TCONS_00070408 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070408
Unique NameTCONS_00070408
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1781

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070408 ID=TCONS_00070408|Name=TCONS_00070408|organism=Clytia hemisphaerica|type=transcript|length=1781bp
tttggaaaaatttgatgacgtcagcaaaaaattgcatttttcgatttttt
gcattttttgctgacgtcatcaaaattNAGTGCATTAACCATgaatgaaa
ttaaactttttcacACAGGCATCCCAGCATCAGGGATCTTGGACGAAGCT
ACGGTTGAGTTGATGAAGACACCTCGTTGTGGAGTGAAAGATGTGACAGG
AAGGTTGAGTGGTGTCAAAAGAAAGCGAAGATATACCCTTCAAGGATCCA
AATGGATGAAAAAGGATTTAACCTGGAAGTTAATCAACGACAATAACGAC
GGGTTAACACGTCAACAAGTCGAAGATGTCATGACTCAATCTTTCGATAA
ATGGCACAAAATCACCaacttgaatttcaaaaaacttgaaCACACTGATG
CCACTGAAGCTGATATTGTGGTCAAGTTTGGAGTCGGTTCCCATGGCGAT
CCTTATCACTTTGATGGACGCGGTGGAACTCTCGCGCATGCGTTTTACCC
TCACAACAATCTAGGACTTTCAGGGGACGTCCattttgatgatgatgaag
tttACACGATCGGTTCATCGCAAGGAAAAAGTTTATTATGGGTTGCCGTC
CACGAGATTGGCCATTCTATTGGATTGGAACATTCGAATCTTCGTGAAGC
AGTCATGTATCCATGGTATCGAGGAAATGGCGGACGtgattttgatttga
atgaGGATGATGTCATTGGAGCTCAACATATTTATGGATCAAGATCACCA
GACCCAGAGGAATCAAAaactacaacaacaaccaccCTTGCACCTGGAGA
AACAACGCCCTCCCTTCCACCCTCAGTTTGTATCAATCAATTCAAAGCCG
CCATTCTCCACAAAAGCACTGGCAAAACGTACATCATCAACAACGGTTTC
GTTTACACCCTCGGAAAACAATTAGGAATCGAATCAGGACCGACTCCAGT
GAAGGAAATTTTTCCGGGAGTCTCGAATATTGATTCACTTTACTACAACA
CTGATGAAAACATTGTTGTTCATGATGGTAAAAGATATTACACATTCAAT
GACATTAATGGAAGAATGATAGAATCGGGCACCATCCAAAACAAATATGg
cctctctgatgacgtcaacAAGATCGATGCCGCATTTATTTGGATTGGCA
ATGGACGCGTTTATTTGTTTGTCGATAAAATGTATTATCGATTCGATGAT
AATCGAGCAAGTGTCGATTATGGATATCCGCGAGTCATTAAAGACAATTG
GAAAGGTTTATCGGAAAGTGTGGATGGAGTATCAATTTGGAGAAACAGAG
TAACTTATTTCTTTAAAGGCAATTCATACTACCGCTTCAATGATAAACGA
ATCCGTGTCGAAGATAATTACCCAAGACCCATCAACCATATCTGGACGCA
ATGCACTGTAGCTAAATTAAATACCCAGAATGCTTCAGTGACATCAAAAG
CTTCTATTTTGGTCACCTTTGGAATGTTGGCAATCATGAAATTCCTATTT
TTGTAAAGTGCtagatatttttaaattgtccaTTTGTTAATGtgtaaatt
ttgataatttttagaCTTTCTATTTTAACATTATTTATTTTACAGTGATT
TCTATAAGTGGTAAATTATTCTTTCACATCCATATTTGTAAACGCTATTT
TTAtccaaaatctttatttttatcccattaatcaattttttatatAGTAT
