TCONS_00070379 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070379
Unique NameTCONS_00070379
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1924

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070379 ID=TCONS_00070379|Name=TCONS_00070379|organism=Clytia hemisphaerica|type=transcript|length=1924bp
TAAATTttggttattggattttttGGTTTTCTCGAAACCAAAAGAGTGGC
TTGTGCATCGCAACATAATCTCAAACTACAACACACTTGGACTTTGTCAA
CTACACAATTAAACTCATATCAAGATGTCTCGCGGTATTACCGATAAGAA
AGTATGTCTCATCGGGGCGGGCCCATGCGGTATCACCCTTCTCTCCGCCT
TCAGTGACGCCAAATCACGTGGTGAAGCTATTCCACAAGTAGTATGTTTC
GAAAAACAAGAACAAATCAGTGGTTTATGGAACTACACATGGCGTACTGG
CCTCACAGCCCATGGTGATGCTTTACCAAACAGTATGTACCGCCATCTCT
GGTCAAACGGACCTAAAGAATGCTTAGAATTTCCAGACTACACTTTCATG
GATCATTTCAAGAAACCAATCCCTTCCTTCCCTCCAAGAGCTGTCCTTCA
AGACTACATTCTCGGAAAAGCCAACAAATACAACGTCGGACAATTCGTCA
AAACAAGTCACGCCGTACGTCACGTCGAAGAAAAAGGTACACAATTCTTG
GTCACTTATGAAGATTTAGTCAACCACCAAACCTATAACGAAGTTTTTGA
TTATGTTGTATGCGCCACCGGTCATTACACCGTGCCACACTTCCCACAAT
ATCCCggattagacaaatttgacgGCCGTGTCATGCACGCGCATGATTTC
CGAAGTGCAgaagaatttaaaaacaaaaccattgTCTTGATTGGATCCAG
TTACTCTGCTGAAGACATTTCATTGCAATTGTACAAATATGGTGCTAAGA
AATGCATCATTTCATACCGTAAGAATCCTATGGGATACAAATGGCCTGCT
GCTATCGTTGAGAAACCAGCCCTTATCAAGGTTGAAGGAAGCAACAAATT
CCATTTCACTGATGGTACAATTGAAgaagttgatgacgtcatcttttgTA
CCGGCTACCAGCATTATTTCCCATTCATGTCACAGAATTTGCGTTTATTC
GCCACCAACATCATGTATCCTGACCATCTCTACAAGGGAATCATGTGGCA
TCGTAATCCAAATTGTTTGTACATGGGAATGTCTGATCAATATTACACTT
ACACAATGTTCGACACACAAGGATTATGGATCCGCGATTACGTCATGGGT
AAGATCAATATCGGAGACGTTGGCAAACGTTCAGAACACATGAAACAATG
GTACGATCGTGGCCAAGCACTCAAGAATGCTGTCGAAGAAATCGAATTCC
AACGTGATTATGTACATGATCTTGTCGCAGACATGCCAAACTACCCAAAG
AAACATGACATCAATATCATTGCTGAACATTTGAAAGTATGGAAAGTGCA
CAAGAGTGAAGATATCTTGACGTACCGAGATCACTCTTTCACCTCACCCA
ATGATGGTCATTTAGCCTGCAAACACGTTCTTCCATGGATCAAGTCCTTT
GATGATTCACTTGAAGGGTATGTCAACCAAACCGAAAAATCACAACCTGC
ATAAAAACCTTTGCCACCAGTTTACAtcaaaacgtcaaaacaacCTTAAA
AGAACGTTGAAACAAGTTTGCGTGTCAACCGGGTTTTTGCGTCTGTACAG
GATCTAGGCTGCTTCGAATATTGATTATCTTGGTATTTATCAATTATGGA
AGTGAGTTTGATAGCTTATTAGTCGGTTTTAGTCCTTTCGGACCTACATG
CGCTTATGTCGGAATTATAATCGCATTGACTTTAAGAATTTAAATTCTTT
ATGACTGTTACCGTACACTTTACATTTTAAAGGGAAACTTTATGTTTGAC
AGGCCCGCTAAGGAAATTGTAAATACTAAATATTATATTATGTATATCAT
GTCATGATATGTTTTTATATCTcaagaaacaattaaaaatgaaaaaaaaa
tcttccagTTGCAACAtaacaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_55:352271..358089+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070379 ID=TCONS_00070379|Name=TCONS_00070379|organism=Clytia hemisphaerica|type=transcript|length=5819bp|location=Sequence derived from alignment at scaffold_55:352271..358089+ (Clytia hemisphaerica)
