TCONS_00070393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070393
Unique NameTCONS_00070393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2665

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070393 ID=TCONS_00070393|Name=TCONS_00070393|organism=Clytia hemisphaerica|type=transcript|length=2665bp
AAATCACTGAGGCGTGAACAATTCGAAGGGATCGAACAAAAGTGTTTTGT
TGAGAAatctaagaaaaaataaaaaaaataaattttttttgtgacatttt
gttttatttatatgtatttttttgtttatattttttgatgggCATTTAGT
TTAGGTTTTTTGATCATTCTCCAGTCCAACAATGCGGACAATACATATCA
TCCTATTATCTATCGTCATTCTCGCATCTTCATTGCAAGCTAAACGTTTC
ACAGATGTCGAGAAAAAATTAAACgctattaaaaatcatcaactctCTGT
TGAAAAATGGAAGAAATTATATTCATTAAAACCAGTAGCTGAAAAACCTC
AGAAACCAGTGAAACCGCCAACAGCTACGGTAACTCAAACTGAAGAGAAA
GTATCAAGCGCTGTTACCAACAAAAAGCCACAGCTTCAACAACAGCAAAA
GCCATTGAAACCTTCACCACCCAAACAACCATATCAACCAAAACCAGCTC
CAACGATCGAGAAAGATCCTaacgaagaaaaacaaaagaaagaaagttAC
AAAAATAAAGGTAAACCTGGTCCAGAGGTTGTATGGCGAGTCGAGTCACA
CCCTGGAGAAGATGCCAAAGTTCCAAGCACATTCCAAAACGGTGTAGGAC
AACCATCTACCACAAATAACCAGACTCCAGGTACTCAAGGAACTGGAGAT
ATCCAACAAACTGACTTACCAGCTGCTGTTGGAAAACATGGTAAAAAACC
ATCCAAGTTaggaaagaaaaaaggaaaaggacATCGACATCATCATCATA
GGAAACATGCTGTAACTGGTACCAAAAAAGAGGACGTTGCAATCAAAGCT
GCCTCTTCAGCTGAAGTAAACTTGGATGGTAAAGACAAGGACTGTCCACC
TCCTCCACCACCATGTCCACCTCCACCCCCACCCCCTCCATGTCCACCAC
CACCTCCACCTCCTCCTCCACCGCCTCCACCACCGCCATGTCCACCGCCC
TGCCCACCTCCACCATGTCCTCCACCTCCACCTTGCCCACCACCATGTCC
ACCTCCACCCCCACCCCCTCCATGTCCACCACCACCTCCACCTCCTCCTC
CACCGCCTCCACCACCGCCATGTCCACCGCCCTGCCCACCTCCACCATGT
CCTCCACCTCCACCTTGCCCACCACCATGTCCACCTCCACCCCCACCCCC
TCCATGTCCACCACCACCTCCACCTCCTCCTCCACCGCCTCCACCACCGC
CATGTCCACCGCCCTGCCCACCTCCACCATGTCCTCCACCTCCACCTTGC
CCACCACCATGTCCACCTCCACCCCCACCCCCTCCATGTCCACCACCACC
TCCACCTCCTCCTCCACCGCCTCCACCACCGCCATGTCCACCGCCCTGCC
CACCTCCACCATGTCCTCCACCTCCACCTTGCCCACCACCATGTCCACCT
CCACCCCCACCCCCTCCATGTCCACCACCACCTCCACCTCCTCCTCCACC
GCCTCCACCACCGCCATGTCCACCGCCCTGCCCACCTCCACCATGTCCTC
CACCTCCACCTTGCCCACCACCATGTCCACCTCCACCCCCACCCCCTCCA
TGTCCACCACCACCtccacctccaccaccaccTCCATGTCCACCGCCCTG
CCCACCACCACCAATCCCTCCTCCACCGATGGAAACGACCGAAGTTGAAA
CTCAGCCACCAAAATGTAAAGGAAACTCTGAAGCAACTATAAAGACAGGC
AAACAAGCCAAAGACGGATGTTAACGTTAGACTCATGACATATACATTGA
