TCONS_00070307 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070307
Unique NameTCONS_00070307
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070307 ID=TCONS_00070307|Name=TCONS_00070307|organism=Clytia hemisphaerica|type=transcript|length=1796bp
aaaaatgatttcttgctgagcaaaaagttttcattcaaaattcaaaattt
tttcgccatcaattcggaaatatttttctcgttctgtttacaaaatttca
gctcCAAAGTAGTTTTGGTTCCTGAGATATCGAGAgtcattttttgttga
attttttttactccgtgaaaagattgaatttcttctttttttcttcagat
gtttggaaaattttgaaggaaaagaaattcgcgaaatttgaagaaatttt
ccaacaaaaaccgaACATCGTCAACTCGTTGCGTGATGGTGGTGGTTGGA
CACTTCTCATGTATGCTGTTCGTGGAGATCGTTTCGACGTTTTCGTTCAC
TTGATGAATTATCCTCAAGATTTTTCACTCGTGAACAATCATGGTGCGAA
CGTTCTTCATCGTGTTGGTTGGAGAGGAGAAGTTCGTCATTTGGAACAAT
TTGATCAACAAACAATCGAAATGTTGATCGATGGAAGAGACAAATATAAC
TTCACACCATTGCATAGTGCAGCATGGAACAacaaatatgacgtcatcag
atggtTGTTGGCCAAAGGAGCGGACCCAGAATTGAAAAACAATCGTGGTC
GACGCCCTGATGAACAAGATGAATGTGATGGTGTTACCAAAGAAATCTTT
CGATCGTTTCGTTCGTCTtgattgaTTGATTGTTTCCATTGTTTGTTTCA
TCAtttccaatgacgtcatcggttccAAATTATTTCCACattcccAGCAT
GACAGCACGCTGAGAAGTTACACCCGTCGTTTTGGACGCCGTTTCTACGA
TTACGTTATTTATTCATTCCGTCTCTACAGTTCTGTTTCCGTTCAAACAT
TACTACCTtcattttggcttgtttttatatgTATTTTTACCACTTGACTA
ACTTGACTATTATTACGTCAACCGTCACTAGTTTCGATGGCATGTCTATT
CTTACACCCTTACGTTTCCGCCTTATGGATTACCTTGGTTGACTATGAAA
AAGAGTACACTGCTAAAACTGTCACTATTGATTTCGATTGGATCATTTCC
CTTGTAAATATCCGACTCTTTTCACTAATTCCGTGAAATTTTGTTCAGTC
AGTCAGGGAAAAATTTAGATACTATTTTTAGTGGAAAACCCTGTCAACAG
TGACCTCGGTGAAAACATGAATTTTTCTAACCTTTGCTCCCAGGATTTTT
TTGTATGGTTTAGGTTTGTCACGTCCACAGGTGAAACAATCAAGTTAAAT
TATCTAAGTATGTACTGTCAAAGTTTTTACGGTCTTTTTCGGGAGAGACT
CATGGGGGCTAAATATTTGATGGTTTCAATTTGAAATTGCTCTTCATTTC
AAGCCGATGAACGTTTTTTTGTATATACACGACAAATATCTATATTATAT
Tgagataagaatattttattgtatagatttaatagcgctccgcaatgcat
acgtcataattattacttttcactttttttgacatttgtacgagttgcca
tcccacaattcaacgcggcTCAACTAAAAATACGTGCaagctgttatata
tcttttgtcaaacgatACAATTAAcatgcaaaagagattaacgcaaaggt
tgatgggattggaactcgtacaaacacatcgagagtagtcaagaataaaa
tctatttctagattcagcgcggtgcgctattgtAAATATAATTGTAAAAA
TTTGCTCTCATTAATTGATTAATTAACTCATTATGAAAAATTACAAATCG
ACCTTAGGCGACTTGAGACGAAGTTTTCTGCTTAACTGTTTGGGAG
Run BLAST on NCBI

protein sequence of TCONS_00070307-protein

>TCONS_00070307-protein ID=TCONS_00070307-protein|Name=TCONS_00070307-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MYAVRGDRFDVFVHLMNYPQDFSLVNNHGANVLHRVGWRGEVRHLEQFDQ
QTIEMLIDGRDKYNFTPLHSAAWNNKYDVIRWLLAKGADPELKNNRGRRP
DEQDECDGVTKEIFRSFRSS
Run BLAST on NCBI