TAAATTttggttattggattttttGGTGAGGTCAGTGTGatttttgtatt
atttcttTTAGGTTTTTAATCTATTTCATCTTAGTTACAGAGTACAATCG
GCAGACATTGATCCAGTTTGATAATGACCGATGGAGCTCTGTTGAGTTCG
ATTAATTTGAGAACGTCGGTTCAATTGCATAGCATTGTTTCTGACTAACT
ACTTCATGGGTATAGAAAGATTCGCGGGGTAAAAAGTTCATGAAAGTTGG
CGAAATCCTCTTAAAAGAACTTTCACTAAAAGATATTCCTTTTCGATATG
AATTTGATAAAAAGTAGAAGAAGGAGAGAAAGGGAACACTAAAGTTGCGG
TGAAAAAGGCTTTAGATTTTATTTCTTACTTGCTAGAAAGTTTCGCCCAG
AAGGCgctgaaatcaagaaaatttgaaagtccAAAGGTGTTACTGATCGG
AGCAGAATTAATTTGTGATGCCTATGAGAATTTGAATCACCGGGAAGGAA
TCGGACTAACAGTAATTACAATTAttatgatacacgttttttttataaga
acaaactatataagaacataaggcttcgaggcccaaaaatttaagaacat
tctaagaacattctaaggctttgaagacttaaaaacatgcattttcttaa
gaaattacatcaaaatgctaaagaaatgctgaaaataaaaacattataag
aacatttttaggcttcaaatccaaaaaactaagaacatccgaaggctttg
aaaatttttgacgttcttataaaaaaaaaacgtgtaattaatGATAATAA
TAGTAATTATGAAAGAATGTTAACACATCAGTTCGGCAAATTGCACAGAT
CGGCAACACTGCGAAATTCTGCATCTTTAGCGTTGCGATATTCCGCAACG
TTGCGAAATTCCGCAGCTTTACTGCTGCATAATTTCGCAGCTCTGGCCTT
TGGACCAAAATCGGCATCGCAGGGCCTGGACCGGGGTCCcaaaatattga
gaattttgaagaacaacccaaaaggaaacttttcaccCTAGCATTTTTAT
TTCCTACCTAGCGATTATTCACAATCATTCTTGGAAGAAATGCTACTTCG
TTCAAAAAAGCGCTACTTTTTTCAAGAAAGCAAGTTTTTGGCTGATTTTG
CATGTGTTTGGAAGAAAATTGGTAGGcgctcataatttttaaaatcacaa
gCTTCAATTGGAAGCGTTGCGTAAAGTAGCAGCGCAACCCTGGGGAAACG
AGATTAGATTGAAAGAAGTGTTTATCgccagttttttttatttgctacag
aataaaaaaaacacgcTGTTTTCTCTCATCCACGTTTGCAATTTACTGTA
ACAAATGAATCACTATATCTCGGTTAGGAAAGGTTAAAGATCATTTTTTT
AGGCTTTACTAAATTAAACTTAGTCCTCTATCCGCTCGTACGATTTTGAT
ATGTCAATATCATTGATGTAAATCGACGCTCTTTTAATTTATATTGCCCG
TTACTGTAGGATAGAAATTATACAATATTTCATAAAACTATATAACTTTT
TTGACCCCGGTTACGTTGTTATAAAAGATACAATATTATGGAAGGGTCAA
AATTCCGTAAAATTAGAAACGTAGATTTCTGTTTCAGTTGGGGATTGCGA
AATGGCAATTTACTAGTATTGCAAGTAAAACCGGTAAAACCGGTTCAGAA
TTATTTGCAATGTAGAAGGGTGCCTTCGGTTCACTAGTAGTAAAATCTCA
CATCATAACACGGCGACAGTTTGAAGTATCATCGTCAGATCTGGGTTCTA
TTGAAAACTTCCGAACTCTTTTGTCTTGCAAATGAGAATCACTACCAATC
TATTTTTATAAGCGGATGGGTTCATGGTTTcacaaacaacattacattgt
TTAGATTTCCTaatacatatcaaaatttgtaaTATAGATTTGGGGGATTC
CCTTGTACTACACAGATAAATACGAGCTTATATTCCTTTGCTTCTCTACA
CAGGTTTTCTCGAAACCAAAAGAGTGGCTTGTGCATCGCAACATAATCTC
AAACTACAACACACTTGGACTTTGTCAACTACACAATTAGTAAGTTATTT
GTATTTCTTACTATATTATATTACTGTTATTCTCCGTATCTTACACGCGT
CCAAAATTCTTTCTGACGcttatttcttttgttgtgGTGTGGGTGATACA
CAGTTAATAACCACATTCTGTGTCCCTCAGATGTGTATCTGTTTATTATG
ATTTAATATTATTCTTTAAATGCAATGTTTACGCCTCAGTGATATGAAAC
CTTGGTGATCCCAGAAATAGCTCGGACACGTTACAATATTTTCATTGAGT
CACTAAGATTGTTCCTAAATTGAATGTCCCCGGAGTCAGATCAGGTCAGA
TACTGCATTATGAGATCCAAAGTGTCTGTTTTGTATATCCAAGTTGCTAA
TTCAAAGGGGttttaaattgagaaatgcAAGTCCAAGGGGGTCCAGGTCT