AAGAATTGATAATCTTTATATACCGATTTTATTGAACATAATATCATAAA
AATCATGACTCCAAAACTTATTTATACCtca
Run BLAST on NCBI

protein sequence of Matrix metalloproteinase

>TCONS_00070408-protein ID=TCONS_00070408-protein|Name=Matrix metalloproteinase|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
MNEIKLFHTGIPASGILDEATVELMKTPRCGVKDVTGRLSGVKRKRRYTL
QGSKWMKKDLTWKLINDNNDGLTRQQVEDVMTQSFDKWHKITNLNFKKLE
HTDATEADIVVKFGVGSHGDPYHFDGRGGTLAHAFYPHNNLGLSGDVHFD
DDEVYTIGSSQGKSLLWVAVHEIGHSIGLEHSNLREAVMYPWYRGNGGRD
FDLNEDDVIGAQHIYGSRSPDPEESKTTTTTTLAPGETTPSLPPSVCINQ
FKAAILHKSTGKTYIINNGFVYTLGKQLGIESGPTPVKEIFPGVSNIDSL
YYNTDENIVVHDGKRYYTFNDINGRMIESGTIQNKYGLSDDVNKIDAAFI
WIGNGRVYLFVDKMYYRFDDNRASVDYGYPRVIKDNWKGLSESVDGVSIW
RNRVTYFFKGNSYYRFNDKRIRVEDNYPRPINHIWTQCTVAKLNTQNASV
TSKASILVTFGMLAIMKFLFL
Run BLAST on NCBI

transcript from alignment at scaffold_55:365243..369450-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070408 ID=TCONS_00070408|Name=TCONS_00070408|organism=Clytia hemisphaerica|type=transcript|length=4208bp|location=Sequence derived from alignment at scaffold_55:365243..369450- (Clytia hemisphaerica)
TTTGGAAAAATTTGATGACGTCAGCAAAAAATTGCATTTTTCGATTTTTT
GCATTTTTTGCTGACGTCATCAAAATTNAGTGCATTAACCATGAATGAAA
TTAAACTTTTTCACACAGGCATCCCAGCATCAGGGATCTTGGACGAAGCT
ACGGTTGAGTTGATGAAGACACCTCGTTGTGGAGTGAAAGATGTGACAGG
AAGGTTGAGTGGTGTCAAAAGAAAGCGAAGATATACCCTTCAAGGATCCA
AATGGATGAAAAAGGTAAGAATCAGTAAGCAAACAAAATGTCTTTTAAAC
ATACATTACGATATCGCTTAGAAGGAAGAAACTCTCGTTATGATGAGATC
TTAAGAACATTATATGTTTTTTTCAATACCGAGTGGTTTTTCACGGTAAA
ATTAAATATAGGCAATAGGTAAGTGCAAGGAAAAAATTTGGTGGCAAGGG
AGTTTTGAAAATTTTTAACCAGCTACCCATCATCAACTTTGTATCAACTT
CCAGCGCAGCTCCTGGTTTAGTCAAACGGAAATTCATGCATATAGACACT
CGAGTGACTTAGGGCAAGTCTCAAAAACCTAACGGTTTACCCTAAGTTTT
CGCTACCAATAGCAGCCAGATTCAGAGATCCACTTAGGGCTCTAAAGTGC
CTCTATACCTTAAGGTTTCAGAACCCGGTTGTTACGTAATTAAATATTAA
CCTAAAAATTAATTATCAAAGAAATTGTAATCATGACATCATAATTTGGT
CGAATTTGGTGACGTCATGAATCGTATAATCGCTATAATATTAAAAATAC
ATGTCCAATCTTTCCCAAATTTGAACCAAAGATGCATCTAACTCAAATGT
AACTTTTTGAAAAAGAAAATTTGGAAAAATTTAATGACGTCAGCAAAAAA
TAGCATTTTTCGATTTTTTGCATTTTTTGCTGACGTCATCAAAATTTTCA