CAGACTGACTGACAAATAACAAAGACGTTTAAAGTCGTTACCTTCTAGCT
TCTACGAAGCGACTCAAACAAAGgttttaatcaaaacaaaagcacCCTGT
ACTGACGCCTTGGCCAACATTCTACCTCATGTTTGTGTGTTTTCTTACAT
TTCTGTAGGAGAAAGAAAAGGAGATCCCAGTTCTGAATAACGATCCGTGT
TGTTAGATTCTTCACTTTTaagatgaatgaatgaatgaatgaatgaaatg
agattgaaaatgactgaaagaaaCGACTCTCCAAGCTGCATTGATCTGGA
TTgtgattttcagcatttttttccTTTATGCTTTTGTAAATTTAACAAAA
CTATTATTCAATTTGTTCGATTGAGCTTGAGTCTTTTCTTTCACTCACTT
TCGCTTTTCATTCCTCGATTACAATGTCTTAAATGCATGCATCCTCCAtt
tttgtattgaaaaaaatcatctaAAGCATGAAGTGAAGATTTAGTGAGAG
AATCGAGTCAAGCTTTTTAGAATCATTTCAAGAATCAAAGAGCaatatta
cacccctgtctcgcatccccggtggaactttttttctcagtagggataaa
aattcctattgaaatcccaatggggatagaaattcctttgttccaaggtt
aggaagtgaatttttttaaacattgaatttcgaatgggaatttttgtcaa
tctttcaAGTGAGTTCAACTGGgttcccagcgggtctgtgacacaggggt
gtaaaatactttttttagataaaaacactagatttcatgttttgtttata
ttaaAAATCTACATTTCATGATTTGAAATCTGCTCTTTATTTCTTGAAAA
GATCTTTTAGTTCAA
Run BLAST on NCBI

transcript from alignment at scaffold_55:141612..146153-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070393 ID=TCONS_00070393|Name=TCONS_00070393|organism=Clytia hemisphaerica|type=transcript|length=4542bp|location=Sequence derived from alignment at scaffold_55:141612..146153- (Clytia hemisphaerica)
AAATCACTGAGGCGTGAACAATTCGAAGGGATCGAACAAAAGTGTTTTGT
TGAGAAATCTAAGAAAAAATAAAAAAAATAAATTTTTTTTGTGACATTTT
GTTTTATTTATATGTATTTTTTTGTTTATATTTTTTGATGGGCATTTAGT
TTAGGTTTTTTGGTAAGTGCACCCTTTAGAATTTTTTTCATTTTGTTTTT
GTTCTATTTGAAATAGTTCTACATTAGGTCAGGGCCAAATCAGAACCATT
ACTGTAATGGGTTTGGGATGACCTAGGATATCTTTTTTTTTCTGGCGTAT
ACACCTTTTTTTTTATAAGAACGTCAAAAATTTTCGAAGCCTTCGGATGT
TCTTAGTTTTTTGGATTTGAAGCCTAAAAATGTTCTTAAAATGTTCTTAT
TTTCAGCATTTTTTTAGCATTTTGATGTAATTTCTTAAGAAAATGCACGT
TTTTAAGTCTCCAAAGTCTTAAGGGCTACTTAGACTACACAATATATTGA
CGAACAATATTCGACAATATGGTTTGCGGACCGTAATGTACGAAGTAAAC
AACTGGTACTCTATTATAAAAAGGAATTTTCTTTCTGTAAACAATCCCCC
TTTATTGTTGGAATATTGCAAATCCAGCTGACAATATATTGCGGACACCT
TTTCAATATATTGTGGACATTCAGCAATATATCATCAATATATTGCCTGA
CAATATATTGTGTAGTGTATGTAGCCCTTTAGAATGTTCTTAAATTTTTG
GGCCTCGAAGCCTTATGTTCTTATATAGTTTGTTCTACGTGTAATTGTAC
ATCCTAAATTCTAAGATTTTCAACATAGTGTATTAGGCCTTGATTACCAA
GATTTTGATCAGAGGAACGGTTCTGTTGAATTTTACAATTCATGGTAATT
