TCONS_00070391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070391
Unique NameTCONS_00070391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070391 ID=TCONS_00070391|Name=TCONS_00070391|organism=Clytia hemisphaerica|type=transcript|length=1407bp
TCCATGTCCACCGCCCTGCCCACCACCACCAATCCCTCCTCCACCGATGG
AAACGACCGAAGTTGAAACTCAGAGTGAAACCACAACAGAAACAGGGACA
GGTACAAAGACAGCAACCGGAGCTGGAGCAGCCAGTGCTGGAAGTGCCGG
TGCTTCATCAGATTCTGAATCTGAAGCTGACACCAAATCTAAAGGTGAAA
GTTCCGGTGATACAAGGGCTGAAGGAGGAGCCAAAGGACAAGGACAAGGC
TCTAGTGAAGGTAAAGGTGGAAGCGACTCAGATGCAGGAGCAGTTTCAAA
ATCAGGTGCCGGCTCTGAATCGAATGCCAAATCCACTGATGGAAAGAAAG
ATAAGAAAGAAGGTGGTGGCGGAGGTGGAGGTGGAGAGAGTGGCTCCAAC
GCCGGTGCACAGAGCGGCTCTAACACTGAAACTGATACTAACAGTGTGGC
TGCACTTGGAGTACGTGGCAATATTGATGCTAAGCAAAATATTGGAATAG
GAAGTCAATCGTCGACGGGAACTGGAACGAGTACGGGAGCAGGCAGCGAA
TCAGAGTCGACCTCAAGTGCAGGTGGAGGAACTGGATCGGGTGTTTCTAT
TGGtagcaaacaaaacaaaaaagatgaaaCAGTTCATGATAAACAGAGCA
AAAATGCCGTGACcgacaacaaacaacaaaagaaacaaacaatGGGTAAT
GGTCGGAAAGTCAATGTTGATGAAACCCAATCGAATACGAAAACAACGAA
AACGTATAACGAGCACGAACAAATTACGACGACGCAAACGAATACCGACT
CTTCTATGGGATCGGGAAAGAAAAATGTCACCAATCAAGAAAATAAgaag
aatgaaaagaaaaatgcaaacaaaCGTGATCAAACTGAAAGaaCGAACGG
TATTTTACCAAGTAGTTGTATTGGAATTCTAAACGCCAATCCCAATGCAC
GAAGtggaaaatataaaatatcaacGGGTAAAGACACCACTCAGATAAAT
TGTGATTTCAGTCACCATTCGACTCAACCTTACAAGAAAGTCGCAAGTAT
TGACAAACGACAGAAAACTTCATCGTCCTAAAATTTGTGTGTCCGTAAAA
CTTATTTTGTAGAGTAGATTTTTTATACTTTAGTACATATTTatttgtaa
tttaactgaattgaccttaaatttgattaaaatttgaccagaaagtaaaa
taaaaacttttatgAACTGAATTCTTTTTTCCATATTGTCTTGACTAAAA
AATAGTTCGTAGAGTACAtcgaaatttaagtttatcgAATATATACATCA
TACGAAAATTTCTTTTCGGTATCTAATTCTTTTAAATTAATATAATCATA
TTAGTTCTACACTAAAAAGTGTATACATAGCAATATGAAGTTGggaataa
acttttg
Run BLAST on NCBI

transcript from alignment at scaffold_55:137599..142990-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070391 ID=TCONS_00070391|Name=TCONS_00070391|organism=Clytia hemisphaerica|type=transcript|length=5392bp|location=Sequence derived from alignment at scaffold_55:137599..142990- (Clytia hemisphaerica)
TCCATGTCCACCGCCCTGCCCACCACCACCAATCCCTCCTCCACCGATGG
AAACGACCGAAGTTGAAACTCAGGTAAGATGATTTATTCAGTCATGCATG
CTTTCAAAAACATTTTTTCCATGTGACAACACTTACACAATTTTGACATA
ACCGAAACATCTTTTAAATCTCTTATCTGGAGACACGAGCATACAAGACT
AATACGGGGTCCGCAAAGAACAGCGAGATTGAAATACCTTAATACAGTGG
AGTCTCTGTAACTGAGGTTTATAGGGCAGTGTTAACCGAAGGGACGAAAT
TATTTGTTCGAGTTATGGAGACATTCGAGTTATAGAATTTCGAGTTAAAG
AAACTCCACTCTATCTTATTATGACTTTAGAATCAATTTGCTATTCTTTC
TATCCTTTTTTTACTATAGCCACCAAAATGTAAAGGAAACTCTGAAGCAA
CTATAAAGACAGGCAAACAAGCCAAAGACGGATGTTAACGTTAGACTCAT
GACATATACATTGACAGACTGACTGACAAATAACAAAGACGTTTAAAGTC
GTTACCTTCTAGCTTCTACGAAGCGACTCAAACAAAGGTTTTAATCAAAA
