTTTTCTGCATTTGATTCTTGGTATATGTTTGAGCATACAC
AAGCTTATCAGTTCCCTACAGAATGGATGGATGTCACTTTCTCAAAAGCT
ACCTTTTATAACAGTGTTATTGCAATCACAGCTGGCTTTATTGCTAATTT
GTTATCTGAATGGCTTCAATTTGGACCAGTTGCACCATTTTTATTTGCAA
TACCTTTTCTTGTTGTGGCTGGAGCACTGATCCAAGTCACCTGGTCTGAG
AATCATGGAAGATCTGGCCAAGCATGTAAAGGTNATTAGATAAGACCttg
ttgacagatttttttgGCAGTGTCCACTCTACAGAGATAACAAAACAGTA
TGATTTTGAACTTGAAACCGAAGAAGTCACTGTCACTGAAGACAAAACAA
ATATCAATAAACAACCTAGCAAGAAATATTCTTTTGTTTCCCAGATTCCA
ACATTGTAATATTTGGTGAACTGGATAAGCTttcttgtgaaatatttaag
aCGTTTTGTAAttcttatcattttttttttcaatgtagaaccaaaaatct
tattatttattattttgtttttacccCTGTTTGTCTTTTGTCTTATCATT
TTCTCCTGCcaaatcattttaatttgagCGAAATATTCTTTTAAAGTGGT
TGCTCCACAGTGAAATATTTAATCATTTGATCACAGTATTGAAATAAGGA
TGTTTGAGGactcaaatttcataaatttcttttctttatttagtgaaaat
aaaataaagaaatagaaagaTGTTAATTATTGCATATGGAGTGACATCTA
TATTACTGGTAATTGGGCTTGTGCTTGGGTTTCGATTATGGCAAGGAAAG
AAGAACCAAGTTGTTATCAACAATCCAGCCTTTGtcaatttccaacaaaa
ataTTTCCGTGTTTATTTCCTTGCATTATTAGCTGAATGGCTACAAGGAC
CGTATTTATATAAATTGTATCATGATTATGGTTTTGTTGATCCTTTCATT
GGGATTATTTATGTTTGCGGGTTTGTATCAAGTATTGTTTTTGGTACATA
CACTGGTATACTTACTGACCGACTTGGTAGGAAAAAGGTGTGCGTATTGT
TTACTATTTTGTATTCAATATGCTGCTTTACAAAGCtttctcataatttt
tttgtattatgTCTTGGAAGAGTACTAGGTGGAGTATCAACTAGTTTACT
CTTTTCTGCATTTGATTCTTGGTATATGTTTGAGCATACACAAGCTTATC
AGTTCCCTACAGAATGGATGGATGTCACTTTCTCAAAAGCTACCTTTTAT
AACAGTGTTATTGCAATCACAGCTGGCTTTATTGCTAATTTGTTATCTGA
ATGGCTTCAATTTGGACCAGTTGCACCATTTTTATTTGCAATACCTTTTC
TTGTTGTGGCTGGAGCACTGATTCAAGTCACCTGGTCTGAGAATCATGGA
AGATCTGGCCAAGCTTGTAAAGGCTGTTTTGAAGGACTACGTCTCATTGT
TATGAATCGTGGTATCTTCCTTATCGGTGCTGTTCAAGCAATGTTCGAAA
GTGTCATGtacatttttgtgtttttatggACACCAGTTTTGCTGCCAGCT
GAACCCCCCCTTGGTGTTGTGTTTGCTTCTTTTATGTGCTCTATATGGAT
CGGAGGAAGCTTATTTGAACATCTTGtagcaagaaaatataaaacGACAA
CAATCNCAAGTTGTTATCAACAATCCAGCCTTTGtcaatttccaacaaaa
ataTTTCCGTGTTTATTTCCTTGCATTATTAGCTGAATGGCTACAAGGAC
CGTATTTATATAAATTATATCATGATTATGGTTTTGTTGATCCTTTCATT
GGAATTATTTATGTTTGCGGGTTTGTATCGAGTATTGTTTTTGGTACCTA
CACTGGTATACTTACTGACCGGCTTGGTAGGAAAAAGGTGTGCGTATTGT
TTACTATTTTGTATTCAATATGCTGCTTTACAAAGCtttctcataatttt
tttgtattatgTCTTGGAAGAGTACTAGGTGGAGTATCAACTAGTTTACT
CTTTTCTGCATTTGATTCTTGGTATATGTTTGAGCATACACAAGCTTATC
AGTTCCCTACAGAATGGATGGATGTCACTTTCTCAAAAGCTACCTTTTAT
AACAGTGTTATTGCAATCACAGCTGGCTTTATTGCTAATTTGTTATCTGA
ATGGCTTCAATTTGGACCAGTTGCACCATTTTTATTTGCAATACCTTTTC
TTGTTGTGGCTGGAGCACTGATTCAAGTCACCTGGTCTGAGAATCATGGA
AGATCTGGCCAAGCTTGTAAAGGCTGTTTTGAAGGACTACGTCTCATTGT
TATGAATCGTGGTATCTTCCTTATCGGTGCTGTTCAAGCAATGTTCGAAA
GTGTCATGtacatttttgtgtttttatggACGCCAGTTTTGCTGCCAGCT
GAACCACCTCTTGGTGTCGTGTTTGCTTCTTTTATGTGCTCTATATGGAT