transcript from alignment at scaffold_52:209539..212266-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070307 ID=TCONS_00070307|Name=TCONS_00070307|organism=Clytia hemisphaerica|type=transcript|length=2728bp|location=Sequence derived from alignment at scaffold_52:209539..212266- (Clytia hemisphaerica)
AAAAATGATTTCTTGCTGAGCAAAAAGTTTTCATTCAAAATTCAAAATTT
TTTCGCCATCAATTCGGAAATATTTTTCTCGTTCTGTTTACAAAATTTCA
GCTCCAAAGTAGTTTTGGTTCCTGAGATATCGAGAGTCATTTTTTGTTGA
ATTTTTTTTACTCCGTGAAAAGATTGAATTTCTTCTTTTTTTCTTCAGAT
GTTTGGAAAATTTTGAAGGAAAAGAAATTCGCGAAATTTGAAGAAATTTT
CCAACAAAAACCGAACATCGTCAACTCGTTGCGTGATGGTGGTGGTTGGA
CACTTCTCATGTATGCTGTTCGTGGAGATCGTTTCGACGTTTTCGTTCAC
TTGATGAATTATCCTCAAGATTTTTCACTCGTGAACAATCATGGTGCGAA
CGTTCTTCATCGTGTTGGTTGGAGAGGAGAAGTTCGTCATTTGGAACAAT
TTGATCAACAAACAATCGAAATGTTGATCGATGGAAGAGACAAATATAAC
TTCACACCATTGCATAGTGCAGCATGGAACAACAAATATGACGTCATCAG
ATGGTTGTTGGCCAAAGGAGCGGACCCAGAATTGAAAAACAATCGTGGTC
GACGCCCTGATGAACAAGATGAATGTGATGGTGTTACCAAAGAAATCTTT
CGATCGTTTCGTTCGTCTTGGTAAGAAAAATATCAACTTTTTCACGTTTT
TTTAGGGTGGGAATNTTTCGTTCGTCTTGGTAAGAAAAATATCAACTTTT
TCACGTTTTTTTAGGGTTGAAATATTTTTCGGAGTTTAAAAAAAAATTTT
TCATTTTCTATTATTGCGAGAAGTGTTGAAACTTTTTTTTTTTTAATTTT
TCAATAGAAGTGAAAATTTATTTAGAAAGTCTTTAAAATCTTTCAGTCGG
ATAAATTTTACCTTTTCGGAGTTTGAATGAAAGAACCGGATGAATTGATT
CGATATTTTGATTGAGATTTTTCATCGCAATGGAGCAACATATTTTGGAG
ACGGTTGAAATTTGCAAATAGATGGTTGTTTGTGAAATGTTTTCTCAGGT
TGTTATGAATTTATTTCTTGGCGGAGAAAAAAGTTGTCGTTTTTTTTTAG
TTTATCGATGATTGTTCATGTGTTTCAAATGTTTTTCATTCGATTATTTA
TTTTTCAGATTGATTGATTGTTTCCATTGTTTGTTTCATCATTTCCAATG
ACGTCATCGGTTCCAAATTATTTCCACGTAAGTATATTTGATCATTTATT
TAGTTTCCGGCTGATGTGAAATTGCCTAAAGCCTAAATTTTTTGCATACC
GGTTTTTTGAACAAATGAATCAATTCAAAAAACTTAGAAAGGAGGGCTTG
CTAAGCCTGTACCAAACTCTTCTTAGTGGAATGAAAAGACTAAGGGAAAT
TCAGTAAAATGTACAGTTCGGACTTTCATATGGCTGAGACGATTCCACGC
AAGTCTCGGTTGTAAAGTGTTGAACTATTTTCAATATTAAGTTTCTTCGT
TTAGTCGAATTAATGCAATTTTTTTGTACTCGGTGTTTTTTAAACTTTTC
CTCCAGACCAGATCAACATTCTCATTAGCCGCTTCTTTAAAAAACCATTT
ATTCATCTTCGAGTCAGCAAGTTTTGTTTTGCAAATTAACCTCCAAAATT
TTCAATTTTTTTTATTTTTAGATTCCCAGCATGACAGCACGCTGAGAAGT
TACACCCGTCGTTTTGGACGCCGTTTCTACGATTACGTTATTTATTCATT
CCGTCTCTACAGTTCTGTTTCCGTTCAAACATTACTACCTTCATTTTGGC
TTGTTTTTATATGTATTTTTACCACTTGACTAACTTGACTATTATTACGT
CAACCGTCACTAGTTTCGATGGCATGTCTATTCTTACACCCTTACGTTTC
CGCCTTATGGATTACCTTGGTTGACTATGAAAAAGAGTACACTGCTAAAA
CTGTCACTATTGATTTCGATTGGATCATTTCCCTTGTAAATATCCGACTC
TTTTCACTAATTCCGTGAAATTTTGTTCAGTCAGTCAGGGAAAAATTTAG
ATACTATTTTTAGTGGAAAACCCTGTCAACAGTGACCTCGGTGAAAACAT
GAATTTTTCTAACCTTTGCTCCCAGGATTTTTTTGTATGGTTTAGGTTTG
TCACGTCCACAGGTGAAACAATCAAGTTAAATTATCTAAGTATGTACTGT
CAAAGTTTTTACGGTCTTTTTCGGGAGAGACTCATGGGGGCTAAATATTT
GATGGTTTCAATTTGAAATTGCTCTTCATTTCAAGCCGATGAACGTTTTT
TTGTATATACACGACAAATATCTATATTATATTGAGATAAGAATATTTTA
TTGTATAGATTTAATAGCGCTCCGCAATGCATACGTCATAATTATTACTT
TTCACTTTTTTTGACATTTGTACGAGTTGCCATCCCACAATTCAACGCGG
CTCAACTAAAAATACGTGCAAGCTGTTATATATCTTTTGTCAAACGATAC
AATTAACATGCAAAAGAGATTAACGCAAAGGTTGATGGGATTGGAACTCG
TACAAACACATCGAGAGTAGTCAAGAATAAAATCTATTTCTAGATTCAGC
GCGGTGCGCTATTGTAAATATAATTGTAAAAATTTGCTCTCATTAATTGA
TTAATTAACTCATTATGAAAAATTACAAATCGACCTTAGGCGACTTGAGA
CGAAGTTTTCTGCTTAACTGTTTGGGAG