CAAAAGCACCCTGTACTGACGCCTTGGCCAACATTCTACCTCATGTTTGT
GTGTTTTCTTACATTTCTGTAGGAGAAAGAAAAGGAGATCCCAGTTCTGA
ATAACGATCCGTGTTGTTAGATTCTTCACTTTTAAGATGAATGAATGAAT
GAATGAATGAAATGAGATTGAAAATGACTGAAAGAAACGACTCTCCAAGC
TGCATTGATCTGGATTGTGATTTTCAGCATTTTTTTCCTTTATGCTTTTG
TAAATTTAACAAAACTATTATTCAATTTGTTCGATTGAGCTTGAGTCTTT
TCTTTCACTCACTTTCGCTTTTCATTCCTCGATTACAATGTCTTAAATGC
ATGCATCCTCCATTTTTGTATTGAAAAAAATCATCTAAAGCATGAAGTGA
AGATTTAGTGAGAGAATCGAGTCAAGCTTTTTAGAATCATTTCAAGAATC
AAAGAGCAATATTACACCCCTGTCTCGCATCCCCGGTGGAACTTTTTTTC
TCAGTAGGGATAAAAATTCCTATTGAAATCCCAATGGGGATAGAAATTCC
TTTGTTCCAAGGTTAGGAAGTGAATTTTTTTAAACATTGAATTTCGAATG
GGAATTTTTGTCAATCTTTCAAGTGAGTTCAACTGGGTTCCCAGCGGGTC
TGTGACACAGGGGTGTAAAATACTTTTTTTAGATAAAAACACTAGATTTC
ATGTTTTGTTTATATTAAAAATCTACATTTCATGATTTGAAATCTGCTCT
TTATTTCTTGAAAAGATCTTTTAGTTCAAGTAATGATCATTATTTTAATT
TAATTGCATTAACATTTTTGTAGATATTTATTGTGAATTTTAAGAATAAA
TTCTTGTAAAATCAATTTAAAATTTATCCAAGTTACCATCCACCTAAAAT
TTCTAAAGTCTCTTTCTGCCTGTAATTTGAATAGCTCAGTTTTGCAATGT
TCATCAACCATATCTTTTATATTCGCGGTGTAATCTTTGATACTGAAACA
TACTGGAAAGGGATTTACTACCAACTCTAAAGTTTAAAAAACAAAGTTTC
TTTCTCAACTTGTGTAACTCTAAAATCAGAAAACACAAGTGAAACAATCT
CGTTTGATATCTTGTCCTTTACCTTGCCAGGTCTAACTAAAGATATGTCA
AATAATGTACCAAATCCATGAAATATTATAAACTTTGATATTCTTTTGAA
TTTAGAGTGAAACCACAACAGAAACAGGGACAGGTACAAAGACAGCAACC
GGAGCTGGAGCAGCCAGTGCTGGAAGTGCCGGTGCTTCATCAGATTCTGA
ATCTGAAGCTGACACCAAATCTAAAGGTGAAAGTTCCGGTGATACAAGGG
GTAAGTAGATTTCAAAGCATGAAAAATAACAGCTTTTTTAAATCATCAAT
TTATATTTCACTTCCAACCACTAGATTTGAACTGAAAGATTAGATATCAT
TCTTTGTTGTTAACCAGTTACTTTTTCGAAGCGGGCTACACGGCTTTTGC
GAAATGCAATTGGTTCTTTTCGCATGACGACGGGCTTTCACTGCACGGAG
CTGCCTGCCGTTAGGAAAACTCATTGTGACGTCAGTTTTTCCAAAGAAAA
ATGAACACTGGGTTATTTCTCAGTACAGCCCTCACAAACCGGTCATTATT
GTATTAATGTTGTATTTCAAAAGTAGGGCTATTATTTTTGGAACATGATG
TCTAATCCATCCCATACAACACTACAAGTCTTAACTTTTCACTTACATAA
TCAATTCTTTACCACAGCTGAAGGAGGAGCCAAAGGACAAGGACAAGGCT
CTAGTGAAGGTAACACATTCATTTGTTATATCAGCTTTTTTAATTAATGA
GTCTAAAAGATTCTCTCAATGTTTGATCGTATGATAAGAAATTTTGCGAA
TATCGTGGCGTCTAAACGCCAACAAAATAGTTGAAAAATTATTTTAAATT
CAACACTTATCCATAATACTTGGAACTTGTGTGTTCGGTGTTGAAATCTG
AAATCTCTACTATTTGATGTTCAGGTAAAGGTGGAAGCGACTCAGATGCA
GGAGCAGTTTCAAAATCAGGTGCCGGCTCTGAATCGAATGCCAAATCCAC
TGATGGAAAGAAAGATAAGAAAGAAGGTGGTGGCGGAGGTGGAGGTGGAG
AGAGTGGCTCCAACGCCGGTGCACAGAGCGGCTCTAACACTGAAACTGAT
ACTAACAGTGTGGCTGCACTTGGAGTACGTGGCAATATTGATGCTAAGCA
AAATATTGGAATAGGAAGTCAATCGTCGACGGGAACTGGAACGAGTACGG
GAGCAGGCAGCGAATCAGAGTCGACCTCAAGTGCAGGTGGAGGAACTGGA
TCGGGTGTTTCTATTGGTAGCAAACAAAACAAAAAAGATGAAACAGTTCA
TGATAAACAGAGCAAAAATGCCGTGACCGACAACAAACAACAAAAGAAAC
AAACAATGGGTAATGGTCGGAAAGTCAATGTTGATGAAACCCAATCGAAT
ACGAAAACAACGAAAACGTATAACGAGCACGAACAAATTACGACGACGCA
AACGAATACCGACTCTTCTATGGGATCGGGAAAGAAAAATGTCACCAATC
