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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070325 ID=TCONS_00070325|Name=TCONS_00070325|organism=Clytia hemisphaerica|type=transcript|length=938bp
TTGGGGCAGACTAGAAACTTATAAAATTGTCTGattaggctgaaattttg
caatcgaaacaaaatacaaaaatagtgaTCGACCTCATACACATTCTATT
CCATTTTGCCGAATTTTTGACTTCNTCCTTCCTTAAATCCTGCCCACAAA
TGTTGTCCAAGTGTGTCCCCTGTGCAGACAAAAACTTTTCCGAATACTTT
CACAACAACATTTCCACATGTCAAGTCTACCCCATTGTAAAGGGTTTTCA
AGTCATCGACAATTGGTTTCAAAATGCTATTTACACCGTATTGCTTCACA
AGGGTGCTTTTTGCAATGGCTAATAGTCTAACAGCAGAATGTCGAGAACG
AAACTTCGGAGAAAGATTTGCAACCGTATAGTAGTATAGATCTAATTTAT
GCTTTCCGGCTTTGCTTCCTAATGGATTGCACACTTCAATTTCGTCATGA
AAAATAATCAAAGCGATAGCATCTTTGTGATCTTGGAAGTATTTGTCATT
TTGGAACAGTTCACCAtcttgaaaatcaaataaaacatcTTTTGCACTAG
CTTGCGGTTCCCGCAACAGTTCTTTTCTCATCATTGAATCCTTTAATAAC
TGATGTAGACTTTCAATGATTGGAATGTAAATGAACGTATCTTGATCTTC
GACAATCACCTGTTTAGAACCTTTCTTTTTATACTTCATCTTGTTTCCCA
GAAAGATTTCTTTGAAAGATAACAAATCGTAATGTTCGGCGATGTAGCGA
TTTTGTAACGGTAATGTCTCAAGGCCCTCAAAAAGCCCAGGGTTTTCATC
GAATACATTTTCAGTCTCTTGTATGTGTGGAAAATTGTGCCTCTCAAGTA
CGCCTTTGATTTTCTCCTTCAATAAATGGTTTGAAATGGTTGATAGATAT
TTTGTACTCTCCATGATCGACTCCAATGACacctaaaa Run BLAST on NCBI protein sequence of TCONS_00070325-protein >TCONS_00070325-protein ID=TCONS_00070325-protein|Name=TCONS_00070325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MESTKYLSTISNHLLKEKIKGVLERHNFPHIQETENVFDENPGLFEGLET
LPLQNRYIAEHYDLLSFKEIFLGNKMKYKKKGSKQVIVEDQDTFIYIPII
ESLHQLLKDSMMRKELLREPQASAKDVLFDFQDGELFQNDKYFQDHKDAI
ALIIFHDEIEVCNPLGSKAGKHKLDLYYYTVANLSPKFRSRHSAVRLLAI
AKSTLVKQYGVNSILKPIVDDLKTLYNGVDLTCGNVVVKVFGKVFVCTGD
TLGQHLWAGFKEGXSQKFGKME Run BLAST on NCBI transcript from alignment at scaffold_53:270..1207 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070325 ID=TCONS_00070325|Name=TCONS_00070325|organism=Clytia hemisphaerica|type=transcript|length=938bp|location=Sequence derived from alignment at scaffold_53:270..1207 (Clytia hemisphaerica)
ttttaggtGTCATTGGAGTCGATCATGGAGAGTACAAAATATCTATCAAC
CATTTCAAACCATTTATTGAAGGAGAAAATCAAAGGCGTACTTGAGAGGC
ACAATTTTCCACACATACAAGAGACTGAAAATGTATTCGATGAAAACCCT
GGGCTTTTTGAGGGCCTTGAGACATTACCGTTACAAAATCGCTACATCGC
CGAACATTACGATTTGTTATCTTTCAAAGAAATCTTTCTGGGAAACAAGA
TGAAGTATAAAAAGAAAGGTTCTAAACAGGTGATTGTCGAAGATCAAGAT
ACGTTCATTTACATTCCAATCATTGAAAGTCTACATCAGTTATTAAAGGA
