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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070306 ID=TCONS_00070306|Name=TCONS_00070306|organism=Clytia hemisphaerica|type=transcript|length=1950bp
CGGAGGGTTCCCTCTGACGTTCTATcgcagcgccatcattcaaatcagaa
agcgaagatagtatatgACAGATTTTCTGACTATTACGTAGGATTGCTGC
CCAACGGCAACGcaactgaaaaaaataagaacccTTACATAATTGAAATA
ATAATTGAATACTTACATACTTTACCTCTTTGTCGTTCTAATCAGTAAAA
TACAGAGATAGATGTTcataaaatttaaagtaaaataaaaattaaagtaa
atttagaatttaaaaaaggaagaaaattttttttcattgccCCCGCGGCT
TGTGGTACCATTTTTGTCTTACTTCTTAGAAGTCGTTATGCCGGTACCga
ttgatatcgaaagtgaaagaaTGATTTCAAGTTGGCCGACAAAACTCTTC
AATGCAAATATCTGTTTCGTATGATGGCTAGCGTTCCTGGTACACACGTA
ATATCtactttgaaaacaaaatatccACTTTGGTGGTTTGTTTTGGCCAC
GAAAGATTCCCGTGGACAAAATCTGAAAACGAAAGGACTTTTTATGTTGG
TGttgatttttggaatttgatTAAATTACGTGGAAGTAATCCACTGATAT
CTTGTAAATCTAGTCGAAATTTATAGGTAGCAAAGATGTTCAAGTATCTG
ACACTTCCACTGTTACTTGCAGTACTATTATTACCAACGAGTCTGGTATT
TGTTGGCAGAGTTTCTGCTCAAGAAGATGCAGTAGAGGATGAGGTTGTAG
CTGAGGAAGGAGAAGATTCCAAAGTGGAAGCTGAAGATGAAGAACCTGCT
GCCGAAGAAACCTCTCCCACTGGAAAAGATGCAGAGGATGAAGAAGAACA
AGTTGGTGGAGTTAGAATGACTTCAGATGCCGTCACCTCCGTTCTTTTCC
CTGATTACCCTGAAAAAGaTTTACCTGCTGGCAAACCACTTCATCTTTTG
GTTGGTCTCCAAAACAAAGGAGAGAAAGAATTCACCATCCAAACAATCGA
TGCTTCGTTCAGATATCCACAAGATTATAATTACTTCATCCAAAATTTCA
CTGCTATTTCGTACAACTCAGTTGTTGAACCGGGAAGTGAAGCAACCTTT
AGATATTCATTTTTCCCACATGAAAGTTATGGTGGACGTCCATTCGGTTT
GACCATCCTCATGTTCTTTAAAGATACCGATGGCAACCAGTACGGTGCTG
GAGTTTTCAACGAGACCGTCACCTTAAAAGAATTAGATGAGAATTTCGAT
GGAGAAACATTTTTCCTTTACGTTTTATTGGTTGCCGTTGCTCTTTTGGT
TGTATTTGGTATCAATTACGTCGTCTCTAACAAGTTCAAAAGATCGTCTT
CCAAACCTAAAACAGAGACTGGGACGACCAACGACAAAAATGACGTCGAT
TACGATTGGTTACCAAAAACCACCACCGATTTCAAAGCCTCACCCCGACG
TCAGTCACCAAGGCAACGACGCGTCAAAAGATCGACCGGATCCGGCGAGG
AATAATAATCATGCAATTATTTATAAATTAATTTCAATTCAATCTGCATT
AATCAAATGCAGGAGCATGTTTCACGCTCCTTGCCTTTTTGATCTCTCCC
tcgattattttattttaggtGAGTGTTTTTATCCGAGTGgggttttcaag
aaaaaatcaaaaagatctTTCGGCGAACTTTGTCCGTTTAAATCATTAAA
CCaagtttttaacaattttgtatcGAAGAATTTCTTGTGAAGATTTCAAA
CCCTTTAATTCTaattttagtcttttttatattcattgaaaaattaaaaa
gttcacATTGTAAAGCTTAGAACggttttttttcataatattttaATATC
GTCTCTCACATTGTATATATGCGAGCTATTTTTTGCATATTGTAGTTAGC
TTTATTACGATACAAAATTAAAtggaaacaattaaaaaaaggaATGGGAA Run BLAST on NCBI protein sequence of TCONS_00070306-protein >TCONS_00070306-protein ID=TCONS_00070306-protein|Name=TCONS_00070306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp
MFKYLTLPLLLAVLLLPTSLVFVGRVSAQEDAVEDEVVAEEGEDSKVEAE
DEEPAAEETSPTGKDAEDEEEQVGGVRMTSDAVTSVLFPDYPEKDLPAGK
PLHLLVGLQNKGEKEFTIQTIDASFRYPQDYNYFIQNFTAISYNSVVEPG
SEATFRYSFFPHESYGGRPFGLTILMFFKDTDGNQYGAGVFNETVTLKEL
DENFDGETFFLYVLLVAVALLVVFGINYVVSNKFKRSSSKPKTETGTTND
KNDVDYDWLPKTTTDFKASPRRQSPRQRRVKRSTGSGEE Run BLAST on NCBI transcript from alignment at scaffold_52:159104..169065- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070306 ID=TCONS_00070306|Name=TCONS_00070306|organism=Clytia hemisphaerica|type=transcript|length=9962bp|location=Sequence derived from alignment at scaffold_52:159104..169065- (Clytia hemisphaerica)
