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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070336 ID=TCONS_00070336|Name=TCONS_00070336|organism=Clytia hemisphaerica|type=transcript|length=2911bp
GCATCGCGTAGTTAATATAAAactattctaataaaaaaacctGTTAGTTT
TAAAGTGCATCGGAATACTAAAATATTATATCAGCTCAATCTTTAAGAAA
GTACTTTTATGGTTCAGTAAAGAGGAACCGAAACTGAACTTCTCGGGAAT
GTTTGCTTTCCTATTTTCTTCCTATTCGTCCATTTAGATGGCTTTGACCC
ATTTTCGTTTACTGCGTTGTTGGAGAGAGCGTGCAACCTCTGGTCAAGTC
GAAGCGCGTCGTGTGCTAGCGGAGATGCTGACACCTTCAGGTGGTAATCG
AGCGAATTGTTACAAATTCATTTCGTGGGTGACGGGGTGTAGCAATTCGA
CTATTGGAAAAGTCAACGAGCAGATGAAAAGTACAGGCGGAGATCGGGAG
CCTCCGGAACACGGGCTGAAGAAATATTGGCGAGTCAATCCAAAGAGTGT
AGGATTGAACGGCGAGGAGACAGAAGAAACAGCTTTCGTTCCATCTTACC
AAATCCTTCAAACAGCTGCCAGTTCTGCTGGCCTCGCCCCTATGATGCAA
CAAAGTGCCGAGACCGAGAAACCGTTAGCCGAACCACAAAAGAAGAGAAC
GCGAAAGAAAGCTAAGAATAATACGGACATCAGTAAGAATGATGTTTGAC
GAACGAGTCTACTGTGACGGTACCGAACACAATGACACTACAAGCGCTTC
AAttacaacagcaacaacaattACAACTTCAAATTCAATTGCTTCAACAA
CAGCTACAAAACTCTCAAGCTACTCTAGCCGCCCAAGCACAGGCGGCCGC
CCAACAGGCGATACGCCAACCTATGGAAAATGCTGCTACAGAATATATAG
TAACACCAAGTGCAATTGAACAATCAGTCGGAAATCCTGTTGTAGTTCAA
GCAGTTACGACTCCCATTCAAGCGTCGGTTATACAACAAAACGTCGTGCC
ACAAAACCTTGTACCGAACGTTGTAAACACGGAGACAGTGATGCCTACAA
TCGTTGCTTCAGCTAACAATAATCCAGGACTGGCAGAGTTTCTTACACCA
ACGGCTAATATGAATAACATACTACAAGCCATCGGAAATAATCAAACCAA
AGTCACTCCAAATATATCGCTAATGACTTCTCCACTACGTAATACGAACA
ATgaaattaatattttgaccacGCTTGCTAATCCGGTTTCCCTCAATATG
TTGAACACTTCGAGCATTAGTAATCTTACGGACTCTTCACCGCTGACTGA
CCTCCGCGCGGCCGCCCAACAGGTGCATTTAATTGCCGCCACTCAGGCTC
CACCGACAGTAGCAGCTGTTAGTCAACCAATGACAATTTCTCTGCAACAA
CCTTCGATCTCTTTAGCTACATTACCCACAATGCTTTTCTCTTCCACAAC
ACACGATCCTTTAGTACAACCCACTGTCCAATCACATACACAGCAGCAAC
AACTTATCATTCAACAAACGGCCGCCACTACGCCTCAAATACAACGCGTG
ACTGAGCCTCAACACATGGTTTTACAACGTGCGATTACAAGTTACTCTAA
CCCTGTCGCTGCAACGAATCAGCTGATAGTCTATACAACACCTCAAACCC
CAGATACGAATAATACTTTAAATACAATGTTACCCCCTATAACGTCATTT
AACGCTGACGCTTTTCTGACGAGCGTTTCTAGCGGCGTTGGTACCGCTTA
CACTGTTGTACATAATACCTCAATGGCTGATTTGTAAATAATGAGACTGT
TTGTAAATATTATTGGAAAAGAAGTGAGACACTAATAAAATCGAAACATG
ATTTTctatgttttgaaattctttcaaGCTTTATAAGCTATAATAATgcg
aaataataataatttagaCAATTGAAAtaattgttaattttttttgtagt
gTATATAGAATGTTGTATCAgttaattatttaaaaattcgGTTTAGAAAA
TAAGGATGAATGACCTTCGAGTTAGAAAATACTATGTACCTCCTAAGCAT
TTCTTAAGTCCATTCGCTTTCAGTGTAGAAACCATACCATCGGAATtgag
atgagctggagtttttacaagatgcttaactgattggttatttttaaaca
atagggatgacgcgttctttagaaaaagtaataaaatcgtttgtctcaac
atttaacgaccaacagagtcatcaaagaacttgtaaaaactccagctagT
CCCTCGGAATTAGACTAATCccgtttgaaagtttttaaaaacaatggtAG
AAAAATGAGTGAACACTTAAAGCTAGAGAATTTACTATTTACTAGACCTA
TAGatatacacgttgttttttataagaacaaactgtataagaacataagg