Coding sequence (CDS) from alignment at scaffold_52:209539..212266-

>TCONS_00070307 ID=TCONS_00070307|Name=TCONS_00070307|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_52:209539..212266- (Clytia hemisphaerica)
AATGTATGCTGTTCGTGGAGATCGTTTCGACGTTTTCGTTCACTTGATGA
ATTATCCTCAAGATTTTTCACTCGTGAACAATCATGGTGCGAACGTTCTT
CATCGTGTTGGTTGGAGAGGAGAAGTTCGTCATTTGGAACAATTTGATCA
ACAAACAATCGAAATGTTGATCGATGGAAGAGACAAATATAACTTCACAC
CATTGCATAGTGCAGCATGGAACAACAAATATGACGTCATCAGATGGTTG
TTGGCCAAAGGAGCGGACCCAGAATTGAAAAACAATCGTGGTCGACGCCC
TGATGAACAAGATGAATGTGATGGTGTTACCAAAGAAATCTTTCGATCGT
TTCGTTCGTCTTGAATGTATGCTGTTCGTGGAGATCGTTTCGACGTTTTC
GTTCACTTGATGAATTATCCTCAAGATTTTTCACTCGTGAACAATCATGG
TGCGAACGTTCTTCATCGTGTTGGTTGGAGAGGAGAAGTTCGTCATTTGG
AACAATTTGATCAACAAACAATCGAAATGTTGATCGATGGAAGAGACAAA
TATAACTTCACACCATTGCATAGTGCAGCATGGAACAACAAATATGACGT
CATCAGATGGTTGTTGGCCAAAGGAGCGGACCCAGAATTGAAAAACAATC
GTGGTCGACGCCCTGATGAACAAGATGAATGTGATGGTGTTACCAAAGAA
ATCTTTCGATCGTTTCGTTCGTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043783XLOC_043783Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070307-proteinTCONS_00070307-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070307-exon-scaffold_52-1575043694:211597..212266TCONS_00070307-exon-scaffold_52-1575043694:211597..212266Clytia hemisphaericaexon
TCONS_00070307-exon-scaffold_52-1575043694:211040..211108TCONS_00070307-exon-scaffold_52-1575043694:211040..211108Clytia hemisphaericaexon
TCONS_00070307-exon-scaffold_52-1575043694:209539..210595TCONS_00070307-exon-scaffold_52-1575043694:209539..210595Clytia hemisphaericaexon
TCONS_00070307-exon-scaffold_52-1510915933:211597..212266TCONS_00070307-exon-scaffold_52-1510915933:211597..212266Clytia hemisphaericaexon
TCONS_00070307-exon-scaffold_52-1510915933:211040..211108TCONS_00070307-exon-scaffold_52-1510915933:211040..211108Clytia hemisphaericaexon
TCONS_00070307-exon-scaffold_52-1510915933:209539..210595TCONS_00070307-exon-scaffold_52-1510915933:209539..210595Clytia hemisphaericaexon
TCONS_00070307-exon-scaffold_52-1491911889:211597..212266TCONS_00070307-exon-scaffold_52-1491911889:211597..212266Clytia hemisphaericaexon
TCONS_00070307-exon-scaffold_52-1491911889:211040..211108TCONS_00070307-exon-scaffold_52-1491911889:211040..211108Clytia hemisphaericaexon
TCONS_00070307-exon-scaffold_52-1491911889:209539..210595TCONS_00070307-exon-scaffold_52-1491911889:209539..210595Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:209539..212266 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.465665	0.484538	0.368051	0.210526	0.878556	0.470609	1.24851	1.10144	1.55459	1.687	3.16379	1.27627	3.56437	2.26192	0.909213	1.01621	0.841963	1.06691	3.52516	3.14832	1.90665	1.98868	0.885118	1.36403	3.34838	3.80985	4.6123	4.3386	2.82979	2.06481
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070307 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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