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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070284 ID=TCONS_00070284|Name=TCONS_00070284|organism=Clytia hemisphaerica|type=transcript|length=293bp
aagcaaatacgaaaaaaaaagtgaaaatggcAGCCGTGGATACAAACGAG
gttaaaaaggaaaatcaaagtcaacaTGTGAAAATTGACCGGCGGCCGAA
ACGAAAAAAGCCTGGTTTCCACGAAGAGATGTTTGATGAAACAAAGTATT
ACTTTAAGAAAGGACTGCGTTTCGTGTACCCATATCCTTTCACTTTTACT
GCACACATCAAGAAAAGATGGTTGAATTTGAAGTTGATCGAGTTGTTTGA
AAGAGAATTTCACATGGAAACCATCGAATATTATgAAAACGCA Run BLAST on NCBI transcript from alignment at scaffold_52:12570..15819+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070284 ID=TCONS_00070284|Name=TCONS_00070284|organism=Clytia hemisphaerica|type=transcript|length=3250bp|location=Sequence derived from alignment at scaffold_52:12570..15819+ (Clytia hemisphaerica)
aagcaaatacgaaaaaaaaagtgaaaatggcAGCCGTGGATACAAACGAG
gttaaaaaggaaaatcaaagtcaacaTGTGAAAATTGACCGGCGGCCGAA
ACGAAAAAAGCCTGGTTTCCACGAAGAGATGTTTGATGAAACAAAGTATT
ACTTTAAGAAAGGTATTAAATCTTGCacagttttattttgatttcacaTC
TCATCATGTCTTTAAAAGTTTGAGTCTGTTTCCTTTgccttacccttaga
gagaggaatttaaattggcgtttttggaacccttagagagactttcctca
aaatcttttgtcgattttcactcgatttttgtccaaattttggaaaatca
cgaccctttgagagaggaaattttgaatttcgtgatttttggacccttac
agagcctcaattttctttttagtagtttttgcacccctttgagagacttt
cgagggtgtgaaaaaggaaCCCtaatggctcgcacatacccggcaccctt
tttgcctaagtaccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAGGTtctaagtgacgtaaaatcagtcaatacgtcactttcaa
ccaatcagctgttggctccatggaagacattgcaatggtgcatatcatga
atagacagCTCCAGTATTTTAGGCCTTacgacacccctgtgtcacaaacc
cgctgggaccccagccccactggaaaattcggCGACAATTTCGTCCCCGC
TGGAATTTCGGATTTGGAAATTGAATATTCaatgttcaaaaaataattat
acttcaaaaccatcccactggagtttttaaccttggaacaatagaatttc
tatccccattgggatttcaataggaatttttatttctactttggaaaaaa
gttccaccgggctgtgagacaggagtgtttTACGTTACGCTCAAAACGAA
GCAAGATATGATATGATgacttttgacattttcttttatCTTTGTAAATT
TGAACCCGTTCACGTCTTGCTTTGATAGATGCTAAAGTAATGAGTGCACT
ATTATTTGGACTacacgattttttataagaacatccaaaacttttgaagc
cttaagattttcttataaTGCTCATAATGAGTATTCTTTtatgcaatttc
ctaagaaaatgaaattacaatGTTGAAATTAGACTaaattaggcgagacc
aatttgattagttgttttattTTACGGGCTCGACCGACCTGATATtctaa
aaatcgaaataaaaataaaattcatttcggTAGTACattcttattttcat
tgctttacagactgccaaattttcaaaattttggttgttttaccaaggtt
ttcagaattttatgttcgatttttcattttatccatgaattcgacctttt
tgtgttttttttttattttttattctcgTCACGATATTGTGGTTTGTGCT
Gcctttttagaagattttataggtgaaattctaatttttgttttttcgac
GACCGaccggtttttttttcttttttttccttctttataATTTGAGAAAC
TACATTACGCcttcttttttgggtagcttggcccgtaaaataacaaaata
aatttgctTCGCCTTATAGTATTTAATAATTGAACTCAACAAGCCGAAAT
GAATAATATTGACTTGGCGAACATAAGTATAACAGACGTCAACCGTTTGA
TTCGATGAATTGctaaaaaaaggggaaaaggCGATCGGATCCAGTGTTTT
