TCONS_00070304 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070304
Unique NameTCONS_00070304
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length413

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070304 ID=TCONS_00070304|Name=TCONS_00070304|organism=Clytia hemisphaerica|type=transcript|length=413bp
agaataaaaaaaaatatgaagcTCATAAATATAATATACATGCTCTGGGT
TTCATTTTCGCACACAATTTGTGGGAAAACCAAGAATGataacttgaaaa
agaaattgtttcTACTGAATCTTCCTTTCGCTTCTGCTGTcaacaaagaa
agaaattgCTCACTTGCTCGATCATCACTCGTCAGGAATTTACTTCTTCA
GGAGTTCAATCCCATATACAAGCGTTATGGAGTTGAAGTTCCCAGAGGTT
GTGTTTTCAATTTGAAACAATCAATGTATAATGCACTGGAGGAGAAGAAa
cttgaaacttcaaatggaTTTTGGAAATGTGATGCTTGCGGAAAGAAGTT
TTACACTGAGGAACACATCTACAAACATTTTTATAGCAAACATCAAGACC
TCATCAAAcatgt
Run BLAST on NCBI

protein sequence of TCONS_00070304-protein

>TCONS_00070304-protein ID=TCONS_00070304-protein|Name=TCONS_00070304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
RIKKNMKLINIIYMLWVSFSHTICGKTKNDNLKKKLFLLNLPFASAVNKE
RNCSLARSSLVRNLLLQEFNPIYKRYGVEVPRGCVFNLKQSMYNALEEKK
LETSNGFWKCDACGKKFYTEEHIYKHFYSKHQDLIKH
Run BLAST on NCBI

transcript from alignment at scaffold_52:61870..63530-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070304 ID=TCONS_00070304|Name=TCONS_00070304|organism=Clytia hemisphaerica|type=transcript|length=1661bp|location=Sequence derived from alignment at scaffold_52:61870..63530- (Clytia hemisphaerica)
AGAATAAAAAAAAATATGAAGCTCATAAATATAATATACATGCTCTGGGT
TTCATTTTCGCACACAATTTGTGGGAAAACCAAGGTAAATATATATTTAT
TTATTTATTATTTATTTATTTATTTATTTACTTATTTATTTATTTACTTA
TTTATTTATTTACTTATTTATTTATTTACTTATTTATTTATTTACTTATT
TATTTATTTACTTATTTATTTATTTACTTATTTATTTATTTACTTATTTA
TTTATTTACTTATTTATTTATTTACTTATTTATTTATTTACTTATTTATT
TATTTACTTATTTATTTATTTACTTATTTATTTATTTACTTATTTATTTA
TTTACTTATTTATTTATTTACTTATTTATTTATTTACTTATTTATTTATT
TACTTATTTATTTATTTACTTATTTATTTATTTACTTATTTATTTATTTA
CTTATTTATTTATTTACTTATTTATTTATTTACTTATTTATTTATTTACT
TATTTATTTATTTACTTATTTATTTATTTACTTATTTATTTATTTACTTA
TTTATTTATTTACTTATTTATTTATTTACTTATTTATTTATTTAAACATA
GATACAAACCAAAATAGTAAAAAAGACAGCAAGGCTTTTATGTCGAAGTC
CATTTGGATGTCATCCGCGAAATTAAGTCTCAATGGAAATTTTGAAAGGG
TTTAATCTGCGAAATATTTTTGAACAAAACTCAAAAAATGTCAGACAATT
ACTTTTGAAATGTTATTTCTCCCCTTCTTTACCATTTAGAATGATAACTT
GAAAAAGAAATTGTTTCTACTGAATCTTCCTTTCGCTTCTGCTGTCAACA
AAGAAAGAAATTGCTCACTTGCTCGATCATCACTCGTCAGGAATTTACTT
CTTCAGGTTTGTAGGGGGGGTTTGTTGGGGTTCGAAATACCGTTTTCCTG
TCAAGATTTTTGTTAAATCCCGNGGGTTTGTTGGGGTTCAAAATACCGTT
TTCCTGTCAAAATTTTTGCTGAATCCCGGAATCCCGAAAATTGAAAAAAA
TAATAACACCGTCACACCGGTTTGTACTTTTTGTGAAATCCCGTAATACC
GTACTAAGAAAGGGCCAATCCCGTCACATCGTAAAAGTACAAACCCCCCC
CCTTTGTATGGTAACAATCGAATGAAAATCACAAGGCTTGTCTTGTCTTG
TGTTTGAAATACTAGCTGTTGGTATTGTTGCAAATTATTCTTCACAGATT
TCATAACCAGACATGAAAATTTATTTCGATAGTGATTAAATAATTTCAGA
AATTTATATTGTCAATACCAACAAAAATTAATGTCTCTCTCAATACCTCC
CATACTATCATCTGAATTTTTTCTGAGATTATAATTATAAAACCCAACAA
AAGGCTTACAAAAGTAAAATTGCAAATATATAAATAAATTTTTCCATAGG
AGTTCAATCCCATATACAAGCGTTATGGAGTTGAAGTTCCCAGAGGTTGT
GTTTTCAATTTGAAACAATCAATGTATAATGCACTGGAGGAGAAGAAACT
TGAAACTTCAAATGGATTTTGGAAATGTGATGCTTGCGGAAAGAAGTTTT
ACACTGAGGAACACATCTACAAACATTTTTATAGCAAACATCAAGACCTC
ATCAAACATGT

