TCONS_00070299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070299
Unique NameTCONS_00070299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070299 ID=TCONS_00070299|Name=TCONS_00070299|organism=Clytia hemisphaerica|type=transcript|length=807bp
TTAACCATACTAGTGTCCCGCACAAATCACGTATCAACAAAACGAATGCA
GTGAAAACTCTTTATCATTTACTTGCCTTGGAGGCAAAAGAAAGTGCCAC
AAAAGTTCTAAAGGATGGGGTTCTAGTCTGAGGCCTACACAATAGGGTGA
GCAAGATAAAGATTAAAAAGTTGCTGTTTTGATGCACTTTAGTGTACTCT
AGATATCTAAGATTAAGTCAGTGtggtaacttggtctaatgttttCATCT
CCCATCTAATTTAGAGCTATTTTTTCAGGAAGATATTATAAAAGTTTATC
CAAGTCTAAAAATGTTGATCAAAGTGAAAACACTAACTGGAAAAGAAATT
GAGATCGATATCGAACCCAATGATAAGGTTGAAAGAATCAAAGAACGAGT
GGAAGAGAAGGAAGGAATTCCTCCTGCACAACAGAGGTTGATTTTCAGTG
GAAAACAAATGAATGATGAAAAGACAGCTCAAGATTATAAAGTCTCCGGA
GGATCAGTACTACATCTTGTATTGGCTTTACGTGGAGGGTCGTAATTTCG
ATCTTATTATTCCAAATACTCATTGTTGATATTACTTTGCATTGAATGTA
TAACAAAAACATCATTGGGGATGAAGTTATTgtttatttaaaatgaaaag
acaAAAATAGTTTCCCTAGTTTAGACCTTTTGATCAGTAGTATTGATATA
CTTTGTAAATTTTATTGCCTTTTGTTATATATAAATACATTTATGTTTTT
TTAGCATTCTTTAAAAACTGTTCAAGTATTAGGATGAAAGATCCTTTTTG
GCTaatg
Run BLAST on NCBI

transcript from alignment at scaffold_52:182796..186225+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070299 ID=TCONS_00070299|Name=TCONS_00070299|organism=Clytia hemisphaerica|type=transcript|length=3430bp|location=Sequence derived from alignment at scaffold_52:182796..186225+ (Clytia hemisphaerica)
TTAACCATACTAGTGTCCCGCACAAATCACGTATCAACAAAACGAATGCA
GTGAAAACTCTTTATCATTTACTTGCCTTGGAGGCAAAAGAAAGTGCCAC
AAAAGTTCTAAAGGATGGGGTTCTAGTCTGAGGCCTACACAATAGGGTGA
GCAAGATAAAGATTAAAAAGTTGCTGTTTTGATGCACTTTAGTGTACTCT
AGATATCTAAGATTAAGTCAGTGtggtaacttggtctaatgttttCATCT
CCCATCTAATTTAGAGCTATTTTTTCAGGAAGATATTATAAAAGTTTATC
CAAGTCTAAAAATGTTGATCAAAGTGAAAACACTAACTGGAAAAGAAGTA
AGTAAATTTATattagttttaaaaataataCTTTAGGACCAACCACATTC
AGATTGGTTTTGTttgaaataattgtttttctCAAACGATTTACATATTT
CTTGCAAAGTATTTACATAACTATACATTTTATCTTTCAGATTGAGATCG
ATATCGAACCCAATGATAAGGTATGTCCTTTATAAGAGAATCATACATAG
AACACAGTGGGCACCCCCTGGACTCATGAGAGGTTGAGAATTTTCAGATT
TCTAAAGGAAGGTGGGGGTTGAtttgatgagaaatttcaggtgggggtaa
acCTATGTAGGTGGGGATGACTTTTTTCAGGTGGCGGTTATAGATTTTTC
TGTATTTCTTAGTCTTCTTAAATCATTTTTGACACATACTAgaggaaaat
taaaaaacatgcaAAAAAATGCCATCCATGTTGAAAGTTCATTTTATCGA
GGTCCTTAGGTCTTGCAGTCGCAATCAGGTCGAGGTTCGAAGACTTTATA
AATTTATGTAGGGATTGTTGGATAAGGTGGGGGTTCCGATAAGATATTTC
CTTTTGAAGTTCAGTTTGATATGTGTGACATCTCATcccttttttattgt
tttatggTACCAATAATCCATCCTGCTGCTTAGTAGAATAAATTCCTCCA
CTGTGGTCTTTTCATAAAAGAATTTGTCTGATATTTATATATGTTTCTTT
CAGGTTGAAAGAATCAAAGAACGAGTGGAAGAGAAGGAAGGAATTCCTCC
TGCACAACAGAGGTAAGATTGCTTGTGCTTTAGGGCTGTTTCTCttctag
gctgcacgcatcccctctgatgtGCTTTAGGGCTGTTTCTCTtctaggct
gcacacatcccctctgatatgctTTAGGGCTGTTTCTCttctaggctgca
cgcatcccctctgatgtGCTTTAGGGCTGTTTCTCTTCTAGggtgcacgc