TGATGACCATGTTAATCGATTACCCTTTTCATGAGAACAATTTTTTAAGA
ACAATGAGAATATAACATATAATAATAATAAATAATAACAATTGCTGAAT
TTCAAGTAATTTAAGGGTGACAGTAGTAAAAACTAGCCCAGTGGGTTTTA
ACCTAGAATTCCTCAATTCTGCCCAAATACCAGAATTTTACTCTTAATAA
GAACAGGATAAGAACAATTTGAGATCCAAAGTGCCAAAATGAAAAGAATA
GTCGATAGCCTCAACAAAAGTTTTCTTGTTCTTAGAAAGAATACTTAAAA
ACTTCTACCTAAATATCATAATTCCAAGTGCGAACTCAAGACATAAAAAA
TGTCCAAAGTTGTGCGTGGGTCACCCGGTAGTTTAAAAGGACTTTTGTAT
AAATTGTAATGTTTCTTTTCCAATAGATCATTCTCCAGTCCAACAATGCG
GACAATACATATCATCCTATTATCTATCGTCATTCTCGCATCTTCATTGC
AAGCTAAACGTTTCACAGATGTCGAGAAAAAATTAAACGCTATTAAAAAT
CATCAACTCTCTGTTGAAAAATGGAAGAAATTATATTCATTAAAACCAGT
AGCTGAAAAACCTCAGAAACCAGTGAAACCGCCAACAGCTACGGTAACTC
AAACTGAAGAGAAAGTATCAAGCGCTGTTACCAACAAAAAGCCACAGCTT
CAACAACAGCAAAAGCCATTGAAACCTTCACCACCCAAACAACCATATCA
ACCAAAACCAGCTCCAACGATCGAGAAAGATCCTAACGAAGAAAAACAAA
AGAAAGAAAGGTATGAGCAATAAGTTATACTCTTTTTTATGAGTAATGAG
TTGTAGGCTTTTGATAAAAAATAAAGGCCATTTCATTGATTCAATGAACC
TTGTCGAATCTGGAAGGATGTAGTTCTGGTTCCAAAAATGCTCCAACCAA
ACACTGTTGTTAGTTATCGGAAGTCCATGATAAGTGGCGGTATGAAAAAA
ACATAATATTGAAGTTGTAAAATTTGCTTTGTTTGTGATGTGTGGTATTG
ATATTATTGTTGTCAAAATGTATTGTTTTATTTTTTTCATAGTTACAAAA
ATAAAGGTAAACCTGGTCCAGAGGTTGTATGGCGAGTCGAGTCACACCCT
GGAGAAGATGCCAAAGTTCCAAGCACATTCCAAAACGGTGTAGGACAACC
ATCTACCACAAATAACCAGACTCCAGGTACTCAAGGAACTGGAGATATCC
AACAAACTGACTTACCAGCTGCTGTTGGAAAACATGGTAAAAAACCATCC
AAGTTAGGAAAGAAAAAAGGAAAAGGACATCGACATCATCATCATAGGAA
ACATGCTGTAACTGGTACCAAAGTATGTGTTGTTTTTTAATCGTTTAATA
TTTTCTTTAAGTTTGTTTTAACTTCTTTGATTCTTAATGTTTTTATTTTA
TTAACAGAAAGAGGACGTTGCAATCAAAGCTGCCTCTTCAGCTGAAGTAA
ACTTGGATGGTAAAGACAAGGACTGTCCACCTCCTCCACCACCATGTCCA
CCTCCACCCCCACCCCCTCCATGTCCACCACCACCTCCACCTCCTCCTCC
ACCGCCTCCACCACCGCCATGTCCACCGCCCTGCCCACCTCCACCATGTC
CTCCACCTCCACCTTGCCCACCACCATGTCCACCTCCACCCCCACCCCCT
CCATGTCCACCACCACCTCCACCTCCTCCTCCACCGCCTCCACCACCGCC
ATGTCCACCGCCCTGCCCACCTCCACCATGTCCTCCACCTCCACCTTGCC
CACCACCATGTCCACCTCCACCCCCACCCCCTCCATGTCCACCACCACCT
CCACCTCCTCCTCCACCGCCTCCACCACCGCCATGTCCACCGCCCTGCCC
ACCTCCACCATGTCCTCCACCTCCACCTTGCCCACCACCATGTCCACCTC
CACCCCCACCCCCTCCATGTCCACCACCACCTCCACCTCCTCCTCCACCG
CCTCCACCACCGCCATGTCCACCGCCCTGCCCACCTCCACCATGTCCTCC
