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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070309 ID=TCONS_00070309|Name=TCONS_00070309|organism=Clytia hemisphaerica|type=transcript|length=1545bp
TTTTTGTTGTAATGTTGTCAAGACATTGTGGTGATCATTTGTACATTGAA
AGCCGATTGAAAGCTCCATAAAAGGCACATAACTGTCATTTACTTTTATC
ATGAGATAGAAACCAGGTCCACATTACGTAATCATTTCTCAGCGCGAAAG
GATATAAATATTTCATGTAGTTGAGACATGAATTAAATCAGAGAACATAA
ACATAGATTCAAGATGGCAGCTGCGTCCAACTCTAAAATGTCTTCAGACT
TGAACAACACTCAACGTTTGCTTAAAGCTATTGACTTTGCTGCTATAAAA
CACAAAGATCAAAGAAGGAAAGACCCAAATCAAACACCTTATATTAATCA
TCCGGTTGGAGTTGCTCAAATTATTTCAGACGAAGCTCATATTTCAGATA
TTGATATTTTAGTAGGAGCTGTTTTGCATGATACAGTCGAGGATACTGAA
ACAACTTTGGATGAAATCGAGGATGTTTTTGGTTCCAAGATGAGACTTAT
TGTTGATGAAGTGAGTGAtgataaaaacaaaagcaaagAAGAACGAAAAC
AAGCTCAAATAGACAAGTCACCTTTTGTTAGTTATGAAGCAAAAATTGTT
AAACTTGCTGATAAATTATATAATTTGAGAGACTTGGAACGCCAGACTCC
CAAAGGCTGGACTGAAGAACGAGTACAAGAATATTTTGTTTGGGCCTCAA
AAGTATGTAACGGTATCAGAGGCACTTGCAAAATCTTGGACAGTAAATTA
GATGAAATGTTTGTGAAGCGAAACATTTCAATTTAGGAATTTATCATTAA
TTTATTCAATTCCTAGTAGATCACTATAAAATGCCTTGCttacaaaattt
ccaataatatcggatattttaaggctttaaatTGTTTCACAACGCAAATT
AGCAAAAAGACCATCTTCAATTTGATAAGTGTTCGAGCTCAATCATCAAG
TCTCTTAGAAACTTCACTGCTGTGAATTTGAACAGTTTTTGCAATCAATA
TCTTACAGTACATTATTTTGCTTGTGTTATTGCAACTTAGATTAAAATTA
CATATATTTATTGGTATTTTAGATTAGAACCTAGATTTATTTTGTgttta
gattaaaaaaaaatgatacattATCATTCTTAGTAAAAACATCCTTCAGG
TGTCAAATTTGAGGGACTCTTGTCTTTCCATAAAACTCTTCATAAAATTC
TGTAGTCCATTTCAATTTGTATTAAATCTTGCGTTGTTTTTTTAAGAGAC
TTTGTCTTACTGTAGTATGTTGATATATAATATGGCaatgttttttttag
tttgctgatttcatattttgatatttttatttcgtttttgtATATATGCA
AGAGAAGATTATTTTATACTTTTGAATTCTGATGAGAAAAGCagtttatt
tttgttaaaacgACAATTGGATTTATTATGTTGATATTCACCATGTATAG
TTTTTCATTATTGTATTCTCTTAGAGAGAGAAAATATtagtgtttttgtt
ttaaatattttgtccTTATTCATTCATTCAGTTTTGCTTTCATCG Run BLAST on NCBI protein sequence of TCONS_00070309-protein >TCONS_00070309-protein ID=TCONS_00070309-protein|Name=TCONS_00070309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MAAASNSKMSSDLNNTQRLLKAIDFAAIKHKDQRRKDPNQTPYINHPVGV
AQIISDEAHISDIDILVGAVLHDTVEDTETTLDEIEDVFGSKMRLIVDEV
SDDKNKSKEERKQAQIDKSPFVSYEAKIVKLADKLYNLRDLERQTPKGWT
EERVQEYFVWASKVCNGIRGTCKILDSKLDEMFVKRNISI Run BLAST on NCBI transcript from alignment at scaffold_52:44851..46395 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070309 ID=TCONS_00070309|Name=TCONS_00070309|organism=Clytia hemisphaerica|type=transcript|length=1545bp|location=Sequence derived from alignment at scaffold_52:44851..46395 (Clytia hemisphaerica)
CGATGAAAGCAAAACTGAATGAATGAATAAggacaaaatatttaaaacaa
aaacactaATATTTTCTCTCTCTAAGAGAATACAATAATGAAAAACTATA
CATGGTGAATATCAACATAATAAATCCAATTGTcgttttaacaaaaataa
actGCTTTTCTCATCAGAATTCAAAAGTATAAAATAATCTTCTCTTGCAT
ATATacaaaaacgaaataaaaatatcaaaatatgaaatcagcaaactaaa
aaaaacattGCCATATTATATATCAACATACTACAGTAAGACAAAGTCTC
TTAAAAAAACAACGCAAGATTTAATACAAATTGAAATGGACTACAGAATT
TTATGAAGAGTTTTATGGAAAGACAAGAGTCCCTCAAATTTGACACCTGA
AGGATGTTTTTACTAAGAATGATaatgtatcatttttttttaatctaaac
ACAAAATAAATCTAGGTTCTAATCTAAAATACCAATAAATATATGTAATT
TTAATCTAAGTTGCAATAACACAAGCAAAATAATGTACTGTAAGATATTG
ATTGCAAAAACTGTTCAAATTCACAGCAGTGAAGTTTCTAAGAGACTTGA
TGATTGAGCTCGAACACTTATCAAATTGAAGATGGTCTTTTTGCTAATTT
GCGTTGTGAAACAatttaaagccttaaaatatccgatattattggaaatt