CGGAGGGTTCCCTCTGACGTTCTATCGCAGCGCCATCATTCAAATCAGAA
AGCGAAGATAGTATATGACAGATTTTCTGACTATTACGTAGGATTGCTGC
CCAACGGCAACGCAACTGAAAAAAATAAGAACCCTTACATAATTGAAATA
ATAATTGAATACTTACATACTTTACCTCTTTGTCGTTCTAATCAGTAAAA
TACAGAGATAGATGTTCATAAAATTTAAAGTAAAATAAAAATTAAAGTAA
ATTTAGAATTTAAAAAAGGAAGAAAATTTTTTTTCATTGCCCCCGCGGCT
TGTGGTACCATTTTTGTCTTACTTCTTAGAAGTCGTTATGCCGGTACCGA
TTGATATCGAAAGTGAAAGAATGATTTCAAGTTGGCCGACAAAACTCTTC
AATGCAAATATCTGTTTCGTATGATGGCTAGCGTTCCTGGTACACACGTA
ATATCTACTTTGAAAACAAAATATCCACTTTGGTGGTTTGTTTTGGCCAC
GAAAGATTCCCGTGGACAAAATCTGAAAACGAAAGGACTTTTTATGTTGG
TGTTGATTTTTGGAATTTGATTAAATTACGTGGAAGTAATCCACTGATAT
CTTGTAAATCTAGTCGAAATTTATAGGTAGCAAAGATGTTCAAGTATCTG
ACACTTCCACTGTTACTTGCAGTACTATTATTACCAACGAGTCTGGTATT
TGTTGGCAGAGGTAAGACTCCAAGGAAAATAACTTGTAAAAGTTTATATT
GGGAGCTCTTTTATGATACCTATGTCAACTCTGTCTATTTTTATGATATT
TTGTGATATTACTATTCCATTCCATCTTTTTTCGAGTGCTCACTGACAGG
TAGATAGCTATGCATTATTAATCAAACAGGATTATTTCAATCAATTGATC
ACTTTCTATCTAAAAAATCTGACCCTTTTCTAGTCAGAAAGTCAGAAAAT
TTCTTATCAGCATTCGGTCGATAAGCTTCAGACCACCTCCCCCACGTGCG
TTTGCTTTGGGAACGCGAACGCGAACTACCAATGTTTTTAACTTTTCAAT
ATATATATCACCAGAAGTAACAGATTTTTTGAAATTCTGTAAAAAAGTCC
AAGTTCCTTAATAGTTTTACTATGTTCTCACGTGCGTTTGCGCAGGGTAA
AATGGCGAAATGCGAAAATCGATTTTGGCAAATTTTTTTTGAAAAACGAC
CCTACAGGATTTGAACTATATTTTTTTATTCCATGAAGAGATTACTGTCA
AATAAAAAATATATTGACCATGAATGGGTAAGCTTTCTAGAAATCCAAAC
ATAAATTGCATAGCTTTTACCAAAAAATAGCACTTTAGGATCAGAAACAG
TCAAAAACCAGCTTTTTCCAATTTTCTTTGAGTTACAGGAATTAAATCCT
TGTTTGTTTTGATCTGAAATTTTCAGTAGAGGTGGCCAACATGGTTCCCT
TGCTCATATATCAGGGGGGTGAGACGGGGGAAAGAGAATTAAAGTTTCTA
AGTAAAATATTAATTATCACCCAAAAAAGTGCCTAGTTTTCTGTCCATAT
CTTTTAAATAGATTGTCCCAGCCTTATCCCTCTTTCAGTAAATTGAATTG
AATTGAATATATTTTCGCTGCAACACAGCAGGATAACCCCTTACAAAAAA
AAATAGATTTCTCTAATACAATGGGGAACCTAGAANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNACGATTATCATAATATTAATAGTGACAACAAAATAGTGAATATA
AGAAATATTTTTACTTTTATTTTATGACAATTTCTTTGAGTAGATTTATC
TATAAAGTTTTTCCTGTTACACCACCCACCCCTCCCACCCTGGAAAAATA
CACTAAGTTCACGCACACGCAATACACGTACACACAGACACACACACACA
CAAAGATTATTCGTCTTCAGCTTTGTATTTGTCTAAATAGAATTTTGTAG
CTAAAGATTTTAGTTCATCAGTATCAAGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCTTCCTATACCTTTTGTCCTTCAGAAAAACCAAA
AATATTGGCCTTAATTGCTTGCTTTCAGTTCCTGTAGCCAATAGTGTGAC
CCCCTGTATTTCTATTTTAATTCGCGCGGGTTTTTAATAGAGATGTCACA
TGACTCAAATCCTGCAGTCTTATTGGACTAGAGAAAGTAAAAGTGAAATC
GCGCGATCTGATTGGATGAAAAAAAGACCGCAGGAGCTGGAAACAAATAG
AATTCTCTAGAATTCTTTAGAATTCTCATTTGAAAACAAGATGGCGGCAA
GAAAAGCATGTCTTTTGCTTTGGACGAAAGGTTGTAAATTCTGGTTGATT
TTAAGGTTTTATCTTATCTTATCTCATTTACTTTAATTAGTAGAGGCTTC
TTCAATGTTTGGGGAAGGTAAGACTATAAAAGTTATTTGTTTTTCGGTGG
AAAAAAGTGTTTAAAAAGCATTTTTTGTGTTCAAGGTTTATTTTTCTTCG
CAAATTTTTGTCTTGATTTTTTCACAGAACATAGTAAAACTATTCAGGAA
CTTGGATCTTTTTACAGAATTTCAAAAAATCTGTTAGTTCTGACAGGGGG
GCACGCAGTTACTACAAGACAGTATGACACTTACTACCGTGGTGGTACTG
TATTTAGAAGTTATGAAAACAGTTACTACACAGTGTAGTAACTGCTGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAGTGTTGAAAAAGCACTTACTACA