ACCTCCACCTTGCCCACCACCATGTCCACCTCCACCCCCACCCCCTCCAT
GTCCACCACCACCTCCACCTCCTCCTCCACCGCCTCCACCACCGCCATGT
CCACCGCCCTGCCCACCTCCACCATGTCCTCCACCTCCACCTTGCCCACC
ACCATGTCCACCTCCACCCCCACCCCCTCCATGTCCACCACCACCTCCAC
CTCCACCACCACCTCCATGTCCACCGCCCTGCCCACCACCACCAATCCCT
CCTCCACCGATGGAAACGACCGAAGTTGAAACTCAGGTAAGATGATTTAT
TCAGTCATGCATGCTTTCAAAAACATTTTTTCCATGTGACAACACTTACA
CAATTTTGACATAACCGAAACATCTTTTAAATCTCTTATCTGGAGACACG
AGCATACAAGACTAATACGGGGTCCGCAAAGAACAGCGAGATTGAAATAC
CTTAATACAGTGGAGTCTCTGTAACTGAGGTTTATAGGGCAGTGTTAACC
GAAGGGACGAAATTATTTGTTCGAGTTATGGAGACATTCGAGTTATAGAA
TTTCGAGTTAAAGAAACTCCACTCTATCTTATTATGACTTTAGAATCAAT
TTGCTATTCTTTCTATCCTTTTTTTACTATAGCCACCAAAATGTAAAGGA
AACTCTGAAGCAACTATAAAGACAGGCAAACAAGCCAAAGACGGATGTTA
ACGTTAGACTCATGACATATACATTGACAGACTGACTGACAAATAACAAA
GACGTTTAAAGTCGTTACCTTCTAGCTTCTACGAAGCGACTCAAACAAAG
GTTTTAATCAAAACAAAAGCACCCTGTACTGACGCCTTGGCCAACATTCT
ACCTCATGTTTGTGTGTTTTCTTACATTTCTGTAGGAGAAAGAAAAGGAG
ATCCCAGTTCTGAATAACGATCCGTGTTGTTAGATTCTTCACTTTTAAGA
TGAATGAATGAATGAATGAATGAAATGAGATTGAAAATGACTGAAAGAAA
CGACTCTCCAAGCTGCATTGATCTGGATTGTGATTTTCAGCATTTTTTTC
CTTTATGCTTTTGTAAATTTAACAAAACTATTATTCAATTTGTTCGATTG
AGCTTGAGTCTTTTCTTTCACTCACTTTCGCTTTTCATTCCTCGATTACA
ATGTCTTAAATGCATGCATCCTCCATTTTTGTATTGAAAAAAATCATCTA
AAGCATGAAGTGAAGATTTAGTGAGAGAATCGAGTCAAGCTTTTTAGAAT
CATTTCAAGAATCAAAGAGCAATATTACACCCCTGTCTCGCATCCCCGGT
GGAACTTTTTTTCTCAGTAGGGATAAAAATTCCTATTGAAATCCCAATGG
GGATAGAAATTCCTTTGTTCCAAGGTTAGGAAGTGAATTTTTTTAAACAT
TGAATTTCGAATGGGAATTTTTGTCAATCTTTCAAGTGAGTTCAACTGGG
TTCCCAGCGGGTCTGTGACACAGGGGTGTAAAATACTTTTTTTAGATAAA
AACACTAGATTTCATGTTTTGTTTATATTAAAAATCTACATTTCATGATT
TGAAATCTGCTCTTTATTTCTTGAAAAGATCTTTTAGTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043842XLOC_043842Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070393-exon-scaffold_55-1575043694:145992..146153TCONS_00070393-exon-scaffold_55-1575043694:145992..146153Clytia hemisphaericaexon
TCONS_00070393-exon-scaffold_55-1575043694:144444..144827TCONS_00070393-exon-scaffold_55-1575043694:144444..144827Clytia hemisphaericaexon
TCONS_00070393-exon-scaffold_55-1575043694:143882..144161TCONS_00070393-exon-scaffold_55-1575043694:143882..144161Clytia hemisphaericaexon
