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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070294 ID=TCONS_00070294|Name=TCONS_00070294|organism=Clytia hemisphaerica|type=transcript|length=751bp
GTAACAGCATTTTTAATGAAAGGTGACATAAGTGGAGTTGAAATCTCAGA
TGAACTTTTAAAGGAGAAACGTGAGAGATTTGATGGTGCTGAAACTACAA
CGTTGAAACTTGAATATACTTGTGACAACATTATGGATAACGGTCAAAGA
AAGAAATTGATAGGCGTTGCTGATTACATCCACTCATTGCAACAAATACA
AAACAAATCAGGAATTATCTTACAAGATATCAAAATTGTATTTCCTGAAG
GTATGTTGAATCAAATTACTGAAAGTGATTCAGTTGAGAATCTTTTGAAA
AGTCACCATGTTAGCTCTTATGGAAAGAAATTAGTACTGCGGAGAACAGC
GCCCACTGAAGGATGTCTACCCTGGCATGTTGATGGGCCTTACTCTCAAA
CTGTCGTTCAATACACGCTCAACGATGATAAAGAATTCAGAGGAGGTAGA
TTGTGTTATTACACAGAGGATGTAGGCCTGCTTGTTCCTCGCCGTCCTAC
AGGCACCTTGTGTGTACATCATAGAGAGATGCATGCAGTCTCAAAGCTGT
TAAGTGGGGTACGATATGTTTTCTTTGTTGTTGATGATATAAATGATTTG
GGTGAGCAAACTGGAGCAAATATTATCACATTGGAGCAATCAATCATTGA
TACAATGACCGCAACTTTAGGGGTGTTAAAGTAATCTCAATCATACGAAa
aactaggctacgtcatatcttcttaatatttttgtttccaaaaatataca
c Run BLAST on NCBI transcript from alignment at scaffold_52:97040..100292+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070294 ID=TCONS_00070294|Name=TCONS_00070294|organism=Clytia hemisphaerica|type=transcript|length=3253bp|location=Sequence derived from alignment at scaffold_52:97040..100292+ (Clytia hemisphaerica)
GTAACAGCATTTTTAATGAAAGGTGACATAACTGGAGTTGAAATCTCAGA
TGAACTTTTAAAAGAGAAAAGGAAATCTATTCCAAACAGTGCGGAATACT
CCAAATTGAAGATGGAGTACACTCATGAAAGTATAATGagtgaaaatcaa
agaaaaaaattactcgGTGTGGCTGACTACATTCATTCTTTGCAACAAAT
TAGAAGAAAACCTCAGCAGGTTTTACAAGATATTAAAATTATATTACCTG
ATGGTGTGATCAATGAAATTACTCTTGTAAGGTGTATTGAAAAGATTCTG
AAAAGTCACCATCCATCAAACTCAGGTTTGAAACTGGTTCTAAGGAGAAC
ATGCCCAACTGAAGGATGTCTACCTTGGCATGTTGATGGAAGTTATTCTC
AAGGTGTAGTTCAATACACACTTAACAGTGATAACGAGTACACTGGAGGG
AGATTATGTTATTATACTGATGATGTTGGTCTTTTTGTACCGCAGCGATC
AGCAGGTACTCTATCTATACATCAAAGAGAAATACATGCAGTCACCAAAT
TATTGTCAGGTGTACGATATGTCCTTTTTGTTGTTGATGGCACCAATGAT
TTAGGTGGTTCCGATGCAAATATTGTGAAGTTAAGACCAAAACTCTTGGC
AAAAATGAAATCCTCAATGGAACTGTTAGATTGTGATTCAGATGACGAGG
TTGGTGAAAACAGCAATATTAATAAAGTATATTTTGTCTTCATTTCAATC
AACAAAGTTTAAATAGAATATTTTGGAAGGTTATTTAGCAAAATTTCAAG
ACTATGTGCTCTAATTTGCTGTGTAGAATCAATTCCTTCTCAAAcaaaaa
accttgctttgaccactggcATATGACACTCTGCTGCCAGCTATGTACTA
TCAgattgaaaaattgtaaaagctTTTACAGCATAGCTGTAGTAATAGTT
TCCGAAAGATGTGTCCAAAGTTACATCTCAAACTCTTGTTTAGGACGATG
AAAGTGATACGAGAAGTAACAAAAGGGATCAGAAGGAAGACCCAACTCCA
AGTCGTGCGAAACGAGCCAGAAAAAACTGATTCTACTTGATTCTACACAa
ccatttttttatgttttactgTTGACGTTTCTGCTGGATTACTGGGAAAC
CTCACATTGAAAATACCTGAAAATACTCTGAAACACTATTACCACAGTGG
GTGTTGATAACAATCTAAAAATTGTTGTGAGAAGTATGGTTCTACTAGTA
GATGTACATTATATTGTCATATTCTCAAGGTGTAGTTCAACACACACTTA
ACAGCACCAAGGAACTTACTGCAGGGAGATTATGTTATATGCTAATGAAA
TTTGGTCTAATTGTGCTACATTATTGATTACGTTAGTCTGATTGTGCTGT
TATACTGGCAACGTTAGTCTGTTTATACCTCAATGTCCTGAGGTGCAGAC
ACCTTTAATGTACATTGTAGAGAAAAAGTGTTAACTGGGTACATTATTTC
CCGTTTGTTGCTCGTAGAGCAAATTATTTGGGGAGAAGGAACGATGCTCA