CATCATGTCTTGTAGTAACTGCGTGTCCCCCCCCCCTGGTTCTGGAGATA
TATTGAAAAGTTTAGACACGTTCATGTTTCGCGTTCCCAAACCAAACGCA
CATGTTCTGTGAAAAAATCATAACCATCAGTGAAATACTCGTTCATCTAT
TTTGTGTTTAAGATTGAAGACAAAAATTTGCGAAGAAAAATAAACCTTGT
GCTCAAAAAATGCTTCTTTATTAAACACTTTTTTCCACGGAAAAACAAAT
AACTTTTATAGACTTACCTCTCCCAAACATTGAAGAAGCCTCTACTAGTT
AAAGTAAATGAGATAAGATGAGATAAAACCTTAAAATCAACCACAACTAA
GGCCAATATTTTTGGTTTTTCTGAAGGACAAAAGGTATAGGAAGCTTTAC
TGAAGGCGGCATAAGGCTGGGACTAACTATTTAAAAAATATGGGCAAAAA
AAGGCATTTTTTGGGTGATTATTAAGATTTTACTTAGAAACTTTAATTAT
CTTACCCCCATCCCATCCCAACCATGTTGGCCACCCCTACTGAAAATGGA
AAAAAAGAGTTTTTTTATCAAAGTCAATTCAAAACTGTACTTTTGAAGTT
GAAAATTTGTGCACGAAGGTGAAGGCAAGTAAAATTGCATGCTTTCAGTG
GAGTTTGTGGACGAAATCAGAATGAAATTGGCTGAAAGGATTCTTGTCCC
AATATTTGTTTTTTTATCAGTATGTAGCTCTATCAAACACAATCAAAAGC
AATCCGATTTCAATCAAATCTGAAAATTGTGATAATATTCCAGACCTGAT
CATTACACCTTTCCTGTAATTCAAATTTCTCAGAAATGGTCCGTGGAAAT
GTGCGCTCCATTGTTGTGTATAAAATTGATTGGCAGGTAAACATTCGTGG
TTTAGCCTGGGGCTAGGGAAAGTAGGTCTTCAGCTTTAAACTTTTGATAG
TGATCTTTTTTGGCAAAAAAAATTTCAGCATGGTATAATTATACAGTTTT
TCAGTAACCCCCACCTAAATTTGTAAAATCTTCGAACCCCCACCTGAAAA
TTCAGTTTATCCTTTTTTCCTTTAGGAAACATATGTCATAGGTAATGGAT
ATAAAGAGATGTGCTTTGTTTGAACACTCACTCATTAAAATTTAGTCATC
TGTTTATATTTTTATCTAGTATACTGGCTAGTATAGTATGTGGAAAGTTG
AAAAAGACAAAAAAGTACAAAATCAAACATGGTTAAATACAGAAAACTTG
ACAACCCCCACCTGAAAAATGTTACCCCCACCTATATAGGGTTACCCCCA
CCTGAAATTTCTCATCAACCCAACCCCCACCTATTTTTAAAAATCTGAAA
ATCCTCACCCCCCCCCCCAAGAATCCAGGGGGGGGTGCCCACTATGTTTA
ATTTGAGAGGATTTTGATTGTCAGAGCTTAAGAGAAGCTAAAAACTAACT
TTCCCTAAGGAAACACAGGCAAAAACAGGTTTGTTTACCTCCAGAGACTA
AACAGTGGAGAGTATCAAAATAATGCGCGCGCATTAGTTTTGCGAGAAAA
GGGAAAGGTGTATTAACTTGTTGATCCAATGGGCAGTTCTAGTTATAGTC
AGTTACCCCCTGTGGAAAACATAGATTTTCCGTAACAATTCACCTTTGAA
AAACTTTAGGATAACCGTTACATTCAAGATTTTTTAGGGAAAATTCCTAG
ATTTTCCAATACCTGACAAGAAAATAGAGCAAATCTTATGGATTTTCCCA
ATACTTGATAGCTAAATGAGGAAGAAAGACCCTGAATCTTCCGTACCCTG
TCTTAATTTTTTTAGATTTCCAAGTTAAAAAAATTTCCAAAAATCCCTGT
CGTCCACAGGGGGTAAATCATTTTTTTCTTAAATTTCCGGGCAAAAATGT
CAAAAATATAACAGAAAAAACTCTTTTTTGGCAATTTTTTGAGATTTCAT
CAATTGTTTAATGTACTTTTGCATTTTATACTATTTTGCCACTTTGTCAA
TTGTTTTATTAAAAACCTTATTGAATTTTTTTTCGTTTCTCTTCAGTTTC
TGCTCAAGAAGATGCAGTAGAGGATGAGGTTGTAGCTGAGGAAGGAGAAG
ATTCCAAAGTGGAAGCTGAAGATGAAGAACCTGCTGCCGAAGAAACCTCT
CCCACTGGAAAAGTAAGATCCTTTTTTAGTTCTTGATGACATTTCAGCTG
GCCATGTCTAAGAAAGACAGGATGTTGTCACTCTTTCAGCCAAAATGGCA
TTTTTCACATTGTTTTCTAACCAAAAAAACAAAAAATGGAGGAGAACCTT
TGCAAAAGCTGGGCTCGACAGGATCCATTTTCTGACAAAATGGTCACTTA
AATGGTTACAATGAAACAGAAAGGCAATTAAAACCTATAAGCTATAAACA
AGCGTCTCTTTAAAACAAATTGCAACATTTTCAAATACGTAAATAATATT
AGTTTTTGACATACACACACAAAGGTTTCTATGTGTAATCTGTCTAATCG
TGTTCTGACACGGGACTTTTTTTGGGGCATCATCCTGTACAGTTTGGGCA
ATGGACCAGTGAAGAAAATGTCTACCAAGTTGTTTTTGGGAATCTAGTTT
TGTCCACCCTTTCTATCTTGGTACAAATTTGAAATGTGCCTTCAATTTAG
GTAGACAGCCCCTGAATGTCCAGGAAATACCCTGTAAAATCCTGCCATTT
TGACCAGAAAGCAAAGTAACACCCAAAATTCAATATTCTTTAACGTTTTA
TTTTTACATGAGATTTTCATATCAGGCACATGTTTCCTGTCTATTGTTAT
