TCONS_00070308 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070308
Unique NameTCONS_00070308
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1914

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070308 ID=TCONS_00070308|Name=TCONS_00070308|organism=Clytia hemisphaerica|type=transcript|length=1914bp
GCAGGAGAAAATGACAAGACAAAAAGCAAACCGGGGtaaaagcaaaataa
ataataagatttttggttctatattgaaaaaatgaaatgataaGAATTAT
AAAACGTCTTAAATATTTTACAAGAAAGCTAATCCACAGTTCACCAAATA
TTACAATGTTGGAATCTGAGAAACAAAAGAATATTTCTTGCTAGGTTGTT
TATTGATATTTATTTTGTCTTCAGTGAAAGAGGTCTTATCTTCTTCGGTT
TCAAGTTCAAAATCATACTGTTTTGTTATCTCTGTAGAGTGGACACTGCc
aaaaaaatctgtcaacaaGGTCTTATCTAATGGTCTCTGAAACAAATCAG
AGCGTACATGGGGGTGTGAACGTACAAGATAATAATCACTTGTTTGTTCG
AAGAACTCTTTCATGGTCTTCTTACTATCTGGTTGAACTCCCTCTAGAAA
TTGTAAAATGTAATAAGTCCATCGGTCAATGATTGGAACACCAATCTTTG
GATCATCATGGTGAGATAAAGAGTCTTCCCCAACTTGACTGCTAGCAGCT
GCTAGAATGTTTGGAGAATAACATTTAGCATGGATAGAAGCTGCTTGACA
AGTGTCCGTTAATAACAATAATTCATTGTAGCGACCCTTAAGCCACATCT
GTTCAAAAACATCAGCTAATTCAATGTTTGTAATCTCCTCTGCttcttga
aatttgagaaaaccttCTCCCCCATGCCCAGTAAGATAAACCAAAATATT
ACTCGTTTCATCTGAGAGTAAACGTTTTGAGCGTGGTGAATTTTCATTGA
CACGTCCAGTCAATACTCTAACAAGATTTTCTGGTGTAACTTCATAACCT
TTGTAATCAACTTCTACATTATCACCATAAACATCGATTTTCTGTTGAAC
ATTATTAAAAACTCGAGCAGGACGTGAATTTCTTGGGTTACAAGGCATTT
CATCTGCTAGCATCAATATAATATGACTGTCTGGTATACCTAACCTTTTA
ACGCTGCGATAAACCGACAGAGCATTTGCAATATGTCTATAATTGAACCA
GTATCTTGATGTACATGCTATAACTGCCCAATTATTTGTGTGGTTCTTCC
TAGCTCCAAAAACATTTCCAAATTGGGCATGGAGCAcagcaacaaaaata
aaagtatGAAGCCAAGATTTCATTTCTACAaactgttaaaaaaaaattaa
actggGTGACTCAAAAAGAATTAGGACATATATATTGATCCACGTGCAGA
CTGAATCAAGTCTTTCTTGGACCAGCTTGAAATCAGTGTTTCTCTTATat
taaaataagattttaaaattcaaattttgaacgTTTGATATTTCACTTTG
GTCAAAAAGTTTCCAGCTACAGTatataaaaataatcattttcttGCAGA
ATTAGcagtttttaaaataaaaatgagataaaataaTTTAGCacattttc
atgtattttgaaaagggaatttcaattttaaaagctTATACTTGAATGGG
ATAAactggttcttcggttttaaatgtttattttgctgttaaagggaaaa
taattagtttgaacggtgacagaaaggatcttcatcatcccttgactttt
aacagcaagtttcaagtatcaaataaagtcaatcaatgaggcGAGGTTTT
TGCAAATCGCGCGGGCGGGatgagtgctcttttagtgaacaaaacttacc
ttgcaaaaccaagtggatattctatgataaagaagtacggaggtaatcaa
atttgtcgaatttgtcaagaaATAAATCAAAACTGCCAAAGAACCagcaa
gccatctttgtacatttttgtttttgctttattttaatgtttgatgattt
cgacagacgattcgtgattcaaataaaaatgttcgatcgttcgacgaata
tcgttcgattttat
Run BLAST on NCBI

protein sequence of TCONS_00070308-protein

>TCONS_00070308-protein ID=TCONS_00070308-protein|Name=TCONS_00070308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MKSWLHTFIFVAVLHAQFGNVFGARKNHTNNWAVIACTSRYWFNYRHIAN
ALSVYRSVKRLGIPDSHIILMLADEMPCNPRNSRPARVFNNVQQKIDVYG
DNVEVDYKGYEVTPENLVRVLTGRVNENSPRSKRLLSDETSNILVYLTGH
GGEGFLKFQEAEEITNIELADVFEQMWLKGRYNELLLLTDTCQAASIHAK
CYSPNILAAASSQVGEDSLSHHDDPKIGVPIIDRWTYYILQFLEGVQPDS
KKTMKEFFEQTSDYYLVRSHPHVRSDLFQRPLDKTLLTDFFGSVHSTEIT
KQYDFELETEEDKTSFTEDKININKQPSKKYSFVSQIPTL
Run BLAST on NCBI

