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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070348 ID=TCONS_00070348|Name=TCONS_00070348|organism=Clytia hemisphaerica|type=transcript|length=551bp
TTGAAGCTGGTTGACTGATTTTCAAAGCCGCGCAAGAGTAAGAAAGGatc
aaaatgaagcaattctacTTTGAGGAAGTATGATCAAACGTATGGCTTCT
GCTTTATGGTACGTACCCACTGAAAACAATATGTATGAAGATTATGAAGA
TGCTGTTGActtaaatgtcaaaaataatgaACCATTGGATAGTAACCCAA
CATGGAGAAGTTCAAGAAAAGCTTGGCTCAAAGTATCAATTTTGCAAGCC
AAAGAGTTACCTGCAATGGACCCTGGGCCAAATGGGAAAGCTGACCCTTA
CTGTATCGTCAAATTTGGTAATGAGGAGCATATCACTACAGTTCAGCAAC
GTACAACAGAACCTGTCTGGAATGAAACATTCATATTTGAAGTGGATAAT
ATCCCACAAACAGCATTTCCCTTCTCAGCCAATGCGCGGAATTCAAATGG
GAAGTTAAAGATNggcccccccccccctttcttaagggggggggatgaca
ccttccaaaaaagtgaagaaggggaggtcagaaattttcattaaaaaggg
g Run BLAST on NCBI protein sequence of TCONS_00070348-protein >TCONS_00070348-protein ID=TCONS_00070348-protein|Name=TCONS_00070348-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MIKRMASALWYVPTENNMYEDYEDAVDLNVKNNEPLDSNPTWRSSRKAWL
KVSILQAKELPAMDPGPNGKADPYCIVKFGNEEHITTVQQRTTEPVWNET
FIFEVDNIPQTAFPFSANARNSNGKLKXGPPPPFLRGGDDTFQKSEEGEV
RNFH Run BLAST on NCBI transcript from alignment at scaffold_54:68838..71027- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070348 ID=TCONS_00070348|Name=TCONS_00070348|organism=Clytia hemisphaerica|type=transcript|length=2190bp|location=Sequence derived from alignment at scaffold_54:68838..71027- (Clytia hemisphaerica)
TTGAAGCTGGTTGACTGATTTTCAAAGCCGCGCAAGGTAAACCCCAATTT
TTGGTTTTCGCGCATGCACCCTACCTTGCCATGTGACTTNAATTTGATGT
AATGAACACCGTATTATTATGAAAAAATACACCATTTCTCTTTCGCACCG
AGTAGGCTTTTAAATCGAAATATGAAAAAAAAATCTGCAGTGTAACACAC
GCGAATGGCTGGAATGAAGAAGACCAAATTAGTGGCAAAACGATGGAGCG
CTTGCAGGCGCTTGACCTCACTTGCACGGCGAGTTACACACTCATTATTT
GTTAATCCCGTTGGGCGATAGGCGGTTATTAGGCAGCGGATGTTCTCTAT
TTCTCCAATCGGCGTTCGGTCATTTTANAAGCCGCGCAAGGTAAACCCCA
ATTTTTGGTTTTCGCGCATGCACCCTACCTTGCCATGTGACTTACTGATC
TTCCTTGACCTATTTGTCATTTGCCCATACTGTGTAAGAAATTCTAGAAG
CAGCATGTGATAGATTGTAGCCTAATCTTACCCAGGGTTTACTAAAAAAC
CGCAATTGAAAAGATTAACTAGCTCATTAGCGACAGCCATTTGTTTCTAT
GTGGGTCAAGAATTTTCCTGTGTCATAAACCAGCGCTAATTCGAAAAACA
TCATCTTTGGAAAGAAAAGAGATATAGATGCAGTTTTTTTTATTTGTTTT
CTGATAATTTCTGATTGAACTAAAAAAAGAACTAAAAGATTTGAATGATT
TTAAAGGTAAGTACTACTGCATTGAAGTTCATTTTGGTGAATTCTTCCTT
GTTCCGCGACAAAAATCCCGACAAGTGCGCACCCTACTACTTTAGGGCTA
AAGTCAGTTAGTCGCACTAGGAAATCAAGGTTTTAGAAATAACAACATCC
GTCATCTACAGGATGTATTTGAAACAACAAGGGTGAGAGTTACCTGAATC
AAGTTGAAGATCCCAAGACAATTAAGTAAAAATCGAAAGCTTGAAGCAAA
ACATAATGACCAATTTAACGTGAAGCATCCAGCTTACAAACCAACCAAAA
TTTGTTATTCAATTCCCGGGATAGTGCCCCAACTGCAAGGCCTTGATTAC
ACTCTAAACTAAAAATAATTCCACACATGTAAATGGGTCGGTGTATGAGT
GCTAAACCTAAACATAACTAATTTTAAGACTGTGACTCTTAATAGTATGA
CTGGCCAAAAACTTTCACATGAAAAGAACAGCAAAAGTTCAACAAGTTTA
AACATTTTCTGCTCGTTTTTCCACTTATATAATGTGTAAATCATTCTTCA
CTTTCTAGAGTAAGAAAGGATCAAAATGAAGCAATTCTACTTTGAGGAAG
TATGATCAAACGTATGGCTTCTGCTTTATGGTACGTACCCACTGAAAACA
ATATGTATGAAGATTATGAAGATGCTGTTGACTTAAATGTCAAAAATAAT
GAACCATTGGATAGTAACCCAACATGGAGAAGTTCAAGAAAAGCTTGGCT
CAAAGTATCAAGTAGGTAATTTCTTTGCTTTTTGTCCCTGGCGAGACATG
CCCCAGGACATTACAATTACATTTTCAGCGTCACATTTTTCTTTTCTTTT
TTCAGACAAAATAATATTTCTTTGTAAGATCTTATTTTTTTTTACCTAAT
CGAATTTGAAAATTATGGTCTTGTTCAGTTGATATTTGATTACCTTCAAC
TATCGAATTTCAATAAATCAACCATCAAATTTCAATAAAATATCAATTCT