TCONS_00070393-exon-scaffold_55-1575043694:142918..143796TCONS_00070393-exon-scaffold_55-1575043694:142918..143796Clytia hemisphaericaexon
TCONS_00070393-exon-scaffold_55-1575043694:141612..142571TCONS_00070393-exon-scaffold_55-1575043694:141612..142571Clytia hemisphaericaexon
TCONS_00070393-exon-scaffold_55-1510915933:145992..146153TCONS_00070393-exon-scaffold_55-1510915933:145992..146153Clytia hemisphaericaexon
TCONS_00070393-exon-scaffold_55-1510915933:144444..144827TCONS_00070393-exon-scaffold_55-1510915933:144444..144827Clytia hemisphaericaexon
TCONS_00070393-exon-scaffold_55-1510915933:143882..144161TCONS_00070393-exon-scaffold_55-1510915933:143882..144161Clytia hemisphaericaexon
TCONS_00070393-exon-scaffold_55-1510915933:142918..143796TCONS_00070393-exon-scaffold_55-1510915933:142918..143796Clytia hemisphaericaexon
TCONS_00070393-exon-scaffold_55-1510915933:141612..142571TCONS_00070393-exon-scaffold_55-1510915933:141612..142571Clytia hemisphaericaexon
TCONS_00070393-exon-scaffold_55-1491911889:145992..146153TCONS_00070393-exon-scaffold_55-1491911889:145992..146153Clytia hemisphaericaexon
TCONS_00070393-exon-scaffold_55-1491911889:144444..144827TCONS_00070393-exon-scaffold_55-1491911889:144444..144827Clytia hemisphaericaexon
TCONS_00070393-exon-scaffold_55-1491911889:143882..144161TCONS_00070393-exon-scaffold_55-1491911889:143882..144161Clytia hemisphaericaexon
TCONS_00070393-exon-scaffold_55-1491911889:142918..143796TCONS_00070393-exon-scaffold_55-1491911889:142918..143796Clytia hemisphaericaexon
TCONS_00070393-exon-scaffold_55-1491911889:141612..142571TCONS_00070393-exon-scaffold_55-1491911889:141612..142571Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:141612..146153 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.569464	0.603091	0.358208	0.409063	3.66443	2.98978	18.1774	21.3197	5.78645	6.86493	6.79879	7.59555	23.6626	23.8094	14.755	51.4789	24.6048	26.6909	0.214084	0.224961	17.6772	20.4408	12.9171	15.9054	26.3072	34.0469	3.48418	1.47645	0.174859	0.240316
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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