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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070351 ID=TCONS_00070351|Name=TCONS_00070351|organism=Clytia hemisphaerica|type=transcript|length=1162bp
ccgacccttatcgtccacacatacccagcacccatttttgtcATAGTACC
CACCCTTGGTGTCAATATCAAGTCAATCAAGATATATaagtattttgaaa
tttgtgtAAAATGCATGCCATTAATTTTCAAATCGCGATATCTTCAGAAT
TGATGAAactgaaatttttgctgtggtCATTTTCATTATGCTCTACCAGA
TCCAAATCCCAGGACCCCATGGTTACGCTATACAATTTCTCTTCTCTTAA
AACAGGAAAAAGTTTATTGACACTGTTACTTCTTTTTCTTACCAAAGGTA
ACAATGGACAAAATCATTGATAACACCTCCAGTCTTGTCAACCAATACAT
AGATGTTGTGAAACAGGAAATTACCAAGAAAGAGCAATCAAATCAACCAA
TTACATTAGAAACCATATCAGAAATCTTTGAACAAGTTGGAAACATATTT
GATGGTGTATCCACCGAAGCTCAACATAAATCGTTTGTCAAAAGCAACTT
ACCTTATGTTGATCCACAAAAAGTTGAACTTGGTACACGCTTGGCCAGGA
AAAGAAAACACTCAGAAACTACTATTTACAACAAAGAGGAAACATTCATG
TATGTTCCTTTGTTAGATAGTCTTAAGCAGATGCTTGGAAACCACAAACT
AGCACATTTACTTCTTAAAAAGCCATTTCAATGCAGAGAAGGAGTGTTTT
ATGACCTTTTTGATGGTTCTTTCTTCAAAGATGACCCTTATTTTTCCGAA
CATCCGAATGCCCTTATTCTCATTTTATATCATGACGAATTGGAAATCTG
CAATCCTCTTGGAAGCGCTACTGGTGTTCATAAAATAGACATGTACTATT
ATTGTATTGCCAATCTTCCTTTAAAATACCGTTCACGTCATTGTGCTGTG
AAACTTCTGGCTATTGCAAATGCAGCGCTGGTAAAAAAGTATGGCATAGA
AAAAATTCTCTCGCCAATAATTGAAGATCTAAAAAAGCTTTATCATGGTC
ATGAAATAGAGTTTGATAATGGTAGAAACTTAACTCTGTATGGGAAAGTG
CTTGTCTGCCTTGGTGATAATCCTGGGCAAAATCTATGGGGTGGATTTAA
AGAAAGCTGTGGGGGAGCTTATCAAAAATGTAGAGGATGTTACTGTGATT
TTGATTCCTTAC Run BLAST on NCBI protein sequence of TCONS_00070351-protein >TCONS_00070351-protein ID=TCONS_00070351-protein|Name=TCONS_00070351-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
MDKIIDNTSSLVNQYIDVVKQEITKKEQSNQPITLETISEIFEQVGNIFD
GVSTEAQHKSFVKSNLPYVDPQKVELGTRLARKRKHSETTIYNKEETFMY
VPLLDSLKQMLGNHKLAHLLLKKPFQCREGVFYDLFDGSFFKDDPYFSEH
PNALILILYHDELEICNPLGSATGVHKIDMYYYCIANLPLKYRSRHCAVK
LLAIANAALVKKYGIEKILSPIIEDLKKLYHGHEIEFDNGRNLTLYGKVL
VCLGDNPGQNLWGGFKESCGGAYQKCRGCYCDFDSL Run BLAST on NCBI transcript from alignment at scaffold_54:5879..7040 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070351 ID=TCONS_00070351|Name=TCONS_00070351|organism=Clytia hemisphaerica|type=transcript|length=1162bp|location=Sequence derived from alignment at scaffold_54:5879..7040 (Clytia hemisphaerica)
GTAAGGAATCAAAATCACAGTAACATCCTCTACATTTTTGATAAGCTCCC
CCACAGCTTTCTTTAAATCCACCCCATAGATTTTGCCCAGGATTATCACC
AAGGCAGACAAGCACTTTCCCATACAGAGTTAAGTTTCTACCATTATCAA
ACTCTATTTCATGACCATGATAAAGCTTTTTTAGATCTTCAATTATTGGC
GAGAGAATTTTTTCTATGCCATACTTTTTTACCAGCGCTGCATTTGCAAT
AGCCAGAAGTTTCACAGCACAATGACGTGAACGGTATTTTAAAGGAAGAT
TGGCAATACAATAATAGTACATGTCTATTTTATGAACACCAGTAGCGCTT
CCAAGAGGATTGCAGATTTCCAATTCGTCATGATATAAAATGAGAATAAG