GTTTGATTGAGATTGTTCAGACATCATCTCAATTTAATATTACTTTTTTC
TGATAACTGATAAGAAACACTATTCCATAAGTTCTGTTACACTGTAACTC
AATAATGTGCTAAATTGATCCATTCTAGTTTTGCAAGCCAAAGAGTTACC
TGCAATGGACCCTGGGCCAAATGGGAAAGCTGACCCTTACTGTATCGTCA
AATTTGGTAATGAGGAGCATATCACTACAGTTCAGCAACGTACAACAGAA
CCTGTCTGGAATGAAACATTCATATTTGAAGTGGATAATATCCCACAAAC
AGCATTTCCCTTCTCAGCCAATGCGCGGAATTCAAATGGGAAGTTAAAGA
TNGGCCCCCCCCCCCCTTTCTTAAGGGGGGGGGATGACACCTTCCAAAAA
AGTGAAGAAGGGGAGGTCAGAAATTTTCATTAAAAAGGGG Coding sequence (CDS) from alignment at scaffold_54:68838..71027- >TCONS_00070348 ID=TCONS_00070348|Name=TCONS_00070348|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_54:68838..71027- (Clytia hemisphaerica)
TTTTGCAAGCCAAAGAGTTACCTGCAATGGACCCTGGGCCAAATGGGAAA
GCTGACCCTTACTGTATCGTCAAATTTGGTAATGAGGAGCATATCACTAC
AGTTCAGCAACGTACAACAGAACCTGTCTGGAATGAAACATTCATATTTG
AAGTGGATAATATCCCACAAACAGCATTTCCCTTCTCAGCCAATGCGCGG
AATTCAAATGGGAAGTTAAAGATNGGCCCCCCCCCCCCTTTCTTAAGGGG
GGGGGATGACACCTTCCAAAAAAGTGAAGAAGGGGAGGTCAGAAATTTTC
ATTAAATGATCAAACGTATGGCTTCTGCTTTATGGTACGTACCCACTGAA
AACAATATGTATGAAGATTATGAAGATGCTGTTGACTTAAATGTCAAAAA
TAATGAACCATTGGATAGTAACCCAACATGGAGAAGTTCAAGAAAAGCTT
GGCTCAAAGTATCAATTTTGCAAGCCAAAGAGTTACCTGCAATGGACCCT
GGGCCAAATGGGAAAGCTGACCCTTACTGTATCGTCAAATTTGGTAATGA
GGAGCATATCACTACAGTTCAGCAACGTACAACAGAACCTGTCTGGAATG
AAACATTCATATTTGAAGTGGATAATATCCCACAAACAGCATTTCCCTTC
TCAGCCAATGCGCGGAATTCAAATGGGAAGTTAAAGATNGGCCCCCCCCC
CCCTTTCTTAAGGGGGGGGGATGACACCTTCCAAAAAAGTGAAGAAGGGG
AGGTCAGAAATTTTCATTAAATGATCAAACGTATGGCTTCTGCTTTATGG
TACGTACCCACTGAAAACAATATGTATGAAGATTATGAAGATGCTGTTGA
CTTAAATGTCAAAAATAATGAACCATTGGATAGTAACCCAACATGGAGAA
GTTCAAGAAAAGCTTGGCTCAAAGTATCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070348-exon-scaffold_54-1575043694:70992..71027 | TCONS_00070348-exon-scaffold_54-1575043694:70992..71027 | Clytia hemisphaerica | exon |
| TCONS_00070348-exon-scaffold_54-1575043694:69517..69719 | TCONS_00070348-exon-scaffold_54-1575043694:69517..69719 | Clytia hemisphaerica | exon |
| TCONS_00070348-exon-scaffold_54-1575043694:68838..69149 | TCONS_00070348-exon-scaffold_54-1575043694:68838..69149 | Clytia hemisphaerica | exon |
| TCONS_00070348-exon-scaffold_54-1510915933:70992..71027 | TCONS_00070348-exon-scaffold_54-1510915933:70992..71027 | Clytia hemisphaerica | exon |
| TCONS_00070348-exon-scaffold_54-1510915933:69517..69719 | TCONS_00070348-exon-scaffold_54-1510915933:69517..69719 | Clytia hemisphaerica | exon |
| TCONS_00070348-exon-scaffold_54-1510915933:68838..69149 | TCONS_00070348-exon-scaffold_54-1510915933:68838..69149 | Clytia hemisphaerica | exon |
| TCONS_00070348-exon-scaffold_54-1491911889:70992..71027 | TCONS_00070348-exon-scaffold_54-1491911889:70992..71027 | Clytia hemisphaerica | exon |
| TCONS_00070348-exon-scaffold_54-1491911889:69517..69719 | TCONS_00070348-exon-scaffold_54-1491911889:69517..69719 | Clytia hemisphaerica | exon |
| TCONS_00070348-exon-scaffold_54-1491911889:68838..69149 | TCONS_00070348-exon-scaffold_54-1491911889:68838..69149 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_54 | supercontig | scaffold_54:68838..71027 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000008 | C2_dom |
Blast
The following BLAST results are available for this feature:
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