TGGAGGAAGCTTATTTGAACATCTTGtagcaagaaaatataaaatgacga
caattgtttgttttgttgtCTATGGAGTCATGTTTGCTAATGGTGGAGCA
GCTTTTGCTAGTGCTAATCATCCCCGTACCTcgtatttattatttttagt
gATTGAACTACTTTGTGGTATATACTTCCCAGCTATGGGTTACCTGAGAA
CCAAAGTGTTGCCAGCTGCACATCATGCTGTTATAATGAACTGGTTTCGT
GTACCGTTGAACGTGATTGCAAGTATAGTGTTATTGGTGTTACACGATAG
TCATAGCCCACACGGTATCACGCAAATGTTCACACTCTGCGCATGTCTCT
TGATGGTTGGTGGTTTGTTTGCAACGTTATTGAAATTTACGGTGAATGAT
AATGAAATGGATGCGAATACAGAAAATGAAGAATTGGCTTAGATTATCTC
TtcaataaaactaaaattttcatttttcttagtTTATTCTGATCAAAACA
GGATCCTGACTAACTATCAACAAAGTTAACTTATTTGAGAATAAGTGGAG
TTCCCTGCAAAGTTTTAAACCCCACAAAGGATTTTTAAAGTGAAATTGCT
TACTTCCatttccaaaatcgaaatatccaatgaaatatatagaaattttg
aaattgacattctcgcccAAACTTTGAATTCTGAAAACATTAAAATTCCC
CGAGATATTAATATATCAATctcaaccatgattgtagcttCTCTTACTcg
ttaaattttcaaatgtcaaatgtcTTGTTGTGGTGAGTCTAAGGGTGTAT
TAGGATTTTATTTGGCAATTGAACTTAAAATAATGTTTTATACATCTAAA
TCTTTTTTCCGTGGAGAACATAATTAGATATTCTAATAGGTGACtgtcat
tttttattattattctttGTATAGAGACAGAATCATTGGTAGTTTTAGGA
GGGGGTACagccgcagggtactaacccatagggtactaacccTGATTTAC
AGAAATATTTGTGTAAGGTACcaccaccccctttttagtaccTGGCACCT
acttttttgaggaaaaagggAATTGGCAAAACTTATATTGTGACTTGCCA
AAATCGATAAATTTATACCCATTTTAGTTTACCAACTAAATACCGATATT
AACACTACTTGAAAGAAATGTGATAAATTTAGTatcgggtactaactttt
ttgagattcaaaGTTAGACACCGCCACATGGGTCAGTACTCTGCGGCTGT
ACCCTCCCCCCTggtagttttattttttattgaatattaaaatctcaaaa
atagtataaaaaattttaatcaaatattttatttattcttttagCAGAAA
ATATATCCATAGTAATTTGTAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070281-exon-scaffold_52-1491911889:7995..8725 | TCONS_00070281-exon-scaffold_52-1491911889:7995..8725 | Clytia hemisphaerica | exon |
| TCONS_00070281-exon-scaffold_52-1510915933:7995..8725 | TCONS_00070281-exon-scaffold_52-1510915933:7995..8725 | Clytia hemisphaerica | exon |
| TCONS_00070281-exon-scaffold_52-1575043694:7995..8725 | TCONS_00070281-exon-scaffold_52-1575043694:7995..8725 | Clytia hemisphaerica | exon |
| TCONS_00070281-exon-scaffold_52-1491911889:9917..12318 | TCONS_00070281-exon-scaffold_52-1491911889:9917..12318 | Clytia hemisphaerica | exon |
| TCONS_00070281-exon-scaffold_52-1510915933:9917..12318 | TCONS_00070281-exon-scaffold_52-1510915933:9917..12318 | Clytia hemisphaerica | exon |
| TCONS_00070281-exon-scaffold_52-1575043694:9917..12318 | TCONS_00070281-exon-scaffold_52-1575043694:9917..12318 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_52 | supercontig | scaffold_52:7995..12318 + |
Blast
BLAST of TCONS_00070281 vs. Swiss-Prot (Human)
Match: MFSD5 (Molybdate-anion transporter OS=Homo sapiens GN=MFSD5 PE=1 SV=2) HSP 1 Score: 358.607 bits (919), Expect = 3.812e-112 Identity = 190/412 (46.12%), Postives = 273/412 (66.26%), Query Frame = 3