atcccctctgatatgctTTAGGGCTGTTTCTCttctaggctgcacgcatc
ccctctgatatgatttgatataggatgcgtatcgtctaaaatatttctgt
cccgtcttttcttttttcttttttgattatgcgtcatagcaatacaatga
cttctttttttctttgttcaatgaatgaaaattaataattatgaaaacaa
cagcacaatgacttcattttttttctttctttgattggatgtgacgaaat
tatgtaaatttatgcaaattttggttaccccaaatttggggtaactctcg
gacgagaatttcatacaagatacgcatcccctataacaaaataaattctg
gggatgcgcgcagcctatTTCTCTTCTGGATGTACATTTAAGAGCAACTT
TCAAAAGACTTCTTAGCTATGTAAAAACTACAAAGGGCAAAATTAGATAG
TTTagttaaatttcattaattttcttGTGCCTTTTTATTTTTCCGCACCT
TTTAGATTTGGGAATGCATGTACCTTTGATTTTTTGTGTATATTTTGTAA
CTTTTGGGATAGTTTTTGAGtgcttttgacaaaaaattaaggTACTTGAT
AGAAGACTCGTGTCTAAAAAAGAACGTGAAGATAAAATTTCTACACATTT
ATAACTTTTACTGTATTTTTGcatcttttaatttttgggcGCTCAAGTAA
ATTAGCCTTTTTTGTNAATTTCTACACATTTATAACATTTACTATATTTT
TGcatcttttaatttttgggcACACTCAAGGAAATTAGCCTTTtttgagc
atgtttttgcatgaaaataaaAGGCGCAGGAAAATTGATGGAATTATTTT
AAGATTACACAAAATATGGTATAACTATTTTTATTATCAGAGAATGCAAA
ACAGAGAAACAGCTATTGTTTGACCACTGTGTTAAAAGAAATAAGAGAAG
AGAACTGTCGACTCCAATTACattatttttctctatttctttTCAGGTTG
ATTTTCAGTGGAAAACAAATGTAAGTCAGAAATGTCAATTATTTGATATC
TACCATGTTCttatacagggggggggggtggacgaaccttttttaaggca
aaaaaatatttttagaaatatggTAATACCCCctagaaaatggcaaaatt
tgcaaaagaagtcttggaaaattattttaacttaAAAGTAAGGGTGGACA
AACAAAAATTAGTCTATTACCgcctggaaattttagattaACCTATGACc
tactggaaaaatgaaaaaataccccCTATAAATTCTTTTCCAATTagccc
cctggaaatgttcgtcctcCCCCCTgtccccctgtatggatataaaatgg
aatgacaCATTCTAATCCAGAAACAAATCATGTATATTCTTCAAATCAGC
TTCTTGATTCTGCCAGTAATACAGGCAACTTTCTGCCTTTCTGTTGTCTT
GAATCTTTCACAGTTCGTTCCCCCCTTAGGTGAGATTATTGTCCTCCCTC
ACCATCccaagggcttttgatgtgttcaacaacactctactcggcgggtg
cgacgccgggtgacggctaggatgacaccttccgaaaaaatgaagaaggg
ggaggggaaatcgaaaattttcatgaaaaaagggGGATGGCAAGGAAGGA
GGATAGTTTAAAAAGAagctgattttacgtcacttacaaccaatcagcta
ttgggtccgtggtGTAATGCCAGAAgttattgcaatggtgcatatcatga
atatattgATTCTTTTGGTTTCATGTTTTGCAGGAATGATGAAAAGACAG
CTCAAGATTATAAAGTCTCCGGAGGATCAGTACTACATCTTGTATTGGCT
TTACGTGGAGGGTCGTAATTTCGATCTTATTATTCCAAATACTCATTGTT
GATATTACTTTGCATTGAATGTATAACAAAAACATCATTGGGGATGAAGT
TATTgtttatttaaaatgaaaagacaAAAATAGTTTCCCTAGTTTAGACC
TTTTGATCAGTAGTATTGATATACTTTGTAAATTTTATTGCCTTTTGTTA
TATATAAATACATTTATGTTTTTTTAGCATTCTTTAAAAACTGTTCAAGT
ATTAGGATGAAAGATCCTTTTTGGCTaatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043777XLOC_043777Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070299-exon-scaffold_52-1491911889:182796..183142TCONS_00070299-exon-scaffold_52-1491911889:182796..183142Clytia hemisphaericaexon
TCONS_00070299-exon-scaffold_52-1510915933:182796..183142TCONS_00070299-exon-scaffold_52-1510915933:182796..183142Clytia hemisphaericaexon
TCONS_00070299-exon-scaffold_52-1575043694:182796..183142TCONS_00070299-exon-scaffold_52-1575043694:182796..183142Clytia hemisphaericaexon