CGTGCTAATATAAGCAAACAAATGTATTTCTTTTCCTTCTTTTGACCAGG
GGGGGGGGTCAGTACTAAAATGTAAGACATACATGAGTACTAAAAGGATT
TTCGCTAATTTTTGACATACCCCCACCTATTTTTCGAAAATGTTGTTTTA
GTACACAGTGTACTAAAATTATTTTGAGCAATTTAACATAGATACCACCC
ATTTTTTGCCCTTTTACGGCTTTAAATTTACCAAAATGGGGTCATTGTTA
CAAACCTAGTCGAATTTAGTGCATCAATCTGCAAAATAATATAATGTTAT
TACTAAACTGTGCTAAACTGTACATAAAAATATTTTTAAAAAATATTTAA
AAAATTAGAAAAATTCTGAAAGATTTTTGAAGATTTTTTCGAAAATTCCT
GAAAAAAAAATCAAATGTTTTCCAAAACTGTTAAAAAAATGCTCCATTTT
GGCTGATTTTAGAACAAAATACTAAGATTTTTCAAAAATTTCTTTAAGGG
ACCACCCTTTTTGGTATTTTAGTACACATGGTAGTGTACTAAAATTATTT
TTGAGCTTTTTTGCAGTACCACCACGTCACTAAATGTCATGATGTCTGAG
ATTTTAGTACCGACCCCCCCCCCTGTTTTGACCAATCTTGCTCCATATCC
GTGTCAATTTATTATCAAAAAGCTTGTAAATTAAAGTAAGCATACAATCT
GAAACGATATCACTCTCATTTAAAAACAAAACCTTTAATATATCAATATA
GAATTCTCTGGAAATGGTAAAGGCAAAGGAGGTTATAAAGCCCCTACCAA
AAAATGTCCTAGATATTTACCTCCCTTGAAACATTTTCCATTTTTGGGCC
ATTACTGCTTTTTTAGTCCAAATACCTGCATACCTGTTGAAAATCACAGT
GAACCTGTTGAATTTACAGCCTTGCCCACCCAACTTACTAGTAATAACTT
GTTTTTGACTTGCCAATTCAACCACCCAACCGTCAGTGGTCCCTACAACC
TGCATCATTTTTCAGCTTGAGATCTCTTTCAGATTCTGGCTTACTTTTCA
ACAAATACTTTTATTTTTTAAGGGGTTCCCTCCAAATTTGCGCAAATTTT
TGCATGCTACCTCACATTAATGGACTAGGAAGGTTGTTGTTTGACACGTG
AGATTAAATGAAACCTTCTCTTTTTTTAAAGGATGCAGAGGATGAAGAAG
AACAAGTTGGTGGAGTTAGAATGACTTCAGATGCCGTCACCTCCGTTCTT
TTCCCTGATTACCCTGAAAAAGGTTTGTACCCTTTGTTTCAACTTTCTTT
TAATTTCTTTAACAGATTTCATTTCATAGGTTTTTCAATTGGTTTTGTCA
AACTGTATTTATTGTAATACATCTGGGATTTGTTGGCCTTAAAATCCATC
ATGAATTACAGGTTTCTACATGATTTTGAATACATGTCTTTTTTTAAGCA
TACTTTTTTTTGGAATAAAGGCTTGGGAAAAAGGATTCAAAAAGAACAAT
GAATCTTCCCAAATGAACAAGCAATGACCAAAACTGACTGGTATGCTTGC
TTTTTTCACCAAATCCACGTGTTAGTATGCTTATAAAAAGAGGATACGCG
TCAAATTATGAAAACATACTTTTTTTTAAACGCTCCATTTTCTTTTTCAC
AGATTTACCTGCTGGCAAACCACTTCATCTTTTGGTTGGTCTCCAAAACA
AAGGAGAGAAAGAATTCACCATCCAAACAATCGATGCTTCGTTCAGATAT
CCACAAGATTATAATTACTTCATCCAAAATTTCACTGCTATTTCGTACAA
CTCAGTTGTTGAACCGGGAAGTGAAGCAACCTTTAGATATTCATTTTTCC
CACATGAAAGTTATGGTGGACGTCCATTCGGTTTGACCATCCTCATGTTC
TTTAAAGATACCGTAAGTTCATTTTCTTTCTCCTTGGGCTGGTGATGAAT
TCTTATTTTCATTTTGAAAAATTTCACTTCAGCTTTGTATGTTTCTGTTA
TTATCCAAAGTTTGTCAAGCAAAAGAGCGGAATTATTGTGTTTTTGCTTA
CTTTATTGAGATTGATTTTTCGAAATAAAGTCACCTTTATTATGAGATGT
TTCTATTGATTTCTATCTCATCTTTTCTTGTAGGATGGCAACCAGTACGG
TGCTGGAGTTTTCAACGAGACCGTCACCTTAAAAGAATTAGATGAGAATT
TCGATGGAGAAACATTTTTCCTTTACGTTTTATTGGTTGCCGTTGCTCTT
TTGGTTGTATTTGGTATCAATTACGTCGTCTCTAACAAGGTAGGGGTTCC
CCTTTTACAAATATCTCTAAATAAGGCCTGGTTGTTGAAAAACCTCCTGA
AAACTAAATTATTTTCAATAGAAAAATAAGAAGATAGAATTTGGTTACAC
CACCTTTGCTGTTGCGAGGATTTCATTTTGATCATCGTGTAAAATTTAAT
TCTAGCATTATAAATTATGGGATCTCAAATGATATTTACATCCAATTTTA
ATTATTTCAAACTTACCATACCATATTTTGCACTTCCAGTTCAAAAGATC
GTCTTCCAAACCTAAAACAGAGACTGGGACGACCAACGACAAAAATGACG
TCGATTACGATTGGTTACCAAAAACCACCACCGATTTCAGTAAGTTGACA
ATTAGAATATCTTTGGTATGTTTACACCCAATACGTTGCGTTTCAAGCGA
AATCAGTCATTTTCTTGCCTTTTTCCCACCTTTAGAAAATGCCCAATTTA
GTGAATCGCGAAATTTAATACAGGTGAAAGTTTCCAGAAACTGGCAATCG
CGAAATCTAGTACACGCGAAAAACGTCTCCTCGAAAAAATTTCGCGAAAT