Query: 978 NNPAFVNFQQKYFRVYFLALLAEWLQGPYLYKLYHDYGFVDPFIGIIYVCGFVSSIVFGTYTGILTDRLGRKKVCVLFTILYSICCFTKLSHNFFVLCLGRVLGGVSTSLLFSAFDSWYMFEHTQAYQFPTEWMDVTFSKATFYNSVIAITAGFIANLLSEWLQFGPVAPFLFAIPFLVVAGALIQVTWSENHGRSGQACKGCFEGLRLIVMNRGIFLIGAVQAMFESVMYIFVFLWTPVLLPAEPPLGVVFASFMCSIWIGGSLFEHLVARKYKMT-----TIVCFVVYGVMXXXXXXXXXXXXHPRTSYLLFLVIELLCGIYFPAMGYLRTKVLPAAHHAVIMNWFRVPLNVIASIVLLVLHDSHSPHGITQMFTLCACLLMVGGLFATLLKFTV--NDNEMDANTENEE 2192
+NP+F+ FQ +++VYFLAL A+WLQ PYLYKLY Y F++ I I+YVCG S+++FG L D LGRK CVLF++ YS+CC TKLS ++FVL +GR LGG+ST+LLFSAF++WY+ EH + + FP EW+ TF++A F+N V+A+ AG A ++ W+ GPVAPF+ AIP L +AGAL W EN+ R + C GLR ++ +R + L+G +QA+FESV++IFVFLWTPVL P PLG++F+SFM + +G SL+ +++Y + ++ +V +F + P S++ FL+IEL CG+YFP+M +LR KV+P A ++NWFRVPL+ +A + LLVLHDS G MF++C+ +MV L A + FTV +D E+ + EE
Sbjct: 34 SNPSFLRFQLDFYQVYFLALAADWLQAPYLYKLYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKNSCVLFSLTYSLCCLTKLSQDYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAFWNHVLAVVAGVAAEAVASWIGLGPVAPFVAAIPLLALAGALALRNWGENYDRQRAFSRTCAGGLRCLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGAPLGIIFSSFMAASLLGSSLYRIATSKRYHLQPMHLLSLAVLIVVFSLFMLTFSTSPGQESPVESFIAFLLIELACGLYFPSMSFLRRKVIPETEQAGVLNWFRVPLHSLACLGLLVLHDSDRKTGTRNMFSICSA-VMVMALLAVVGLFTVVRHDAELRVPSPTEE 444 HSP 2 Score: 279.256 bits (713), Expect = 5.368e-83 Identity = 148/308 (48.05%), Postives = 207/308 (67.21%), Query Frame = 2
Query: 29 MLIIAYGVTSILLVIGLVLGFRLWQGKKNQVVINNPAFVNFQQKYFRVYFLALLAEWLQGPYLYKLYHDYGFVDPFIGIIYVCGFVSSIVFGTYTGILTDRLGRKKVCVLFTILYSICCFTKLSHNFFVLCLGRVLGGVSTSLLFSAFDSWYMFEHTQAYQFPTEWMDVTFSKATFYNSVIAITAGFIANLLSEWLQFGPVAPFLFAIPFLVVAGALIQVTWSENHGRSGQACKGCFEGLRLIVMNRGIFLIGAVQAMFESVMYIFVFLWTPVLLPAEPPLGVVFASFMCSIWIGGSLFEHLVARKYK 952
ML+ AY LL L L + K +NP+F+ FQ +++VYFLAL A+WLQ PYLYKLY Y F++ I I+YVCG S+++FG L D LGRK CVLF++ YS+CC TKLS ++FVL +GR LGG+ST+LLFSAF++WY+ EH + + FP EW+ TF++A F+N V+A+ AG A ++ W+ GPVAPF+ AIP L +AGAL W EN+ R + C GLR ++ +R + L+G +QA+FESV++IFVFLWTPVL P PLG++F+SFM + +G SL+ +++Y
Sbjct: 1 MLVTAYLAFVGLLASCLGLELSRCRAKPPGRACSNPSFLRFQLDFYQVYFLALAADWLQAPYLYKLYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKNSCVLFSLTYSLCCLTKLSQDYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAFWNHVLAVVAGVAAEAVASWIGLGPVAPFVAAIPLLALAGALALRNWGENYDRQRAFSRTCAGGLRCLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGAPLGIIFSSFMAASLLGSSLYRIATSKRYH 308
The following BLAST results are available for this feature:
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