Coding sequence (CDS) from alignment at scaffold_52:61870..63530-

>TCONS_00070304 ID=TCONS_00070304|Name=TCONS_00070304|organism=Clytia hemisphaerica|type=CDS|length=1233bp|location=Sequence derived from alignment at scaffold_52:61870..63530- (Clytia hemisphaerica)
GAGTTCAATCCCATATACAAGCGTTATGGAGTTGAAGTTCCCAGAGGTTG
TGTTTTCAATTTGAAACAATCAATGTATAATGCACTGGAGGAGAAGAAAC
TTGAAACTTCAAATGGATTTTGGAAATGTGATGCTTGCGGAAAGAAGTTT
TACACTGAGGAACACATCTACAAACATTTTTATAGCAAACATCAAGACCT
CATCAAACATAATGATAACTTGAAAAAGAAATTGTTTCTACTGAATCTTC
CTTTCGCTTCTGCTGTCAACAAAGAAAGAAATTGCTCACTTGCTCGATCA
TCACTCGTCAGGAATTTACTTCTTCAGAGAATAAAAAAAAATATGAAGCT
CATAAATATAATATACATGCTCTGGGTTTCATTTTCGCACACAATTTGTG
GGAAAACCAAGGAGTTCAATCCCATATACAAGCGTTATGGAGTTGAAGTT
CCCAGAGGTTGTGTTTTCAATTTGAAACAATCAATGTATAATGCACTGGA
GGAGAAGAAACTTGAAACTTCAAATGGATTTTGGAAATGTGATGCTTGCG
GAAAGAAGTTTTACACTGAGGAACACATCTACAAACATTTTTATAGCAAA
CATCAAGACCTCATCAAACATAATGATAACTTGAAAAAGAAATTGTTTCT
ACTGAATCTTCCTTTCGCTTCTGCTGTCAACAAAGAAAGAAATTGCTCAC
TTGCTCGATCATCACTCGTCAGGAATTTACTTCTTCAGAGAATAAAAAAA
AATATGAAGCTCATAAATATAATATACATGCTCTGGGTTTCATTTTCGCA
CACAATTTGTGGGAAAACCAAGGAGTTCAATCCCATATACAAGCGTTATG
GAGTTGAAGTTCCCAGAGGTTGTGTTTTCAATTTGAAACAATCAATGTAT
AATGCACTGGAGGAGAAGAAACTTGAAACTTCAAATGGATTTTGGAAATG
TGATGCTTGCGGAAAGAAGTTTTACACTGAGGAACACATCTACAAACATT
TTTATAGCAAACATCAAGACCTCATCAAACATAATGATAACTTGAAAAAG
AAATTGTTTCTACTGAATCTTCCTTTCGCTTCTGCTGTCAACAAAGAAAG
AAATTGCTCACTTGCTCGATCATCACTCGTCAGGAATTTACTTCTTCAGA
GAATAAAAAAAAATATGAAGCTCATAAATATAATATACATGCTCTGGGTT
TCATTTTCGCACACAATTTGTGGGAAAACCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043780XLOC_043780Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070304-proteinTCONS_00070304-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070304-exon-scaffold_52-1575043694:63447..63530TCONS_00070304-exon-scaffold_52-1575043694:63447..63530Clytia hemisphaericaexon
TCONS_00070304-exon-scaffold_52-1575043694:62625..62741TCONS_00070304-exon-scaffold_52-1575043694:62625..62741Clytia hemisphaericaexon
TCONS_00070304-exon-scaffold_52-1575043694:61870..62081TCONS_00070304-exon-scaffold_52-1575043694:61870..62081Clytia hemisphaericaexon
TCONS_00070304-exon-scaffold_52-1510915933:63447..63530TCONS_00070304-exon-scaffold_52-1510915933:63447..63530Clytia hemisphaericaexon
TCONS_00070304-exon-scaffold_52-1510915933:62625..62741TCONS_00070304-exon-scaffold_52-1510915933:62625..62741Clytia hemisphaericaexon
TCONS_00070304-exon-scaffold_52-1510915933:61870..62081TCONS_00070304-exon-scaffold_52-1510915933:61870..62081Clytia hemisphaericaexon
TCONS_00070304-exon-scaffold_52-1491911889:63447..63530TCONS_00070304-exon-scaffold_52-1491911889:63447..63530Clytia hemisphaericaexon
TCONS_00070304-exon-scaffold_52-1491911889:62625..62741TCONS_00070304-exon-scaffold_52-1491911889:62625..62741Clytia hemisphaericaexon
TCONS_00070304-exon-scaffold_52-1491911889:61870..62081TCONS_00070304-exon-scaffold_52-1491911889:61870..62081Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:61870..63530 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.26084	4.07016	2.55983	1.92646	15.9479	9.63701	11.1795	12.7686	7.91376	8.7133	6.6954	7.76017	6.82408	7.80758	5.23386	5.72271	4.69994	5.62017	2.58819	4.83635	5.0444	5.41306	3.19044	4.53214	9.89616	10.9984	4.29238	2.79947	4.43962	4.52327
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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