TGTTATTATATGGATAAATAAGTCGAAGAATTCTGCAGCAAAGAAGTGAT
ATAGGTGTCTGGGTAGTGTTTGAAACAATGGTGacgtttttagaaaaatc
agtaCCTCTTTTAAGCCTTATAGTGTACTGCAAAGGAATGAAAACCAAAC
TCAAAATGAAATCGTTATGTAATTGTAAATAGGCTTTGAGACCAAGCCAG
tcctttgtttatatttttggaGGACAAAACTACAAGTCTAGTAAAAAACT
GTTCACTTGTTAACACAAGACCTGGTGTTAACAGCTAGAATGATATATTT
ATAGTCTAGAATACAAGCTCcataatcaaaataaaacataacacaTTTTC
ATTAACGATATTTAGACCACTTTACGTGTCTTTTTCAAGTTCATGCTCAA
CGTTGCCAGTATAAAAAGCTCCATAAACaatattcttaagatttttaaaa
tgtacatagtaaaaaaagaaaacactttaTTTACACTTCTTTTGAGATGG
TCAACTCTgtatgtaaattttttgagaacCTCTGTATTCTTAAGAACCTC
TGTGTGTTAGGAAATGTTCAAACCCTGCTCCTGGTGTTATTCAAGTAACC
AAGAGTATGTAGTGTTTTTGCAAGTTTTCCCTTTTATTGCAATATTGATA
ACAAGCATAACAATTCTTATTCCTCCATTTCAGTCATAATGCAGATTTTT
GTACAAACATTAACAGACAAAATAATAACATTGGAAGTTGAACCAAGCGA
TACTATAGATAATGTCAAAGCCAAAATTGAAGAAAAGGAGGGTATCAAAC
CAGACCAACAACGTCTGATTTTTGCAGGCAGACAGCTGGAAGATGGGCGT
ACGATTTCTGATTATAATATTCAATGTAATATGCAGTTGCACTTAGTACT
TCGATTGCGAGGGATGATATCCAATTTCTCTGAATACGATGTCACTGACC
CTGTTACAGCATTTTTAATGAAAGGTGACATAAGTGGAGTTGAAATCTCA
GATGAACTTTTAAAGGAGAAACGTGAGAGATTTGATGGTGCTGAAACTAC
AACGTTGAAACTTGAATATACTTGTGACAACATTATGGATAACGGTCAAA
GAAAGAAATTGATAGGCGTTGCTGATTACATCCACTCATTGCAACAAATA
CAAAACAAATCAGGAATTATCTTACAAGATATCAAAATTGTATTTCCTGA
AGGTATGTTGAATCAAATTACTGAAAGTGATTCAGTTGAGAATCTTTTGA
AAAGTCACCATGTTAGCTCTTATGGAAAGAAATTAGTACTGCGGAGAACA
GCGCCCACTGAAGGATGTCTACCCTGGCATGTTGATGGGCCTTACTCTCA
AACTGTCGTTCAATACACGCTCAACGATGATAAAGAATTCAGAGGAGGTA
GATTGTGTTATTACACAGAGGATGTAGGCCTGCTTGTTCCTCGCCGTCCT
ACAGGCACCTTGTGTGTACATCATAGAGAGATGCATGCAGTCTCAAAGCT
GTTAAGTGGGGTACGATATGTTTTCTTTGTTGTTGATGATATAAATGATT
TGGGTGAGCAAACTGGAGCAAATATTATCACATTGGAGCAATCAATCATT
GATACAATGACCGCAACTTTAGGGGTGTTAAAGTAATCTCAATCATACGA
Aaaactaggctacgtcatatcttcttaatatttttgtttccaaaaatata
cac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070294-exon-scaffold_52-1491911889:97040..97061 | TCONS_00070294-exon-scaffold_52-1491911889:97040..97061 | Clytia hemisphaerica | exon |
| TCONS_00070294-exon-scaffold_52-1510915933:97040..97061 | TCONS_00070294-exon-scaffold_52-1510915933:97040..97061 | Clytia hemisphaerica | exon |
| TCONS_00070294-exon-scaffold_52-1575043694:97040..97061 | TCONS_00070294-exon-scaffold_52-1575043694:97040..97061 | Clytia hemisphaerica | exon |
| TCONS_00070294-exon-scaffold_52-1491911889:99564..100292 | TCONS_00070294-exon-scaffold_52-1491911889:99564..100292 | Clytia hemisphaerica | exon |
| TCONS_00070294-exon-scaffold_52-1510915933:99564..100292 | TCONS_00070294-exon-scaffold_52-1510915933:99564..100292 | Clytia hemisphaerica | exon |
| TCONS_00070294-exon-scaffold_52-1575043694:99564..100292 | TCONS_00070294-exon-scaffold_52-1575043694:99564..100292 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_52 | supercontig | scaffold_52:97040..100292 + |
Blast
The following BLAST results are available for this feature:
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