TGAGggtcaaaacaataaaatgaacCTCTTCTCTCAACAGGTTCTACAAG
TTTTCTTGTTGAATAGTTTGATCCTAGTTTCTTCTTGAgcatctttgaaa
aaaataatgtttttgggaaattttgcaaaatatttgCCCTCTGAGGGGAA
CTTATATGAGATCTTGTATCAGAATATTGATGATATCATTTTATCTCCAG
AACTCATATCAAGATGTCTCGCGGTATTACCGATAAGAAAGTATGTCTCA
TCGGGGCGGGCCCATGCGGTATCACCCTTCTCTCCGCCTTCAGTGACGCC
AAATCACGTGGTGAAGCTATTCCACAAGTAGTATGTTTCGAAAAACAAGA
ACAAATCAGTGGTTTATGGAACTACACATGGCGTACTGGCCTCACAGCCC
ATGGTGATGCTTTACCAAACAGTATGTACCGCCATCTCTGGTCAAACGGA
CCTAAAGAATGCTTAGAATTTCCAGACTACACTTTCATGGATCATTTCAA
GAAACCAATCCCTTCCTTCCCTCCAAGAGCTGTCCTTCAAGACTACATTC
TCGGAAAAGCCAACAAATACAACGTCGGACAATTCGTCAAAACAAGTCAC
GCCGTACGTCACGTCGAAGAAAAAGGTACACAATTCTTGGTCACTTATGA
AGATTTAGTCAACCACCAAACCTATAACGAAGTTTTTGATTATGTTGTAT
GCGCCACCGGTCATTACACCGTGCCACACTTCCCACAATATCCCggatta
gacaaatttgacgGCCGTGTCATGCACGCGCATGATTTCCGAAGTGCAga
agaatttaaaaacaaaaccattgTCTTGATTGGATCCAGTTACTCTGCTG
AAGACATTTCATTGCAATTGTACAAATATGGTGCTAAGAAATGCATCATT
TCATACCGTAAGAATCCTATGGGATACAAATGGCCTGCTGCTATCGTTGA
GAAACCAGCCCTTATCAAGGTAAAGGAATTTTCTAAGTTGACCTTCTCTT
CCATATAATCTTCCTTAGATAAAAATAATTAGTTAGTTATACAATATTGC
CTATGTACTGACACGACTTTATTGTCTGGTATCAGCTCCGACCTAAAAGA
AATGCCTTAAATTACGCTTTGATTTTATGGCTATGCATTGTAGGTTAGTT
TTACCTCTAAGCAGACAAAGCTCTCTAacaacaaaatgttttgaatcCTT
TTGACAAATACGATAAAGCTATTAAAAAATCATGATGCTCTAGGACCTCT
AGCTATAGATTAAAAAGTAGTTACGAAATTTATATAATCATTAACATTTT
CCTCTTTCTTCAAATATTGTAGGTTGAAGGAAGCAACAAATTCCATTTCA
CTGATGGTACAATTGAAgaagttgatgacgtcatcttttgTACCGGCTAC
CAGCATTATTTCCCATTCATGTCACAGAATTTGCGTTTATTCGCCACCAA
CATCATGTATCCTGACCATCTCTACAAGGGAATCATGTGGCATCGTAATC
CAAATTGTTTGTACATGGGAATGTCTGATCAATATTACACTTACACAATG
TTCGACACACAAGGTTAGCGAGAATTTCGACCCCAGCTGCCACACAACGT
GGGTTGTTCCAACGTTTATccaatgttcataacgtccatttaacgttaga
tgaacgttgaaacgacgttgtgtgtcagctgggacgGTTACCAATACCAT
TAagagttcttccgtctcagacggattttcgtctcaGTGAAAGTATATAA
AGAATTTTCCTTCTCCAAATctctgcataattcaccaaaatttcaaaaat
atgtgCTCATTTCCtttgtaaaatccattttccactGTCTTATGTAGATA
ACGAAAGCCATTACGTAGCGTCAGCTCGTCTTGACTGACAGCTTGAAATA
CTATACTATTGTTTTAAGGAGAATTGAGACTGACATCCCGACTTCTTCAA
ATATTTGCTTgataaaaaatctacaaaatcaaCCCCAATGCATCCAAATT
ATATCCACCTGTAAGCCGCTATCAGTTTGCGATTTGATTAATTAGCAAAT
CTAATAATCCCACATAATTCATATTTATCTTACTTTTTTTCCTAAAGGAT
TATGGATCCGCGATTACGTCATGGGTAAGATCAATATCGGAGACGTTGGC
AAACGTTCAGAACACATGAAACAATGGTACGATCGTGGCCAAGCACTCAA
GAATGCTGTCGAAGAAATCGAATTCCAACGTGATTATGTACATGATCTTG
TCGCAGTAAGTCTTCCATaacttttcattgaaaaataactaGTTACTTGt
tactagtttgagtaaagaaaacgatttaagttaatttcatactgtcaaag
tttcatgccatccaggatggcaatcttcagtgaaatcttAGTTACTTGTT
CCTCCATGTATGTATGTAAACGAGTTGAAGTAAGAGGAAAGAAAAATCAT
GTGAGTAGGTAGTTGGTTAGTATTTTCATAGCCATACACTTAGAAACCCT