cttcgatgaccaaaatatcaagaacaagttaagaacatattaaggctTCG
TAAAacatccgatttcttaggagaatggacaaaaatactcaaaaaacggt
gacaataagaacatgttaagaatatttttaggcttaaaactcaaaaagtt
aagaacatcgaaaggtttcaaaatttttggatgttcttataaaaaacgtg
tataatctTTACAAGAGGTTTATTCGTTAGAGTATGAGTAGGAAAGCCTG
TTAAAATTCTAGTTCCATTAAAAATCATCGTTCTAACGACCACCTTAATT
TATACGGTCATCGGGTCATAATCCAAACCACCAGGCCACACACATCTCAA
CTTTTCAGCATCAAAATATCTTGGTTTCTCACACACACCGCAACCCATTG
TTGTTCCATGCCAACATGCTAAGAATTTATGTTTATCGGTGGGATGAACT
GCATTACCCAACCAACTTTGGCTCATTTTGGAGCACAAGTCTGGACATTC
CTCAATGGCCTTTTGTTGTTCTTCTTTGGTGGGTGTCTCGTACTCGcatg
ctaaaaaaata Run BLAST on NCBI protein sequence of TCONS_00070336-protein >TCONS_00070336-protein ID=TCONS_00070336-protein|Name=TCONS_00070336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MTLQALQLQQQQQLQLQIQLLQQQLQNSQATLAAQAQAAAQQAIRQPMEN
AATEYIVTPSAIEQSVGNPVVVQAVTTPIQASVIQQNVVPQNLVPNVVNT
ETVMPTIVASANNNPGLAEFLTPTANMNNILQAIGNNQTKVTPNISLMTS
PLRNTNNEINILTTLANPVSLNMLNTSSISNLTDSSPLTDLRAAAQQVHL
IAATQAPPTVAAVSQPMTISLQQPSISLATLPTMLFSSTTHDPLVQPTVQ
SHTQQQQLIIQQTAATTPQIQRVTEPQHMVLQRAITSYSNPVAATNQLIV
YTTPQTPDTNNTLNTMLPPITSFNADAFLTSVSSGVGTAYTVVHNTSMAD
L Run BLAST on NCBI transcript from alignment at scaffold_54:32417..35797+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070336 ID=TCONS_00070336|Name=TCONS_00070336|organism=Clytia hemisphaerica|type=transcript|length=3381bp|location=Sequence derived from alignment at scaffold_54:32417..35797+ (Clytia hemisphaerica)
GCATCGCGTAGTTAATATAAAactattctaataaaaaaacctGTTAGTTT
TAAAGTGCATCGGAATACTAAAATATTATATCAGCTCAATCTTTAAGAAA
GTACTTTTATGGTTCAGTAAAGAGGAACCGAAACTGAACTTCTCGGGAAT
GTTTGCTTTCCTATTTTCTTCCTATTCGTCCATTTAGATGGCTTTGACCC
ATTTTCGTTTACTGCGTTGTTGGAGAGAGCGTGCAACCTCTGGTCAAGTC
GAAGCGCGTCGTGTGCTAGCGGAGATGCTGACACCTTCAGGTGGTAATCG
AGCGAATTGTTACAAATTCATTTCGTGGGTGACGGGGTGTAGCAATTCGA
CTATTGGAAAAGTCAACGAGCAGATGAAAAGTACAGGTACGTCGACTCAT
AAGGAGTATTTATATTGGAACAATTTTATCACAAAATTCGCGTTTTTTCG
ATACCACTTTTAGAATATACCTTTTCTACATTATTCATATTCATGTGTAT
AACCGTTGAAATTCTAGTTCAATGgttcaaaatgtttttactACTCTTTC
TTTTTAGGTGTCTAAATTTCAAATCTTTCCTTGCAAAATGATCTGGAAGT
TTTTCTGTTTTGATACTTATCAAtctgaaacatttttcttttcttcgcTA
GGCGGAGATCGGGAGCCTCCGGAACACGGGCTGAAGAAATATTGGCGAGT
CAATCCAAAGAGTGTAGGATTGAACGGCGAGGAGACAGAAGAAACAGCTT
TCGTTCCATCTTACCAAATCCTTCAAACAGCTGCCAGTTCTGCTGGCCTC
GCCCCTATGATGCAACAAAGTGCCGAGACCGAGAAACCGTTAGCCGAACC
ACAAAAGAAGAGAACGCGAAAGAAAGCTAAGAATAATACGGACATCAGTA
AGAATGATGTAGGAGTTGTACTGATGGGGgagaaaattgatttcaattct
GCGAGAACGGGAGGTCGTATCCCGGCCAATATCAAGATAGTCGAAAACAC
TGATTCACTTGTCTCAATGTCTGCTCAAAACACAAACTTATCCACTTATC
CATCGGCTGTTATTGCAGTTAATGGACAATTCTCAAATAACGGGTTTATT