TCONS_00070299-exon-scaffold_52-1491911889:183286..183315TCONS_00070299-exon-scaffold_52-1491911889:183286..183315Clytia hemisphaericaexon
TCONS_00070299-exon-scaffold_52-1510915933:183286..183315TCONS_00070299-exon-scaffold_52-1510915933:183286..183315Clytia hemisphaericaexon
TCONS_00070299-exon-scaffold_52-1575043694:183286..183315TCONS_00070299-exon-scaffold_52-1575043694:183286..183315Clytia hemisphaericaexon
TCONS_00070299-exon-scaffold_52-1491911889:183849..183907TCONS_00070299-exon-scaffold_52-1491911889:183849..183907Clytia hemisphaericaexon
TCONS_00070299-exon-scaffold_52-1510915933:183849..183907TCONS_00070299-exon-scaffold_52-1510915933:183849..183907Clytia hemisphaericaexon
TCONS_00070299-exon-scaffold_52-1575043694:183849..183907TCONS_00070299-exon-scaffold_52-1575043694:183849..183907Clytia hemisphaericaexon
TCONS_00070299-exon-scaffold_52-1491911889:185092..185115TCONS_00070299-exon-scaffold_52-1491911889:185092..185115Clytia hemisphaericaexon
TCONS_00070299-exon-scaffold_52-1510915933:185092..185115TCONS_00070299-exon-scaffold_52-1510915933:185092..185115Clytia hemisphaericaexon
TCONS_00070299-exon-scaffold_52-1575043694:185092..185115TCONS_00070299-exon-scaffold_52-1575043694:185092..185115Clytia hemisphaericaexon
TCONS_00070299-exon-scaffold_52-1491911889:185879..186225TCONS_00070299-exon-scaffold_52-1491911889:185879..186225Clytia hemisphaericaexon
TCONS_00070299-exon-scaffold_52-1510915933:185879..186225TCONS_00070299-exon-scaffold_52-1510915933:185879..186225Clytia hemisphaericaexon
TCONS_00070299-exon-scaffold_52-1575043694:185879..186225TCONS_00070299-exon-scaffold_52-1575043694:185879..186225Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:182796..186225 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
253.802	237.778	341.375	374.137	50.884	37.6171	53.0109	60.3393	81.9902	63.1022	54.156	59.8997	43.9943	38.3128	73.103	65.1828	120.116	104.353	38.029	43.9522	72.3896	72.0172	155.026	143.847	64.143	57.0756	100.06	74.8375	82.245	78.025
Blast
[Close]
BLAST of TCONS_00070299 vs. Swiss-Prot (Human)
Match: NEDD8 (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 9.730e-32
Identity = 71/80 (88.75%), Postives = 73/80 (91.25%), Query Frame = 3 
Query:  312 MLIKVKTLTGKEIEIDIEPNDXXXXXXXXXXXXXGIPPAQQRLIFSGKQMNDEKTAQDYKVSGGSVLHLVLALRGGS*FR 551
            MLIKVKTLTGKEIEIDIEP DKVERIKERVEEKEGIPP QQRLI+SGKQMNDEKTA DYK+ GGSVLHLVLALRGG   R
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGGLR 80
The following BLAST results are available for this feature:
BLAST of TCONS_00070299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NEDD89.730e-3288.75NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
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