TTCAATGATGAGAAAAGAACTGTTGCGGGAACCGCAAGCTAGTGCAAAAg
atgttttatttgattttcaagaTGGTGAACTGTTCCAAAATGACAAATAC
TTCCAAGATCACAAAGATGCTATCGCTTTGATTATTTTTCATGACGAAAT
TGAAGTGTGCAATCCATTAGGAAGCAAAGCCGGAAAGCATAAATTAGATC
TATACTACTATACGGTTGCAAATCTTTCTCCGAAGTTTCGTTCTCGACAT
TCTGCTGTTAGACTATTAGCCATTGCAAAAAGCACCCTTGTGAAGCAATA
CGGTGTAAATAGCATTTTGAAACCAATTGTCGATGACTTGAAAACCCTTT
ACAATGGGGTAGACTTGACATGTGGAAATGTTGTTGTGAAAGTATTCGGA
AAAGTTTTTGTCTGCACAGGGGACACACTTGGACAACATTTGTGGGCAGG
ATTTAAGGAAGGANGAAGTCAAAAATTCGGCAAAATGGAATAGAATGTGT
ATGAGGTCGAtcactatttttgtattttgtttcgattgcaaaatttcagc
ctaatCAGACAATTTTATAAGTTTCTAGTCTGCCCCAA Coding sequence (CDS) from alignment at scaffold_53:270..1207 >TCONS_00070325 ID=TCONS_00070325|Name=TCONS_00070325|organism=Clytia hemisphaerica|type=CDS|length=819bp|location=Sequence derived from alignment at scaffold_53:270..1207 (Clytia hemisphaerica)
ATGGAGAGTACAAAATATCTATCAACCATTTCAAACCATTTATTGAAGGA
GAAAATCAAAGGCGTACTTGAGAGGCACAATTTTCCACACATACAAGAGA
CTGAAAATGTATTCGATGAAAACCCTGGGCTTTTTGAGGGCCTTGAGACA
TTACCGTTACAAAATCGCTACATCGCCGAACATTACGATTTGTTATCTTT
CAAAGAAATCTTTCTGGGAAACAAGATGAAGTATAAAAAGAAAGGTTCTA
AACAGGTGATTGTCGAAGATCAAGATACGTTCATTTACATTCCAATCATT
GAAAGTCTACATCAGTTATTAAAGGATTCAATGATGAGAAAAGAACTGTT
GCGGGAACCGCAAGCTAGTGCAAAAgatgttttatttgattttcaagaTG
GTGAACTGTTCCAAAATGACAAATACTTCCAAGATCACAAAGATGCTATC
GCTTTGATTATTTTTCATGACGAAATTGAAGTGTGCAATCCATTAGGAAG
CAAAGCCGGAAAGCATAAATTAGATCTATACTACTATACGGTTGCAAATC
TTTCTCCGAAGTTTCGTTCTCGACATTCTGCTGTTAGACTATTAGCCATT
GCAAAAAGCACCCTTGTGAAGCAATACGGTGTAAATAGCATTTTGAAACC
AATTGTCGATGACTTGAAAACCCTTTACAATGGGGTAGACTTGACATGTG
GAAATGTTGTTGTGAAAGTATTCGGAAAAGTTTTTGTCTGCACAGGGGAC
ACACTTGGACAACATTTGTGGGCAGGATTTAAGGAAGGANGAAGTCAAAA
ATTCGGCAAAATGGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070325-exon-scaffold_53-1491911889:270..1207 | TCONS_00070325-exon-scaffold_53-1491911889:270..1207 | Clytia hemisphaerica | exon |
| TCONS_00070325-exon-scaffold_53-1510915933:270..1207 | TCONS_00070325-exon-scaffold_53-1510915933:270..1207 | Clytia hemisphaerica | exon |
| TCONS_00070325-exon-scaffold_53-1575043694:270..1207 | TCONS_00070325-exon-scaffold_53-1575043694:270..1207 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_53 | supercontig | scaffold_53:270..1207 . |
Blast
The following BLAST results are available for this feature:
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