TCGATACCGGCAGGTTTGACGAACGAGTCTACTGTGACGGTACCGAACAC
AATGACACTACAAGCGCTTCAAttacaacagcaacaacaattACAACTTC
AAATTCAATTGCTTCAACAACAGCTACAAAACTCTCAAGCTACTCTAGCC
GCCCAAGCACAGGCGGCCGCCCAACAGGCGATACGCCAACCTATGGAAAA
TGCTGCTACAGAATATATAGTAACACCAAGTGCAATTGAACAATCAGTCG
GAAATCCTGTTGTAGTTCAAGCAGTTACGACTCCCATTCAAGCGTCGGTT
ATACAACAAAACGTCGTGCCACAAAACCTTGTACCGAACGTTGTAAACAC
GGAGACAGTGATGCCTACAATCGTTGCTTCAGCTAACAATAATCCAGGAC
TGGCAGAGTTTCTTACACCAACGGCTAATATGAATAACATACTACAAGCC
ATCGGAAATAATCAAACCAAAGTCACTCCAAATATATCGCTAATGACTTC
TCCACTACGTAATACGAACAATgaaattaatattttgaccacGCTTGCTA
ATCCGGTTTCCCTCAATATGTTGAACACTTCGAGCATTAGTAATCTTACG
GACTCTTCACCGCTGACTGACCTCCGCGCGGCCGCCCAACAGGTGCATTT
AATTGCCGCCACTCAGGCTCCACCGACAGTAGCAGCTGTTAGTCAACCAA
TGACAATTTCTCTGCAACAACCTTCGATCTCTTTAGCTACATTACCCACA
ATGCTTTTCTCTTCCACAACACACGATCCTTTAGTACAACCCACTGTCCA
ATCACATACACAGCAGCAACAACTTATCATTCAACAAACGGCCGCCACTA
CGCCTCAAATACAACGCGTGACTGAGCCTCAACACATGGTTTTACAACGT
GCGATTACAAGTTACTCTAACCCTGTCGCTGCAACGAATCAGCTGATAGT
CTATACAACACCTCAAACCCCAGATACGAATAATACTTTAAATACAATGT
TACCCCCTATAACGTCATTTAACGCTGACGCTTTTCTGACGAGCGTTTCT
AGCGGCGTTGGTACCGCTTACACTGTTGTACATAATACCTCAATGGCTGA
TTTGTAAATAATGAGACTGTTTGTAAATATTATTGGAAAAGAAGTGAGAC
ACTAATAAAATCGAAACATGATTTTctatgttttgaaattctttcaaGCT
TTATAAGCTATAATAATgcgaaataataataatttagaCAATTGAAAtaa
ttgttaattttttttgtagtgTATATAGAATGTTGTATCAgttaattatt
taaaaattcgGTTTAGAAAATAAGGATGAATGACCTTCGAGTTAGAAAAT
ACTATGTACCTCCTAAGCATTTCTTAAGTCCATTCGCTTTCAGTGTAGAA
ACCATACCATCGGAATtgagatgagctggagtttttacaagatgcttaac
tgattggttatttttaaacaatagggatgacgcgttctttagaaaaagta
ataaaatcgtttgtctcaacatttaacgaccaacagagtcatcaaagaac
ttgtaaaaactccagctagTCCCTCGGAATTAGACTAATCccgtttgaaa
gtttttaaaaacaatggtAGAAAAATGAGTGAACACTTAAAGCTAGAGAA
TTTACTATTTACTAGACCTATAGatatacacgttgttttttataagaaca
aactgtataagaacataaggcttcgatgaccaaaatatcaagaacaagtt
aagaacatattaaggctTCGTAAAacatccgatttcttaggagaatggac
aaaaatactcaaaaaacggtgacaataagaacatgttaagaatattttta
ggcttaaaactcaaaaagttaagaacatcgaaaggtttcaaaatttttgg
atgttcttataaaaaacgtgtataatctTTACAAGAGGTTTATTCGTTAG
AGTATGAGTAGGAAAGCCTGTTAAAATTCTAGTTCCATTAAAAATCATCG
TTCTAACGACCACCTTAATTTATACGGTCATCGGGTCATAATCCAAACCA
CCAGGCCACACACATCTCAACTTTTCAGCATCAAAATATCTTGGTTTCTC
ACACACACCGCAACCCATTGTTGTTCCATGCCAACATGCTAAGAATTTAT
GTTTATCGGTGGGATGAACTGCATTACCCAACCAACTTTGGCTCATTTTG
GAGCACAAGTCTGGACATTCCTCAATGGCCTTTTGTTGTTCTTCTTTGGT
GGGTGTCTCGTACTCGcatgctaaaaaaata Coding sequence (CDS) from alignment at scaffold_54:32417..35797+ >TCONS_00070336 ID=TCONS_00070336|Name=TCONS_00070336|organism=Clytia hemisphaerica|type=CDS|length=1056bp|location=Sequence derived from alignment at scaffold_54:32417..35797+ (Clytia hemisphaerica)