TTTGTAACACGCGAAATATAATACCAATAAGTTGAGACCAATTTAATTTG
TTGTTCTACGGGCCCGACCGACTCTAAAATCTGCTAAAATCAAAAAAATA
ATAATATCGAATTTCCACTACAATATATTTTACACACTAGTTAATTGAAA
GCATTCCATACACTAAAATTTTATTATGATCTTCATCGAAGATAAAACAC
AAAGTGAATTTTGATCCAGATACTTTTTGGAATATTTTCTCGGTACCTTA
CCAACCCTGATAAATGAAAAATTTATTCTTATTTTGCCGACCGACCGACC
CATATTTTTCTAACGATCTGTCCGTAGAACAACAAATTAAATTGGTCTCG
CCTAAGGTATTCAGCATTTAATCTTGCATTTCTGTTTTATCTTTAGAAGC
CTCACCCCGACGTCAGTCACCAAGGCAACGACGCGTCAAAAGATCGACCG
GATCCGGCGAGGAATAATAATCATGCAATTATTTATAAATTAATTTCAAT
TCAATCTGCATTAATCAAATGCAGGAGCATGTTTCACGCTCCTTGCCTTT
TTGATCTCTCCCTCGATTATTTTATTTTAGGTGAGTGTTTTTATCCGAGT
GGGGTTTTCAAGAAAAAATCAAAAAGATCTTTCGGCGAACTTTGTCCGTT
TAAATCATTAAACCAAGTTTTTAACAATTTTGTATCGAAGAATTTCTTGT
GAAGATTTCAAACCCTTTAATTCTAATTTTAGTCTTTTTTATATTCATTG
AAAAATTAAAAAGTTCACATTGTAAAGCTTAGAACGGTTTTTTTTCATAA
TATTTTAATATCGTCTCTCACATTGTATATATGCGAGCTATTTTTTGCAT
ATTGTAGTTAGCTTTATTACGATACAAAATTAAATGGAAACAATTAAAAA
AAGGAATGGGAA Coding sequence (CDS) from alignment at scaffold_52:159104..169065- >TCONS_00070306 ID=TCONS_00070306|Name=TCONS_00070306|organism=Clytia hemisphaerica|type=CDS|length=6090bp|location=Sequence derived from alignment at scaffold_52:159104..169065- (Clytia hemisphaerica)
AAGCCTCACCCCGACGTCAGTCACCAAGGCAACGACGCGTCAAAAGATCG
ACCGGATCCGGCGAGGAATAATTCAAAAGATCGTCTTCCAAACCTAAAAC
AGAGACTGGGACGACCAACGACAAAAATGACGTCGATTACGATTGGTTAC
CAAAAACCACCACCGATTTCAGATGGCAACCAGTACGGTGCTGGAGTTTT
CAACGAGACCGTCACCTTAAAAGAATTAGATGAGAATTTCGATGGAGAAA
CATTTTTCCTTTACGTTTTATTGGTTGCCGTTGCTCTTTTGGTTGTATTT
GGTATCAATTACGTCGTCTCTAACAAGATTTACCTGCTGGCAAACCACTT
CATCTTTTGGTTGGTCTCCAAAACAAAGGAGAGAAAGAATTCACCATCCA
AACAATCGATGCTTCGTTCAGATATCCACAAGATTATAATTACTTCATCC
AAAATTTCACTGCTATTTCGTACAACTCAGTTGTTGAACCGGGAAGTGAA
GCAACCTTTAGATATTCATTTTTCCCACATGAAAGTTATGGTGGACGTCC
ATTCGGTTTGACCATCCTCATGTTCTTTAAAGATACCGATGCAGAGGATG
AAGAAGAACAAGTTGGTGGAGTTAGAATGACTTCAGATGCCGTCACCTCC
GTTCTTTTCCCTGATTACCCTGAAAAAGTTTCTGCTCAAGAAGATGCAGT
AGAGGATGAGGTTGTAGCTGAGGAAGGAGAAGATTCCAAAGTGGAAGCTG
AAGATGAAGAACCTGCTGCCGAAGAAACCTCTCCCACTGGAAAAATGTTC
AAGTATCTGACACTTCCACTGTTACTTGCAGTACTATTATTACCAACGAG
TCTGGTATTTGTTGGCAGAGAAGCCTCACCCCGACGTCAGTCACCAAGGC
AACGACGCGTCAAAAGATCGACCGGATCCGGCGAGGAATAATTCAAAAGA
TCGTCTTCCAAACCTAAAACAGAGACTGGGACGACCAACGACAAAAATGA
CGTCGATTACGATTGGTTACCAAAAACCACCACCGATTTCAGATGGCAAC
CAGTACGGTGCTGGAGTTTTCAACGAGACCGTCACCTTAAAAGAATTAGA
TGAGAATTTCGATGGAGAAACATTTTTCCTTTACGTTTTATTGGTTGCCG
TTGCTCTTTTGGTTGTATTTGGTATCAATTACGTCGTCTCTAACAAGATT
TACCTGCTGGCAAACCACTTCATCTTTTGGTTGGTCTCCAAAACAAAGGA
GAGAAAGAATTCACCATCCAAACAATCGATGCTTCGTTCAGATATCCACA
AGATTATAATTACTTCATCCAAAATTTCACTGCTATTTCGTACAACTCAG
TTGTTGAACCGGGAAGTGAAGCAACCTTTAGATATTCATTTTTCCCACAT
GAAAGTTATGGTGGACGTCCATTCGGTTTGACCATCCTCATGTTCTTTAA
AGATACCGATGCAGAGGATGAAGAAGAACAAGTTGGTGGAGTTAGAATGA
CTTCAGATGCCGTCACCTCCGTTCTTTTCCCTGATTACCCTGAAAAAGTT
TCTGCTCAAGAAGATGCAGTAGAGGATGAGGTTGTAGCTGAGGAAGGAGA
AGATTCCAAAGTGGAAGCTGAAGATGAAGAACCTGCTGCCGAAGAAACCT
CTCCCACTGGAAAAATGTTCAAGTATCTGACACTTCCACTGTTACTTGCA