GGCATTCGGATGTTCGGAAAAATAAGGGTCATCTTTGAAGAAAGAACCAT
CAAAAAGGTCATAAAACACTCCTTCTCTGCATTGAAATGGCTTTTTAAGA
AGTAAATGTGCTAGTTTGTGGTTTCCAAGCATCTGCTTAAGACTATCTAA
CAAAGGAACATACATGAATGTTTCCTCTTTGTTGTAAATAGTAGTTTCTG
AGTGTTTTCTTTTCCTGGCCAAGCGTGTACCAAGTTCAACTTTTTGTGGA
TCAACATAAGGTAAGTTGCTTTTGACAAACGATTTATGTTGAGCTTCGGT
GGATACACCATCAAATATGTTTCCAACTTGTTCAAAGATTTCTGATATGG
TTTCTAATGTAATTGGTTGATTTGATTGCTCTTTCTTGGTAATTTCCTGT
TTCACAACATCTATGTATTGGTTGACAAGACTGGAGGTGTTATCAATGAT
TTTGTCCATTGTTACCTTTGGTAAGAAAAAGAAGTAACAGTGTCAATAAA
CTTTTTCCTGTTTTAAGAGAAGAGAAATTGTATAGCGTAACCATGGGGTC
CTGGGATTTGGATCTGGTAGAGCATAATGAAAATGaccacagcaaaaatt
tcagtTTCATCAATTCTGAAGATATCGCGATTTGAAAATTAATGGCATGC
ATTTTacacaaatttcaaaatacttATATATCTTGATTGACTTGATATTG
ACACCAAGGGTGGGTACTATgacaaaaatgggtgctgggtatgtgtggac
gataagggtcgg Coding sequence (CDS) from alignment at scaffold_54:5879..7040 >TCONS_00070351 ID=TCONS_00070351|Name=TCONS_00070351|organism=Clytia hemisphaerica|type=CDS|length=858bp|location=Sequence derived from alignment at scaffold_54:5879..7040 (Clytia hemisphaerica)
TAAGGAATCAAAATCACAGTAACATCCTCTACATTTTTGATAAGCTCCCC
CACAGCTTTCTTTAAATCCACCCCATAGATTTTGCCCAGGATTATCACCA
AGGCAGACAAGCACTTTCCCATACAGAGTTAAGTTTCTACCATTATCAAA
CTCTATTTCATGACCATGATAAAGCTTTTTTAGATCTTCAATTATTGGCG
AGAGAATTTTTTCTATGCCATACTTTTTTACCAGCGCTGCATTTGCAATA
GCCAGAAGTTTCACAGCACAATGACGTGAACGGTATTTTAAAGGAAGATT
GGCAATACAATAATAGTACATGTCTATTTTATGAACACCAGTAGCGCTTC
CAAGAGGATTGCAGATTTCCAATTCGTCATGATATAAAATGAGAATAAGG
GCATTCGGATGTTCGGAAAAATAAGGGTCATCTTTGAAGAAAGAACCATC
AAAAAGGTCATAAAACACTCCTTCTCTGCATTGAAATGGCTTTTTAAGAA
GTAAATGTGCTAGTTTGTGGTTTCCAAGCATCTGCTTAAGACTATCTAAC
AAAGGAACATACATGAATGTTTCCTCTTTGTTGTAAATAGTAGTTTCTGA
GTGTTTTCTTTTCCTGGCCAAGCGTGTACCAAGTTCAACTTTTTGTGGAT
CAACATAAGGTAAGTTGCTTTTGACAAACGATTTATGTTGAGCTTCGGTG
GATACACCATCAAATATGTTTCCAACTTGTTCAAAGATTTCTGATATGGT
TTCTAATGTAATTGGTTGATTTGATTGCTCTTTCTTGGTAATTTCCTGTT
TCACAACATCTATGTATTGGTTGACAAGACTGGAGGTGTTATCAATGATT
TTGTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070351-exon-scaffold_54-1491911889:5879..7040 | TCONS_00070351-exon-scaffold_54-1491911889:5879..7040 | Clytia hemisphaerica | exon |
| TCONS_00070351-exon-scaffold_54-1510915933:5879..7040 | TCONS_00070351-exon-scaffold_54-1510915933:5879..7040 | Clytia hemisphaerica | exon |
| TCONS_00070351-exon-scaffold_54-1575043694:5879..7040 | TCONS_00070351-exon-scaffold_54-1575043694:5879..7040 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_54 | supercontig | scaffold_54:5879..7040 . |
Blast
The following BLAST results are available for this feature:
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