TAAAAGACAATTTCTCATCCTAAAGGACTTTCAAACCTGGCACTGAATAC
AGGGCTCTTAACATTTGGAACGGTTCCTTAANAGCGAAACGAAACCGTCA
CGTGAGAACATGGTCTTAACATTTGGAACGATTCCTTCTATTTTTCTTAA
TTATCGTCTTTTTCGTCTCTCCAGGACATGCCAAACTACCCAAAGAAACA
TGACATCAATATCATTGCTGAACATTTGAAAGTATGGAAAGTGCACAAGA
GTGAAGATATCTTGACGTACCGAGATCACTCTTTCACCTCACCCAATGAT
GGTCATTTAGCCTGCAAACACGTTCTTCCATGGATCAAGTCCTTTGATGA
TTCACTTGAAGGGTATGTCAACCAAACCGAAAAATCACAACCTGCATAAA
AACCTTTGCCACCAGTTTACAtcaaaacgtcaaaacaacCTTAAAAGAAC
GTTGAAACAAGTTTGCGTGTCAACCGGGTTTTTGCGTCTGTACAGGATCT
AGGCTGCTTCGAATATTGATTATCTTGGTATTTATCAATTATGGAAGTGA
GTTTGATAGCTTATTAGTCGGTTTTAGTCCTTTCGGACCTACATGCGCTT
ATGTCGGAATTATAATCGCATTGACTTTAAGAATTTAAATTCTTTATGAC
TGTTACCGTACACTTTACATTTTAAAGGGAAACTTTATGTTTGACAGGCC
CGCTAAGGAAATTGTAAATACTAAATATTATATTATGTATATCATGTCAT
GATATGTTTTTATATCTcaagaaacaattaaaaatgaaaaaaaaatcttc
cagTTGCAACAtaacaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043836XLOC_043836Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070379-exon-scaffold_55-1491911889:352271..352295TCONS_00070379-exon-scaffold_55-1491911889:352271..352295Clytia hemisphaericaexon
TCONS_00070379-exon-scaffold_55-1510915933:352271..352295TCONS_00070379-exon-scaffold_55-1510915933:352271..352295Clytia hemisphaericaexon
TCONS_00070379-exon-scaffold_55-1575043694:352271..352295TCONS_00070379-exon-scaffold_55-1575043694:352271..352295Clytia hemisphaericaexon
TCONS_00070379-exon-scaffold_55-1491911889:354274..354359TCONS_00070379-exon-scaffold_55-1491911889:354274..354359Clytia hemisphaericaexon
TCONS_00070379-exon-scaffold_55-1510915933:354274..354359TCONS_00070379-exon-scaffold_55-1510915933:354274..354359Clytia hemisphaericaexon
TCONS_00070379-exon-scaffold_55-1575043694:354274..354359TCONS_00070379-exon-scaffold_55-1575043694:354274..354359Clytia hemisphaericaexon
TCONS_00070379-exon-scaffold_55-1491911889:354971..355739TCONS_00070379-exon-scaffold_55-1491911889:354971..355739Clytia hemisphaericaexon
TCONS_00070379-exon-scaffold_55-1510915933:354971..355739TCONS_00070379-exon-scaffold_55-1510915933:354971..355739Clytia hemisphaericaexon
TCONS_00070379-exon-scaffold_55-1575043694:354971..355739TCONS_00070379-exon-scaffold_55-1575043694:354971..355739Clytia hemisphaericaexon
TCONS_00070379-exon-scaffold_55-1491911889:356093..356333TCONS_00070379-exon-scaffold_55-1491911889:356093..356333Clytia hemisphaericaexon
TCONS_00070379-exon-scaffold_55-1510915933:356093..356333TCONS_00070379-exon-scaffold_55-1510915933:356093..356333Clytia hemisphaericaexon
TCONS_00070379-exon-scaffold_55-1575043694:356093..356333TCONS_00070379-exon-scaffold_55-1575043694:356093..356333Clytia hemisphaericaexon
