TCONS_00070343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070343
Unique NameTCONS_00070343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070343 ID=TCONS_00070343|Name=TCONS_00070343|organism=Clytia hemisphaerica|type=transcript|length=1343bp
GCTTGCCTTTGCTGACAATTtaatgggacaagctggagcttttacaagct
cttatttgatttggttggtcgttaagatgtaataaaagaacgCGTcgtct
ctatcactttaaatgaccaattagtgaagtatcttgtaagtcttgtaaaa
actccaggtCATCCCAATTTAATGACAAATCTTGTTTCATGCGTTGTGCG
AGACAAACAAGAGCAAAAAACTTCCTTTCTAATAGCTGGTAGACTGCCAA
CTACTTCAGTATAAATACCCACCATTTCAATCAAAATACTTCATTCGATT
CAAGTTTAAGCTACAGCAAAGATACTTTAAAAGGGTGCGTAAAGTCCACg
tgagaaaaatgaagattatCTTGTTATTTGCAACAATGGCGCTATTTTGC
TGGAGTGAAACTGAGGCGTGTAGTGGAGGCGGTGGTGACAGTGGGCGGAT
ATGGATTGGCGGTTGTTGGGCGACATTGAGCCGCTGCACGCACTGGAGTA
ATTCTTTGACCGAAATCATGAGTAAGTCGTGCAATGACCGATGTAAAGAT
CTTGGCAAGTCTGGTGGTAGCTGCAAACTTTCGACATCGAATTGCCCGGC
ATCGAATAATCCTTATCAATGCCAGTGTtattaaaactttcttttaatga
CGACCCTCTTGTGGTTGTGTCACATAATGTATAACATAATGTATAACTTT
TATAAcattaatgtataacttttatAACATTAGTATTGAAAGATATTTCC
TTGGGCCAATAATTCAATGGTGAAAAGGAACAGAAATAAGGGTGTTTGAA
CGTGTTCTAGATTTACACTCTGATGGTGACCTCTTGTAGCGGAGGTCGAA
tatatagtttttaaataaaacatGGTTATTACATTGTTCTGGTTATTCTT
TTCACCATTATATATAACATTagtataatttgtttaccttaaAGTTCTGT
TTACTTCATATTTACTCTTGGTTGTTATTATCAAATAAATTGATTGTTTA
TCACTTATCTTAAAGTTTATTTACTCGCGTTCAGCGGCACTCTTTCCGGC
GTGTTGCGATGACGGATAGCGTCTAGTACTATTACAGTACAGTGTAATTT
GTAGTGTTATCCAATATTTTTCAGTATTTCAAAACCTTTTGCTAATCTTG
TTGCACTtgcccgggggtactaggtttgcgagaagacgtttttgggaccc
ttaggaACCCTTAAAGACTTTTCTATTGTTGTCGATTTTTAGTTGATATT
tgtacaaatttttgaaaatcacgacccttcgagagaggaaatttcgattt
tcgtgaatttggATCCTTACCCTTACCCTTGACTCGATTTGCT
Run BLAST on NCBI

transcript from alignment at scaffold_54:39165..40656-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070343 ID=TCONS_00070343|Name=TCONS_00070343|organism=Clytia hemisphaerica|type=transcript|length=1492bp|location=Sequence derived from alignment at scaffold_54:39165..40656- (Clytia hemisphaerica)
GCTTGCCTTTGCTGACAATTTAATGGGACAAGCTGGAGCTTTTACAAGCT
CTTATTTGATTTGGTTGGTCGTTAAGATGTAATAAAAGAACGCGTCGTCT
CTATCACTTTAAATGACCAATTAGTGAAGTATCTTGTAAGTCTTGTAAAA
ACTCCAGGTCATCCCAATTTAATGACAAATCTTGTTTCATGCGTTGTGCG
AGACAAACAAGAGCAAAAAACTTCCTTTCTAATAGCTGGTAGACTGCCAA
CTACTTCAGTATAAATACCCACCATTTCAATCAAAATACTTCATTCGATT
CAAGTTTAAGCTACAGCAAAGATACTTTAAAAGGTAGGTGTTAATTGCCT
CGAAAATAAAGGAACAGAATTAAATTTATTAATGCTGTATTCTAACTATC
ATATCTTTAAAACAATTTTCAGACTGCCGGGAAGATTTTCACGAAACGTG