ttgtaaGCAAGGCATTTTATAGTGATCTACTAGGAATTGAATAAATTAAT
GATAAATTCCTAAATTGAAATGTTTCGCTTCACAAACATTTCATCTAATT
TACTGTCCAAGATTTTGCAAGTGCCTCTGATACCGTTACATACTTTTGAG
GCCCAAACAAAATATTCTTGTACTCGTTCTTCAGTCCAGCCTTTGGGAGT
CTGGCGTTCCAAGTCTCTCAAATTATATAATTTATCAGCAAGTTTAACAA
TTTTTGCTTCATAACTAACAAAAGGTGACTTGTCTATTTGAGCTTGTTTT
CGTTCTTctttgcttttgtttttatcaTCACTCACTTCATCAACAATAAG
TCTCATCTTGGAACCAAAAACATCCTCGATTTCATCCAAAGTTGTTTCAG
TATCCTCGACTGTATCATGCAAAACAGCTCCTACTAAAATATCAATATCT
GAAATATGAGCTTCGTCTGAAATAATTTGAGCAACTCCAACCGGATGATT
AATATAAGGTGTTTGATTTGGGTCTTTCCTTCTTTGATCTTTGTGTTTTA
TAGCAGCAAAGTCAATAGCTTTAAGCAAACGTTGAGTGTTGTTCAAGTCT
GAAGACATTTTAGAGTTGGACGCAGCTGCCATCTTGAATCTATGTTTATG
TTCTCTGATTTAATTCATGTCTCAACTACATGAAATATTTATATCCTTTC
GCGCTGAGAAATGATTACGTAATGTGGACCTGGTTTCTATCTCATGATAA
AAGTAAATGACAGTTATGTGCCTTTTATGGAGCTTTCAATCGGCTTTCAA
TGTACAAATGATCACCACAATGTCTTGACAACATTACAACAAAAA Coding sequence (CDS) from alignment at scaffold_52:44851..46395 >TCONS_00070309 ID=TCONS_00070309|Name=TCONS_00070309|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at scaffold_52:44851..46395 (Clytia hemisphaerica)
CTAAATTGAAATGTTTCGCTTCACAAACATTTCATCTAATTTACTGTCCA
AGATTTTGCAAGTGCCTCTGATACCGTTACATACTTTTGAGGCCCAAACA
AAATATTCTTGTACTCGTTCTTCAGTCCAGCCTTTGGGAGTCTGGCGTTC
CAAGTCTCTCAAATTATATAATTTATCAGCAAGTTTAACAATTTTTGCTT
CATAACTAACAAAAGGTGACTTGTCTATTTGAGCTTGTTTTCGTTCTTct
ttgcttttgtttttatcaTCACTCACTTCATCAACAATAAGTCTCATCTT
GGAACCAAAAACATCCTCGATTTCATCCAAAGTTGTTTCAGTATCCTCGA
CTGTATCATGCAAAACAGCTCCTACTAAAATATCAATATCTGAAATATGA
GCTTCGTCTGAAATAATTTGAGCAACTCCAACCGGATGATTAATATAAGG
TGTTTGATTTGGGTCTTTCCTTCTTTGATCTTTGTGTTTTATAGCAGCAA
AGTCAATAGCTTTAAGCAAACGTTGAGTGTTGTTCAAGTCTGAAGACATT
TTAGAGTTGGACGCAGCTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070309-exon-scaffold_52-1491911889:44851..46395 | TCONS_00070309-exon-scaffold_52-1491911889:44851..46395 | Clytia hemisphaerica | exon |
| TCONS_00070309-exon-scaffold_52-1510915933:44851..46395 | TCONS_00070309-exon-scaffold_52-1510915933:44851..46395 | Clytia hemisphaerica | exon |
| TCONS_00070309-exon-scaffold_52-1575043694:44851..46395 | TCONS_00070309-exon-scaffold_52-1575043694:44851..46395 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_52 | supercontig | scaffold_52:44851..46395 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003607 | HD/PDEase_dom |
Blast
BLAST of TCONS_00070309 vs. Swiss-Prot (Human)
Match: MESH1 (Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 OS=Homo sapiens GN=HDDC3 PE=1 SV=3) HSP 1 Score: 187.963 bits (476), Expect = 5.637e-56 Identity = 101/173 (58.38%), Postives = 137/173 (79.19%), Query Frame = 1
Query: 265 RLLKAIDFAAIKHKDQRRKDPNQTPYINHPVGVAQIISDEAHISDIDILVGAVLHXXXXXXXXXXXXXXXVFGSKMRLIVDEVSDDKNKSKEERKQAQIDKSPFVSYEAKIVKLADKLYNLRDLERQTPKGWTEERVQEYFVWASKVCNGIRGTCKILDSKLDEMFVKRNISI 783
+LL+A DFAA KH+ QRRKDP TPYINHP+GVA+I++ EA I+DI +L A+LHDTVEDT+TTLDE+E FG+++R +V+EV+DDK K ERK+ Q++++P S AK+VKLADKLYNLRDL R TP+GW+E RVQEYF WA++V G++GT + L+ L +F +R ++I
Sbjct: 7 QLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDTTLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRLQVEQAPHSSPGAKLVKLADKLYNLRDLNRCTPEGWSEHRVQEYFEWAAQVVKGLQGTNRQLEEALKHLFKQRGLTI 179
The following BLAST results are available for this feature:
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