TCONS_00070379-exon-scaffold_55-1491911889:356868..357025TCONS_00070379-exon-scaffold_55-1491911889:356868..357025Clytia hemisphaericaexon
TCONS_00070379-exon-scaffold_55-1510915933:356868..357025TCONS_00070379-exon-scaffold_55-1510915933:356868..357025Clytia hemisphaericaexon
TCONS_00070379-exon-scaffold_55-1575043694:356868..357025TCONS_00070379-exon-scaffold_55-1575043694:356868..357025Clytia hemisphaericaexon
TCONS_00070379-exon-scaffold_55-1491911889:357445..358089TCONS_00070379-exon-scaffold_55-1491911889:357445..358089Clytia hemisphaericaexon
TCONS_00070379-exon-scaffold_55-1510915933:357445..358089TCONS_00070379-exon-scaffold_55-1510915933:357445..358089Clytia hemisphaericaexon
TCONS_00070379-exon-scaffold_55-1575043694:357445..358089TCONS_00070379-exon-scaffold_55-1575043694:357445..358089Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:352271..358089 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.55359	4.24561	0.37528	0.000173549	0.0558005	0.000982122	0.666618	0.524458	1.97533	4.04775	3.64946	10.5516	35.1086	5.89809	29.8469	44.8583	59.6311	140.45	137.783	404.604	174.604	200.842	143.599	219.202	10.1848	0.0179121	2.32407	47.6358	244.559	77.8774
Blast
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BLAST of TCONS_00070379 vs. Swiss-Prot (Human)
Match: FMO6 (Putative dimethylaniline monooxygenase [N-oxide-forming] 6 OS=Homo sapiens GN=FMO6P PE=5 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.092e-23
Identity = 70/231 (30.30%), Postives = 126/231 (54.55%), Query Frame = 2 
Query:  146 KKVCLIGAGPCGITLLSAFSDAKSRGEAIPQVVCFEKQEQISGLWNYTWRTGLTAHGDALPNSMYRHLWSNGPKECLEFPDYTFMDHFKKPIPSFPPRAVLQDYILGKANKYNVGQFVKTSHAVRHVEEKGTQFLVTYEDLV----NHQTYNEVFDYVVCATGHYTVPHFP--QYPGLDKFDGRVMHAHDFRSAEEFKNKTIVLIGSSYSAEDISLQLYKYGAKKCIISYR 820
            K+V +IGAG  G   L+A       G    +  CFE+ + + GLW ++       H +    S+Y+ +++N  KE + FPD+ + D +    P++   + LQ+YI   A K ++ ++++    V  ++ K   FLVT + +V    + +  + +FD V+  +GH+  P+ P   +PGLD+F G  +H+ D+++ E FK K +++IG   S  DI+++L +  A + IIS R
Sbjct:    3 KRVGIIGAGVSG---LAAIWCCLEEGL---EPTCFERSDDVGGLWKFS------DHTEEGRASIYQSVFTNSSKEMMCFPDFPYPDDY----PNYIHHSKLQEYIKTYAQKKDLLRYIQFETLVSGIK-KCPSFLVTGQWVVVTEKDGKQESTIFDAVMICSGHHVYPNLPTDSFPGLDQFRGNYLHSRDYKNPEAFKGKRVLVIGLGNSGSDIAVELSRL-ATQVIISTR 215
The following BLAST results are available for this feature:
BLAST of TCONS_00070379 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FMO61.092e-2330.30Putative dimethylaniline monooxygenase [N-oxide-fo... [more]
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