transcript from alignment at scaffold_52:5950..7863

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070308 ID=TCONS_00070308|Name=TCONS_00070308|organism=Clytia hemisphaerica|type=transcript|length=1914bp|location=Sequence derived from alignment at scaffold_52:5950..7863 (Clytia hemisphaerica)
ataaaatcgaacgatattcgtcgaacgatcgaacatttttatttgaatca
cgaatcgtctgtcgaaatcatcaaacattaaaataaagcaaaaacaaaaa
tgtacaaagatggcttgctGGTTCTTTGGCAGTTTTGATTTATttcttga
caaattcgacaaatttgattacctccgtacttctttatcatagaatatcc
acttggttttgcaaggtaagttttgttcactaaaagagcactcatCCCGC
CCGCGCGATTTGCAAAAACCTCgcctcattgattgactttatttgatact
tgaaacttgctgttaaaagtcaagggatgatgaagatcctttctgtcacc
gttcaaactaattattttccctttaacagcaaaataaacatttaaaaccg
aagaaccagtTTATCCCATTCAAGTATAagcttttaaaattgaaattccc
ttttcaaaatacatgaaaatgtGCTAAAttattttatctcatttttattt
taaaaactgCTAATTCTGCaagaaaatgattatttttatatACTGTAGCT
GGAAACTTTTTGACCAAAGTGAAATATCAAAcgttcaaaatttgaatttt
aaaatcttattttaatATAAGAGAAACACTGATTTCAAGCTGGTCCAAGA
AAGACTTGATTCAGTCTGCACGTGGATCAATATATATGTCCTAATTCTTT
TTGAGTCACccagtttaatttttttttaacagttTGTAGAAATGAAATCT
TGGCTTCatacttttatttttgttgctgTGCTCCATGCCCAATTTGGAAA
TGTTTTTGGAGCTAGGAAGAACCACACAAATAATTGGGCAGTTATAGCAT
GTACATCAAGATACTGGTTCAATTATAGACATATTGCAAATGCTCTGTCG
GTTTATCGCAGCGTTAAAAGGTTAGGTATACCAGACAGTCATATTATATT
GATGCTAGCAGATGAAATGCCTTGTAACCCAAGAAATTCACGTCCTGCTC
GAGTTTTTAATAATGTTCAACAGAAAATCGATGTTTATGGTGATAATGTA
GAAGTTGATTACAAAGGTTATGAAGTTACACCAGAAAATCTTGTTAGAGT
ATTGACTGGACGTGTCAATGAAAATTCACCACGCTCAAAACGTTTACTCT
CAGATGAAACGAGTAATATTTTGGTTTATCTTACTGGGCATGGGGGAGaa
ggttttctcaaatttcaagaaGCAGAGGAGATTACAAACATTGAATTAGC
TGATGTTTTTGAACAGATGTGGCTTAAGGGTCGCTACAATGAATTATTGT
TATTAACGGACACTTGTCAAGCAGCTTCTATCCATGCTAAATGTTATTCT
CCAAACATTCTAGCAGCTGCTAGCAGTCAAGTTGGGGAAGACTCTTTATC
TCACCATGATGATCCAAAGATTGGTGTTCCAATCATTGACCGATGGACTT
ATTACATTTTACAATTTCTAGAGGGAGTTCAACCAGATAGTAAGAAGACC
ATGAAAGAGTTCTTCGAACAAACAAGTGATTATTATCTTGTACGTTCACA
CCCCCATGTACGCTCTGATTTGTTTCAGAGACCATTAGATAAGACCttgt
tgacagatttttttgGCAGTGTCCACTCTACAGAGATAACAAAACAGTAT
GATTTTGAACTTGAAACCGAAGAAGATAAGACCTCTTTCACTGAAGACAA
AATAAATATCAATAAACAACCTAGCAAGAAATATTCTTTTGTTTCTCAGA
TTCCAACATTGTAATATTTGGTGAACTGTGGATTAGCTTTCTTGTAAAAT
ATTTAAGACGTTTTATAATTCttatcatttcattttttcaatatagaacc
aaaaatcttattatttattttgcttttaCCCCGGTTTGCTTTTTGTCTTG
TCATTTTCTCCTGC