TAGAGTTCattaagtcttaaaatgttcataatattttggccaagatttat
gttcttatatagtttgttcttataaaaaagcgtgtataattataaaaatg
tagtttatgcaaactgatattatcctgTAACatttatcgtattatcatat
aataCCAATATTACTGTATGACGCGGATTATAAACGATTCaagattttct
ttgtttttacagGACTGCGTTTCGTGTACCCATATCCTTTCACTTTTACT
GCACACATCAAGAAAAGATGGTTGAATTTGAAGTTGATCGAGTTGTTTGA
AAGAGAATTTCACATGGAAACCATCGAATATTATGTAAAtctatctttgt
ttttttctcagGTCAACCTGGTTATAgagatttcaactttttaaatctTT
GAGAGAAGTTAACTGTATCACTGAGGCCTTTCAGCAGATTTACTCGTCAT
GTCATGCCATCACGTCATTATTGTAAAATTCTAATTGTGCCATTACGCCA
AAAATGTTCTCCTATTACGCCATCCCACCTTTCTGATGATTTTTTAGGCg
ttgagtccagtgaagtagactagagaaTATTGCCATATCGGAATTTTTga
catacagttgacgctctctaattcgatcttcaaggagaATCGAGTttcca
tcgaataagggagtttatcgaatagtagagcgtcgtttatgagagtttct
tgttgacggtgagtttcaatattatcgaataagggagcgtatcgaataat
agaacgtcgaataagagagcgtcaactgtaattcttttggtcatggtttt
ctgatttcttttctccataaagggactggatctagtgaAATGGATTTGCT
GCTTGCTCAAGCAAAGACAAAAGAAATCTGCCAAATTACACTGAgtcact
tatcagcgccatccagtctatcaaaaagtaATAAGTGGTCCTCGGGCTAA
TCACAGTAATGCTTGATAacatattttgtttgttttttcaggAAAACGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070284-exon-scaffold_52-1491911889:12570..12731 | TCONS_00070284-exon-scaffold_52-1491911889:12570..12731 | Clytia hemisphaerica | exon |
| TCONS_00070284-exon-scaffold_52-1510915933:12570..12731 | TCONS_00070284-exon-scaffold_52-1510915933:12570..12731 | Clytia hemisphaerica | exon |
| TCONS_00070284-exon-scaffold_52-1575043694:12570..12731 | TCONS_00070284-exon-scaffold_52-1575043694:12570..12731 | Clytia hemisphaerica | exon |
| TCONS_00070284-exon-scaffold_52-1491911889:15032..15153 | TCONS_00070284-exon-scaffold_52-1491911889:15032..15153 | Clytia hemisphaerica | exon |
| TCONS_00070284-exon-scaffold_52-1510915933:15032..15153 | TCONS_00070284-exon-scaffold_52-1510915933:15032..15153 | Clytia hemisphaerica | exon |
| TCONS_00070284-exon-scaffold_52-1575043694:15032..15153 | TCONS_00070284-exon-scaffold_52-1575043694:15032..15153 | Clytia hemisphaerica | exon |
| TCONS_00070284-exon-scaffold_52-1491911889:15811..15819 | TCONS_00070284-exon-scaffold_52-1491911889:15811..15819 | Clytia hemisphaerica | exon |
| TCONS_00070284-exon-scaffold_52-1510915933:15811..15819 | TCONS_00070284-exon-scaffold_52-1510915933:15811..15819 | Clytia hemisphaerica | exon |
| TCONS_00070284-exon-scaffold_52-1575043694:15811..15819 | TCONS_00070284-exon-scaffold_52-1575043694:15811..15819 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_52 | supercontig | scaffold_52:12570..15819 + |
Blast
The following BLAST results are available for this feature:
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