GTACTATTATTACCAACGAGTCTGGTATTTGTTGGCAGAGAAGCCTCACC
CCGACGTCAGTCACCAAGGCAACGACGCGTCAAAAGATCGACCGGATCCG
GCGAGGAATAATTCAAAAGATCGTCTTCCAAACCTAAAACAGAGACTGGG
ACGACCAACGACAAAAATGACGTCGATTACGATTGGTTACCAAAAACCAC
CACCGATTTCAGATGGCAACCAGTACGGTGCTGGAGTTTTCAACGAGACC
GTCACCTTAAAAGAATTAGATGAGAATTTCGATGGAGAAACATTTTTCCT
TTACGTTTTATTGGTTGCCGTTGCTCTTTTGGTTGTATTTGGTATCAATT
ACGTCGTCTCTAACAAGATTTACCTGCTGGCAAACCACTTCATCTTTTGG
TTGGTCTCCAAAACAAAGGAGAGAAAGAATTCACCATCCAAACAATCGAT
GCTTCGTTCAGATATCCACAAGATTATAATTACTTCATCCAAAATTTCAC
TGCTATTTCGTACAACTCAGTTGTTGAACCGGGAAGTGAAGCAACCTTTA
GATATTCATTTTTCCCACATGAAAGTTATGGTGGACGTCCATTCGGTTTG
ACCATCCTCATGTTCTTTAAAGATACCGATGCAGAGGATGAAGAAGAACA
AGTTGGTGGAGTTAGAATGACTTCAGATGCCGTCACCTCCGTTCTTTTCC
CTGATTACCCTGAAAAAGTTTCTGCTCAAGAAGATGCAGTAGAGGATGAG
GTTGTAGCTGAGGAAGGAGAAGATTCCAAAGTGGAAGCTGAAGATGAAGA
ACCTGCTGCCGAAGAAACCTCTCCCACTGGAAAAATGTTCAAGTATCTGA
CACTTCCACTGTTACTTGCAGTACTATTATTACCAACGAGTCTGGTATTT
GTTGGCAGAGAAGCCTCACCCCGACGTCAGTCACCAAGGCAACGACGCGT
CAAAAGATCGACCGGATCCGGCGAGGAATAATTCAAAAGATCGTCTTCCA
AACCTAAAACAGAGACTGGGACGACCAACGACAAAAATGACGTCGATTAC
GATTGGTTACCAAAAACCACCACCGATTTCAGATGGCAACCAGTACGGTG
CTGGAGTTTTCAACGAGACCGTCACCTTAAAAGAATTAGATGAGAATTTC
GATGGAGAAACATTTTTCCTTTACGTTTTATTGGTTGCCGTTGCTCTTTT
GGTTGTATTTGGTATCAATTACGTCGTCTCTAACAAGATTTACCTGCTGG
CAAACCACTTCATCTTTTGGTTGGTCTCCAAAACAAAGGAGAGAAAGAAT
TCACCATCCAAACAATCGATGCTTCGTTCAGATATCCACAAGATTATAAT
TACTTCATCCAAAATTTCACTGCTATTTCGTACAACTCAGTTGTTGAACC
GGGAAGTGAAGCAACCTTTAGATATTCATTTTTCCCACATGAAAGTTATG
GTGGACGTCCATTCGGTTTGACCATCCTCATGTTCTTTAAAGATACCGAT
GCAGAGGATGAAGAAGAACAAGTTGGTGGAGTTAGAATGACTTCAGATGC
CGTCACCTCCGTTCTTTTCCCTGATTACCCTGAAAAAGTTTCTGCTCAAG
AAGATGCAGTAGAGGATGAGGTTGTAGCTGAGGAAGGAGAAGATTCCAAA
GTGGAAGCTGAAGATGAAGAACCTGCTGCCGAAGAAACCTCTCCCACTGG
AAAAATGTTCAAGTATCTGACACTTCCACTGTTACTTGCAGTACTATTAT
TACCAACGAGTCTGGTATTTGTTGGCAGAGAAGCCTCACCCCGACGTCAG
TCACCAAGGCAACGACGCGTCAAAAGATCGACCGGATCCGGCGAGGAATA
ATTCAAAAGATCGTCTTCCAAACCTAAAACAGAGACTGGGACGACCAACG
ACAAAAATGACGTCGATTACGATTGGTTACCAAAAACCACCACCGATTTC
AGATGGCAACCAGTACGGTGCTGGAGTTTTCAACGAGACCGTCACCTTAA
AAGAATTAGATGAGAATTTCGATGGAGAAACATTTTTCCTTTACGTTTTA
TTGGTTGCCGTTGCTCTTTTGGTTGTATTTGGTATCAATTACGTCGTCTC
TAACAAGATTTACCTGCTGGCAAACCACTTCATCTTTTGGTTGGTCTCCA
AAACAAAGGAGAGAAAGAATTCACCATCCAAACAATCGATGCTTCGTTCA
GATATCCACAAGATTATAATTACTTCATCCAAAATTTCACTGCTATTTCG
TACAACTCAGTTGTTGAACCGGGAAGTGAAGCAACCTTTAGATATTCATT
TTTCCCACATGAAAGTTATGGTGGACGTCCATTCGGTTTGACCATCCTCA
TGTTCTTTAAAGATACCGATGCAGAGGATGAAGAAGAACAAGTTGGTGGA
GTTAGAATGACTTCAGATGCCGTCACCTCCGTTCTTTTCCCTGATTACCC
TGAAAAAGTTTCTGCTCAAGAAGATGCAGTAGAGGATGAGGTTGTAGCTG
AGGAAGGAGAAGATTCCAAAGTGGAAGCTGAAGATGAAGAACCTGCTGCC
GAAGAAACCTCTCCCACTGGAAAAATGTTCAAGTATCTGACACTTCCACT
GTTACTTGCAGTACTATTATTACCAACGAGTCTGGTATTTGTTGGCAGAG
AAGCCTCACCCCGACGTCAGTCACCAAGGCAACGACGCGTCAAAAGATCG
ACCGGATCCGGCGAGGAATAATTCAAAAGATCGTCTTCCAAACCTAAAAC
AGAGACTGGGACGACCAACGACAAAAATGACGTCGATTACGATTGGTTAC
CAAAAACCACCACCGATTTCAGATGGCAACCAGTACGGTGCTGGAGTTTT