Coding sequence (CDS) from alignment at scaffold_52:5950..7863

>TCONS_00070308 ID=TCONS_00070308|Name=TCONS_00070308|organism=Clytia hemisphaerica|type=CDS|length=1023bp|location=Sequence derived from alignment at scaffold_52:5950..7863 (Clytia hemisphaerica)
ATGAAATCTTGGCTTCatacttttatttttgttgctgTGCTCCATGCCCA
ATTTGGAAATGTTTTTGGAGCTAGGAAGAACCACACAAATAATTGGGCAG
TTATAGCATGTACATCAAGATACTGGTTCAATTATAGACATATTGCAAAT
GCTCTGTCGGTTTATCGCAGCGTTAAAAGGTTAGGTATACCAGACAGTCA
TATTATATTGATGCTAGCAGATGAAATGCCTTGTAACCCAAGAAATTCAC
GTCCTGCTCGAGTTTTTAATAATGTTCAACAGAAAATCGATGTTTATGGT
GATAATGTAGAAGTTGATTACAAAGGTTATGAAGTTACACCAGAAAATCT
TGTTAGAGTATTGACTGGACGTGTCAATGAAAATTCACCACGCTCAAAAC
GTTTACTCTCAGATGAAACGAGTAATATTTTGGTTTATCTTACTGGGCAT
GGGGGAGaaggttttctcaaatttcaagaaGCAGAGGAGATTACAAACAT
TGAATTAGCTGATGTTTTTGAACAGATGTGGCTTAAGGGTCGCTACAATG
AATTATTGTTATTAACGGACACTTGTCAAGCAGCTTCTATCCATGCTAAA
TGTTATTCTCCAAACATTCTAGCAGCTGCTAGCAGTCAAGTTGGGGAAGA
CTCTTTATCTCACCATGATGATCCAAAGATTGGTGTTCCAATCATTGACC
GATGGACTTATTACATTTTACAATTTCTAGAGGGAGTTCAACCAGATAGT
AAGAAGACCATGAAAGAGTTCTTCGAACAAACAAGTGATTATTATCTTGT
ACGTTCACACCCCCATGTACGCTCTGATTTGTTTCAGAGACCATTAGATA
AGACCttgttgacagatttttttgGCAGTGTCCACTCTACAGAGATAACA
AAACAGTATGATTTTGAACTTGAAACCGAAGAAGATAAGACCTCTTTCAC
TGAAGACAAAATAAATATCAATAAACAACCTAGCAAGAAATATTCTTTTG
TTTCTCAGATTCCAACATTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043784XLOC_043784Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070308-proteinTCONS_00070308-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070308-exon-scaffold_52-1491911889:5950..7863TCONS_00070308-exon-scaffold_52-1491911889:5950..7863Clytia hemisphaericaexon
TCONS_00070308-exon-scaffold_52-1510915933:5950..7863TCONS_00070308-exon-scaffold_52-1510915933:5950..7863Clytia hemisphaericaexon
TCONS_00070308-exon-scaffold_52-1575043694:5950..7863TCONS_00070308-exon-scaffold_52-1575043694:5950..7863Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:5950..7863 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.3435	37.8106	18.7446	16.3392	9.77768	8.75116	10.8033	11.452	7.62794	6.8146	8.13883	6.03569	5.83232	6.99408	6.30602	6.56792	8.26518	8.89821	4.35724	4.71352	7.46784	6.95782	27.0503	24.884	6.38708	7.2995	4.64728	4.10384	12.0466	12.519
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001096Peptidase_C13
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0008233peptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0008233 peptidase activity
Blast
[Close]
BLAST of TCONS_00070308 vs. Swiss-Prot (Human)
Match: GPI8 (GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE=1 SV=2)

HSP 1 Score: 399.823 bits (1026), Expect = 6.265e-133
Identity = 195/342 (57.02%), Postives = 248/342 (72.51%), Query Frame = -1 
Query:  157 IFVAVLHAQFGNVFGA----------RKNHTNNWAVIACTSRYWFNYRHIANALSVYRSVKRLGIPDSHIILMLADEMPCNPRNSRPARVFNNVQQKIDVYGDNVEVDYKGYEVTPENLVRVLTGRVNENSPRSKRLLSDETSNILVYLTGHGGEGFLKFQEAEEITNIELADVFEQMWLKGRYNELLLLTDTCQAASIHAKCYSPNILAAASSQVGEDSLSHHDDPKIGVPIIDRWTYYILQFLEGVQPDSKKTMKEFFEQTSDYYLVRSHPHVRSDLFQRPLDKTLLTDFFGSVHSTEITKQ-YDFELETEEDKTSFTEDKININKQPSKKYSFVSQIPT 1149
            +   VL   FG+V  +          R  HTNNWAV+ CTSR+WFNYRH+AN LSVYRSVKRLGIPDSHI+LMLAD+M CNPRN +PA VF++   +++VYGD+VEVDY+ YEVT EN +RVLTGR+  ++PRSKRLLSD+ SNIL+Y+TGHGG GFLKFQ++EEITNIELAD FEQMW K RYNELL + DTCQ AS++ + YSPNI+A ASSQVGEDSLSH  DP IGV ++DR+T+Y+L+FLE + P S+  M + F Q     L  S P  R+DLFQR     L+TDFFGSV   EIT +    + ++E  ++S+ ED+++       KY+   Q+P 
Sbjct:   13 VLATVLLLSFGSVAASHIEDQAEQFFRSGHTNNWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDDVEVDYRSYEVTVENFLRVLTGRIPPSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSPNIMALASSQVGEDSLSHQPDPAIGVHLMDRYTFYVLEFLEEINPASQTNMNDLF-QVCPKSLCVSTPGHRTDLFQRDPKNVLITDFFGSVRKVEITTETIKLQQDSEIMESSYKEDQMDEKLMEPLKYA--EQLPV 351
The following BLAST results are available for this feature:
BLAST of TCONS_00070308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GPI86.265e-13357.02GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE... [more]
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