AAGAAAATAAGAAGAATGAAAAGAAAAATGCAAACAAACGTGATCAAACT
GAAAGGTATGTGATCCTCATTGTGTTCTCATTCAGTTGAGAGAAAATTTT
CACTTGTCTTTTAAAGAATTCATCGTCGCACTTCAATCTTAGAATAGTTC
TTTCTACTGGAGCACTATAAAATAAGAGTGATTTTAATGTCATTCATTAT
CGTGAACAGGTTTTCATTCGAAGCCTGTTTCTATCTCAAGGATAAAATGA
TGCAGCTAAATACCAAAAGGGGTGGGAAGAAGAATAAAAAATTCAGGGTA
TTTAGAATTTACCTTAAAGGAAGAAATTTTTGCGGGAATTTAATTTGGCG
CATGGCCGCAAAACTTTTTTCAGAGGGAATTTAACTTGGCGAATGACTGG
AAAAATAAAATTTGAGGGTAATTTAATTTAGTGGATGCAGGATAATTTTT
ACCAAAATCGTTATCAATTAAGTAAAAAAAAAACAGTTTTAAGGCCTAAA
ATAGCACCAATTTGGGAATGCGTTAAATAAAATAAATTTGGCGGGAATCT
GATTTGGCGGATGGAGGAAAAAATAAATTTTGGCGGGTACTTAATTCTTA
GTGGATTTTGGATTTCCACCAAATCCGCCAAATTTTTCACCAGGGTTCAT
TCTTTAGTCGATTTTTTTGGGCCAGGTTCCCTATGGACTGTGATATTCAA
TAGATAAAAAACACAAATTAGTACATTGATTTCTTAAAACTTTTCCAAAG
CATCGAAACGACACTTAATCGTATATAAATGGTCAAATATTTGCATATAA
AAAAACACTTCTTGAGTTGAAAGGGTCTTGAATTAAGATTGGGATACGAG
AAAGTGGTGATTCTTTCTCGTTGAATTTATATTTTCCAGGTAGTGCTTCT
CCCTTTTTTCTTTTTCATAGAACGAACGGTATTTTACCAAGTAGTTGTAT
TGGAATTCTAAACGCCAATCCCAATGCACGAAGTGGAAAATATAAAATAT
CAACGGGTAAAGACACCACTCAGGTTAGGATTCTTTTTTCTGTTTACCCA
TTATGAAATCTCCGGGGATGTACATTTTTAGAATATCCTTATGTATGAGA
AAAGCTTTAATGGGAGCACTTATGACGATGTTTCCAACGCAACTACCAAA
AGAGAAATGAAATTTATATGGCACTAATTGCTCTGCAAGTAGAACAAGTT
TATTTCCTACCATGTTTTTTTAGCCTTTAAGTGTATATTGGAGTGGATAC
AAAATTATTAGAAATCCTATGAGGAGAAAACATCACAATATAGTTTAATT
CTATTGAAACTGAAAACCAGCAAGTACTTATTGGTTTGCTAGTGTCTAAA
TTTCTCATTTTTCCGCAAAACTTAATGCACTATAGTATAAGGGTCGATGA
AAAGGGTTTAAGTATGATTGATAAACTTTTACATCGAAAGCATTTCAGTT
ACATTAAAGGAAGAAATTTCGGCGGGGATTTAATTTGGCGGATGGTCGAA
ATAGTTTTCTCAGAGGGAATTTAAATTTAAAATTAAATTTGGCAGACGAG
GGACATTTTTGTCCAAAAAAGGCCATTTAAAAAGGAAAAGCCTGTTTTAA
AGCCTGAAATAGCACACATTTGGGGGAATAAATAGAGCAACTTAAATTTG
GTGGGAATTTAATTTGGCGGATGAGGGAAAAATTAAATTTGGCGGGAACT
TTGGCGGGAAGATTTTCTTCCATCCAAAATTCTTTCCTTTTAATGTAGGT
TTTACCTCACTGTTATTGTTCTTTTTCAGATAAATTGTGATTTCAGTCAC
CATTCGACTCAACCTTACAAGAAAGTCGCAAGTATTGACAAACGACAGAA
AACTTCATCGTCCTAAAATTTGTGTGTCCGTAAAACTTATTTTGTAGAGT
AGATTTTTTATACTTTAGTACATATTTATTTGTAATTTAACTGAATTGAC
CTTAAATTTGATTAAAATTTGACCAGAAAGTAAAATAAAAACTTTTATGA
ACTGAATTCTTTTTTCCATATTGTCTTGACTAAAAAATAGTTCGTAGAGT
ACATCGAAATTTAAGTTTATCGAATATATACATCATACGAAAATTTCTTT
TCGGTATCTAATTCTTTTAAATTAATATAATCATATTAGTTCTACACTAA
AAAGTGTATACATAGCAATATGAAGTTGGGAATAAACTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043842XLOC_043842Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070391-exon-scaffold_55-1575043694:142918..142990TCONS_00070391-exon-scaffold_55-1575043694:142918..142990Clytia hemisphaericaexon
TCONS_00070391-exon-scaffold_55-1575043694:141041..141185TCONS_00070391-exon-scaffold_55-1575043694:141041..141185Clytia hemisphaericaexon