CAACGAGACCGTCACCTTAAAAGAATTAGATGAGAATTTCGATGGAGAAA
CATTTTTCCTTTACGTTTTATTGGTTGCCGTTGCTCTTTTGGTTGTATTT
GGTATCAATTACGTCGTCTCTAACAAGATTTACCTGCTGGCAAACCACTT
CATCTTTTGGTTGGTCTCCAAAACAAAGGAGAGAAAGAATTCACCATCCA
AACAATCGATGCTTCGTTCAGATATCCACAAGATTATAATTACTTCATCC
AAAATTTCACTGCTATTTCGTACAACTCAGTTGTTGAACCGGGAAGTGAA
GCAACCTTTAGATATTCATTTTTCCCACATGAAAGTTATGGTGGACGTCC
ATTCGGTTTGACCATCCTCATGTTCTTTAAAGATACCGATGCAGAGGATG
AAGAAGAACAAGTTGGTGGAGTTAGAATGACTTCAGATGCCGTCACCTCC
GTTCTTTTCCCTGATTACCCTGAAAAAGTTTCTGCTCAAGAAGATGCAGT
AGAGGATGAGGTTGTAGCTGAGGAAGGAGAAGATTCCAAAGTGGAAGCTG
AAGATGAAGAACCTGCTGCCGAAGAAACCTCTCCCACTGGAAAAATGTTC
AAGTATCTGACACTTCCACTGTTACTTGCAGTACTATTATTACCAACGAG
TCTGGTATTTGTTGGCAGAGAAGCCTCACCCCGACGTCAGTCACCAAGGC
AACGACGCGTCAAAAGATCGACCGGATCCGGCGAGGAATAATTCAAAAGA
TCGTCTTCCAAACCTAAAACAGAGACTGGGACGACCAACGACAAAAATGA
CGTCGATTACGATTGGTTACCAAAAACCACCACCGATTTCAGATGGCAAC
CAGTACGGTGCTGGAGTTTTCAACGAGACCGTCACCTTAAAAGAATTAGA
TGAGAATTTCGATGGAGAAACATTTTTCCTTTACGTTTTATTGGTTGCCG
TTGCTCTTTTGGTTGTATTTGGTATCAATTACGTCGTCTCTAACAAGATT
TACCTGCTGGCAAACCACTTCATCTTTTGGTTGGTCTCCAAAACAAAGGA
GAGAAAGAATTCACCATCCAAACAATCGATGCTTCGTTCAGATATCCACA
AGATTATAATTACTTCATCCAAAATTTCACTGCTATTTCGTACAACTCAG
TTGTTGAACCGGGAAGTGAAGCAACCTTTAGATATTCATTTTTCCCACAT
GAAAGTTATGGTGGACGTCCATTCGGTTTGACCATCCTCATGTTCTTTAA
AGATACCGATGCAGAGGATGAAGAAGAACAAGTTGGTGGAGTTAGAATGA
CTTCAGATGCCGTCACCTCCGTTCTTTTCCCTGATTACCCTGAAAAAGTT
TCTGCTCAAGAAGATGCAGTAGAGGATGAGGTTGTAGCTGAGGAAGGAGA
AGATTCCAAAGTGGAAGCTGAAGATGAAGAACCTGCTGCCGAAGAAACCT
CTCCCACTGGAAAAATGTTCAAGTATCTGACACTTCCACTGTTACTTGCA
GTACTATTATTACCAACGAGTCTGGTATTTGTTGGCAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070306-exon-scaffold_52-1575043694:168355..169065 | TCONS_00070306-exon-scaffold_52-1575043694:168355..169065 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1575043694:163504..163619 | TCONS_00070306-exon-scaffold_52-1575043694:163504..163619 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1575043694:161594..161684 | TCONS_00070306-exon-scaffold_52-1575043694:161594..161684 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1575043694:160954..161213 | TCONS_00070306-exon-scaffold_52-1575043694:160954..161213 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1575043694:160577..160732 | TCONS_00070306-exon-scaffold_52-1575043694:160577..160732 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1575043694:160227..160326 | TCONS_00070306-exon-scaffold_52-1575043694:160227..160326 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1575043694:159104..159619 | TCONS_00070306-exon-scaffold_52-1575043694:159104..159619 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1510915933:168355..169065 | TCONS_00070306-exon-scaffold_52-1510915933:168355..169065 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1510915933:163504..163619 | TCONS_00070306-exon-scaffold_52-1510915933:163504..163619 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1510915933:161594..161684 | TCONS_00070306-exon-scaffold_52-1510915933:161594..161684 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1510915933:160954..161213 | TCONS_00070306-exon-scaffold_52-1510915933:160954..161213 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1510915933:160577..160732 | TCONS_00070306-exon-scaffold_52-1510915933:160577..160732 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1510915933:160227..160326 | TCONS_00070306-exon-scaffold_52-1510915933:160227..160326 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1510915933:159104..159619 | TCONS_00070306-exon-scaffold_52-1510915933:159104..159619 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1491911889:168355..169065 | TCONS_00070306-exon-scaffold_52-1491911889:168355..169065 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1491911889:163504..163619 | TCONS_00070306-exon-scaffold_52-1491911889:163504..163619 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1491911889:161594..161684 | TCONS_00070306-exon-scaffold_52-1491911889:161594..161684 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1491911889:160954..161213 | TCONS_00070306-exon-scaffold_52-1491911889:160954..161213 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1491911889:160577..160732 | TCONS_00070306-exon-scaffold_52-1491911889:160577..160732 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1491911889:160227..160326 | TCONS_00070306-exon-scaffold_52-1491911889:160227..160326 | Clytia hemisphaerica | exon |
| TCONS_00070306-exon-scaffold_52-1491911889:159104..159619 | TCONS_00070306-exon-scaffold_52-1491911889:159104..159619 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_52 | supercontig | scaffold_52:159104..169065 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005595 | TRAP_alpha |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005789 | endoplasmic reticulum membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005789 |
endoplasmic reticulum membrane |
Blast
BLAST of TCONS_00070306 vs. Swiss-Prot (Human)
Match: SSRA (Translocon-associated protein subunit alpha OS=Homo sapiens GN=SSR1 PE=1 SV=3) HSP 1 Score: 161.77 bits (408), Expect = 1.800e-44 Identity = 102/230 (44.35%), Postives = 146/230 (63.48%), Query Frame = 3
Query: 816 PTGKDAEDEEEQVGG-VRMTSDAVTSVLFPDYPEKDLPAGKPLHLLVGLQNKGEKEFTIQTIDASFRYPQDYNYFIQNFTAISYNSVVEPGSEATFRYSFFPHESYGGRPFGLTILMFFKDTDGNQYGAGVFNETVTLKELDENFDGETFFXXXXXXXXXXXXXFGINYVVSNKFKRSSSKPKTETGTTNDKNDVDYDWLPKTTTD-FKAXXXXXXXXXXXVKRSTGSGE 1499
PT + EEE V G + A T++LF +D PA + LVG NKG ++F ++++DASFRYPQDY ++IQNFTA+ N+VV P +ATF YSF P E GGRPFGL I + +KD +GN + VFN+TVT+ E ++ DGET F+Y+ L + LLV+ G++ ++ ++ KR K E GT++ +NDVD W+P+ T + + R+ PR+R KRS GS E
Sbjct: 61 PTDLVEDKEEEDVSGEPEASPSADTTILF--VKGEDFPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLHQLLESR-KRKRPIQKVEMGTSS-QNDVDMSWIPQETLNQINKASPRRLPRKRAQKRSVGSDE 286
The following BLAST results are available for this feature:
|