ATGACACTACAAGCGCTTCAAttacaacagcaacaacaattACAACTTCA
AATTCAATTGCTTCAACAACAGCTACAAAACTCTCAAGCTACTCTAGCCG
CCCAAGCACAGGCGGCCGCCCAACAGGCGATACGCCAACCTATGGAAAAT
GCTGCTACAGAATATATAGTAACACCAAGTGCAATTGAACAATCAGTCGG
AAATCCTGTTGTAGTTCAAGCAGTTACGACTCCCATTCAAGCGTCGGTTA
TACAACAAAACGTCGTGCCACAAAACCTTGTACCGAACGTTGTAAACACG
GAGACAGTGATGCCTACAATCGTTGCTTCAGCTAACAATAATCCAGGACT
GGCAGAGTTTCTTACACCAACGGCTAATATGAATAACATACTACAAGCCA
TCGGAAATAATCAAACCAAAGTCACTCCAAATATATCGCTAATGACTTCT
CCACTACGTAATACGAACAATgaaattaatattttgaccacGCTTGCTAA
TCCGGTTTCCCTCAATATGTTGAACACTTCGAGCATTAGTAATCTTACGG
ACTCTTCACCGCTGACTGACCTCCGCGCGGCCGCCCAACAGGTGCATTTA
ATTGCCGCCACTCAGGCTCCACCGACAGTAGCAGCTGTTAGTCAACCAAT
GACAATTTCTCTGCAACAACCTTCGATCTCTTTAGCTACATTACCCACAA
TGCTTTTCTCTTCCACAACACACGATCCTTTAGTACAACCCACTGTCCAA
TCACATACACAGCAGCAACAACTTATCATTCAACAAACGGCCGCCACTAC
GCCTCAAATACAACGCGTGACTGAGCCTCAACACATGGTTTTACAACGTG
CGATTACAAGTTACTCTAACCCTGTCGCTGCAACGAATCAGCTGATAGTC
TATACAACACCTCAAACCCCAGATACGAATAATACTTTAAATACAATGTT
ACCCCCTATAACGTCATTTAACGCTGACGCTTTTCTGACGAGCGTTTCTA
GCGGCGTTGGTACCGCTTACACTGTTGTACATAATACCTCAATGGCTGAT
TTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070336-exon-scaffold_54-1491911889:32417..32802 | TCONS_00070336-exon-scaffold_54-1491911889:32417..32802 | Clytia hemisphaerica | exon |
| TCONS_00070336-exon-scaffold_54-1510915933:32417..32802 | TCONS_00070336-exon-scaffold_54-1510915933:32417..32802 | Clytia hemisphaerica | exon |
| TCONS_00070336-exon-scaffold_54-1575043694:32417..32802 | TCONS_00070336-exon-scaffold_54-1575043694:32417..32802 | Clytia hemisphaerica | exon |
| TCONS_00070336-exon-scaffold_54-1491911889:33068..33324 | TCONS_00070336-exon-scaffold_54-1491911889:33068..33324 | Clytia hemisphaerica | exon |
| TCONS_00070336-exon-scaffold_54-1510915933:33068..33324 | TCONS_00070336-exon-scaffold_54-1510915933:33068..33324 | Clytia hemisphaerica | exon |
| TCONS_00070336-exon-scaffold_54-1575043694:33068..33324 | TCONS_00070336-exon-scaffold_54-1575043694:33068..33324 | Clytia hemisphaerica | exon |
| TCONS_00070336-exon-scaffold_54-1491911889:33530..35797 | TCONS_00070336-exon-scaffold_54-1491911889:33530..35797 | Clytia hemisphaerica | exon |
| TCONS_00070336-exon-scaffold_54-1510915933:33530..35797 | TCONS_00070336-exon-scaffold_54-1510915933:33530..35797 | Clytia hemisphaerica | exon |
| TCONS_00070336-exon-scaffold_54-1575043694:33530..35797 | TCONS_00070336-exon-scaffold_54-1575043694:33530..35797 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_54 | supercontig | scaffold_54:32417..35797 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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