AAAATATATACGATCTTTCCTCATATTTTTAGGGTGCGTAAAGTCCACGT
GAGAAAAATGAAGATTATCTTGTTATTTGCAACAATGGCGCTATTTTGCT
GGAGTGAAACTGAGGCGTGTAGTGGAGGCGGTGGTGACAGTGGGCGGATA
TGGATTGGCGGTTGTTGGGCGACATTGAGCCGCTGCACGCACTGGAGTAA
TTCTTTGACCGAAATCATGAGTAAGTCGTGCAATGACCGATGTAAAGATC
TTGGCAAGTCTGGTGGTAGCTGCAAACTTTCGACATCGAATTGCCCGGCA
TCGAATAATCCTTATCAATGCCAGTGTTATTAAAACTTTCTTTTAATGAC
GACCCTCTTGTGGTTGTGTCACATAATGTATAACATAATGTATAACTTTT
ATAACATTAATGTATAACTTTTATAACATTAGTATTGAAAGATATTTCCT
TGGGCCAATAATTCAATGGTGAAAAGGAACAGAAATAAGGGTGTTTGAAC
GTGTTCTAGATTTACACTCTGATGGTGACCTCTTGTAGCGGAGGTCGAAT
ATATAGTTTTTAAATAAAACATGGTTATTACATTGTTCTGGTTATTCTTT
TCACCATTATATATAACATTAGTATAATTTGTTTACCTTAAAGTTCTGTT
TACTTCATATTTACTCTTGGTTGTTATTATCAAATAAATTGATTGTTTAT
CACTTATCTTAAAGTTTATTTACTCGCGTTCAGCGGCACTCTTTCCGGCG
TGTTGCGATGACGGATAGCGTCTAGTACTATTACAGTACAGTGTAATTTG
TAGTGTTATCCAATATTTTTCAGTATTTCAAAACCTTTTGCTAATCTTGT
TGCACTTGCCCGGGGGTACTAGGTTTGCGAGAAGACGTTTTTGGGACCCT
TAGGAACCCTTAAAGACTTTTCTATTGTTGTCGATTTTTAGTTGATATTT
GTACAAATTTTTGAAAATCACGACCCTTCGAGAGAGGAAATTTCGATTTT
CGTGAATTTGGATCCTTACCCTTACCCTTGACTCGATTTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043814XLOC_043814Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070343-exon-scaffold_54-1575043694:40324..40656TCONS_00070343-exon-scaffold_54-1575043694:40324..40656Clytia hemisphaericaexon
TCONS_00070343-exon-scaffold_54-1575043694:39165..40174TCONS_00070343-exon-scaffold_54-1575043694:39165..40174Clytia hemisphaericaexon
TCONS_00070343-exon-scaffold_54-1510915933:40324..40656TCONS_00070343-exon-scaffold_54-1510915933:40324..40656Clytia hemisphaericaexon
TCONS_00070343-exon-scaffold_54-1510915933:39165..40174TCONS_00070343-exon-scaffold_54-1510915933:39165..40174Clytia hemisphaericaexon
TCONS_00070343-exon-scaffold_54-1491911889:40324..40656TCONS_00070343-exon-scaffold_54-1491911889:40324..40656Clytia hemisphaericaexon
TCONS_00070343-exon-scaffold_54-1491911889:39165..40174TCONS_00070343-exon-scaffold_54-1491911889:39165..40174Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_54supercontigscaffold_54:39165..40656 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.525978	0.64651	0.632219	0.422044	0.266801	0.321857	0.37664	0.770478	1.59959	1.37332	1.45032	36.8375	38.236	2.26818	2.34424	0.74889	0.657783	10.6022	49.617	0.276082	0.403509	25.0336	16.49	35.0707	37.9007	239.121	299.279	1.90432	1.10725
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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