TCONS_00070391-exon-scaffold_55-1575043694:140582..140623TCONS_00070391-exon-scaffold_55-1575043694:140582..140623Clytia hemisphaericaexon
TCONS_00070391-exon-scaffold_55-1575043694:139736..140366TCONS_00070391-exon-scaffold_55-1575043694:139736..140366Clytia hemisphaericaexon
TCONS_00070391-exon-scaffold_55-1575043694:138768..138870TCONS_00070391-exon-scaffold_55-1575043694:138768..138870Clytia hemisphaericaexon
TCONS_00070391-exon-scaffold_55-1575043694:137599..138011TCONS_00070391-exon-scaffold_55-1575043694:137599..138011Clytia hemisphaericaexon
TCONS_00070391-exon-scaffold_55-1510915933:142918..142990TCONS_00070391-exon-scaffold_55-1510915933:142918..142990Clytia hemisphaericaexon
TCONS_00070391-exon-scaffold_55-1510915933:141041..141185TCONS_00070391-exon-scaffold_55-1510915933:141041..141185Clytia hemisphaericaexon
TCONS_00070391-exon-scaffold_55-1510915933:140582..140623TCONS_00070391-exon-scaffold_55-1510915933:140582..140623Clytia hemisphaericaexon
TCONS_00070391-exon-scaffold_55-1510915933:139736..140366TCONS_00070391-exon-scaffold_55-1510915933:139736..140366Clytia hemisphaericaexon
TCONS_00070391-exon-scaffold_55-1510915933:138768..138870TCONS_00070391-exon-scaffold_55-1510915933:138768..138870Clytia hemisphaericaexon
TCONS_00070391-exon-scaffold_55-1510915933:137599..138011TCONS_00070391-exon-scaffold_55-1510915933:137599..138011Clytia hemisphaericaexon
TCONS_00070391-exon-scaffold_55-1491911889:142918..142990TCONS_00070391-exon-scaffold_55-1491911889:142918..142990Clytia hemisphaericaexon
TCONS_00070391-exon-scaffold_55-1491911889:141041..141185TCONS_00070391-exon-scaffold_55-1491911889:141041..141185Clytia hemisphaericaexon
TCONS_00070391-exon-scaffold_55-1491911889:140582..140623TCONS_00070391-exon-scaffold_55-1491911889:140582..140623Clytia hemisphaericaexon
TCONS_00070391-exon-scaffold_55-1491911889:139736..140366TCONS_00070391-exon-scaffold_55-1491911889:139736..140366Clytia hemisphaericaexon
TCONS_00070391-exon-scaffold_55-1491911889:138768..138870TCONS_00070391-exon-scaffold_55-1491911889:138768..138870Clytia hemisphaericaexon
TCONS_00070391-exon-scaffold_55-1491911889:137599..138011TCONS_00070391-exon-scaffold_55-1491911889:137599..138011Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:137599..142990 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.161134	0.37542	0.167653	0.164023	0	0.74105	6.61429	7.60691	1.18921	0.455861	3.6616	2.93581	3.25066	1.73645	2.16981	7.77945	5.03578	6.87414	0.250036	0.16471	3.43729	3.36216	7.11141	5.1192	3.55674	4.03805	1.23074	1.25322	0.0629915	0.200932
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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