AAGAATTTTTTCGTTGAAAAGTTCGGCATCATTAAGATGCATCTTTGGTC
CAAATTTGAGAAAGATTCGACATGTACTGATAGAGCTAGAGCTAATTTAC
GATTTATGACGTCATAAAATGATGACGTCATAATTCACACTTTCTTTAAT
AATTAATTTTTAGGTTAATATTTAATTACGTAACAACCGGGTCCTGTAAC
CTTAAGGTATAAGTCATCTAAAAATCCATAAGTGAATCCCTGAGAATGGG
TGCTATTGGTCGCGGATTCGGGATTTGTGATTTTTAAAAATCTAGACACG
CACTAACTCACCCGAGCAATAACTTCATTCCATCTTTAGGATTTAACCTG
GAAGTTAATCAACGACAATAACGACGGGTTAACACGTCAACAAGTCGAAG
ATGTCATGACTCAATCTTTCGATAAATGGCACAAAATCACCAACTTGAAT
TTCAAAAAACTTGAACACACTGATGCCACTGAAGCTGATATTGTGGTCAA
GTTTGGAGTCGGTTCCCATGGCGATCCTTATCACTTTGATGGACGCGGTG
GAACTCTCGCGCATGCGTTTTACCCTCACAACAATCTAGGTTTGTAAATT
TAAACATAAACTTTTTTTTTGAAGTTTTCTTCTTTGTTCTTCTCATCGTC
ATTTCGATTATGATCTTGTTGATTATGGGAACCTTGTCCTTGTGATCGTT
AACGGTTTTGAGCAACTTTATTGAGATCGTTTGGTAAAATCAAAGTTTAT
ACATCTTACATTTTTGGCTTTCCATTTAACTTTCACTGTATTTCTCACAA
AAATCTGACGACCTGGTTTCTATTCAATAGGACTTTCAGGGGACGTCCAT
TTTGATGATGATGAAGTTTACACGATCGGTTCATCGCAAGGAAAAAGTTT
ATTATGGGTTGCCGTCCACGAGGTGAGTTCACTGTCAAAGTCTTTGTGAA
AGCGATCTTTATTTACACTTCAAGAAGCTTTGAATTCTCAAAAATTTACC
ATAACCACACATCGCTATTTGGTACCCTTAAAGAAAATACAGTCATGTGA
AAATATCAAATATCGCATTTATTTTAACTTGACCGATCAAAATAGGCTAA
AACAATGAAATATATTCATAAATCTTTTTAGATTGGCCATTCTATTGGAT
TGGAACATTCGAATCTTCGTGAAGCAGTCATGTATCCATGGTATCGAGGA
AATGGCGGACGTGATTTTGATTTGAATGAGGATGATGTCATTGGAGCTCA
ACATATTTATGGTAAGGTGATGTTTGGTCGTTCTAAGAAGCTTTAGTTTA
AATTAAGAGCAGGAAATAACTATGAATTGGGATGGCCAGATCAAAAATTT
AATCGCATTTTCATCTAACCAAGGAATATAATTTCAAAATTTCATAAAAA
TTAAAATATTGCATTTCTTCTAAAATTCCACTTTTCACAAATAGGATCAA
GATCACCAGACCCAGAGGAATCAAAAACTACAACAACAACCACCCTTGCA
CCTGGAGAAACAACGCCCTCCCTTCCACCCTCAGTTTGTATCAATCAATT
CAAAGCCGCCATTCTCCACAAAAGCACTGGCAAAACGTACATCATCAACA
ACGGTTTCGTTTACACCCTCGGAAAACAATTAGGAATCGAATCAGGACCG
ACTCCAGTGAAGGAAATTTTTCCGGGAGTCTCGAATATTGATTCACTTTA
CTACAACACTGATGAAAACATTGTTGTTCATGATGGTAAAAGGTAATTTT
TCAGACAATTAGCCAATTAGCCATATAATCACTGCCTTTTAATCTCTTCA
AAAGAAGTACCTTGAGCACCACAGCTCAGCTTTCCTGAAATCCAACCTGT
GGAGACGGACCATATGAGTTTTCTAATATTTATACTGACGGCACAAAAGA
AAACCTTGGTTACTTTCGCAGCTTCATTCAAAGTCAACAACTTAAATTTA
TGACATTCATGACGTAATGTTTACAGAAATACCCCGGTTTTAGCCAGTAG
TGGCACATTTAAACTAGACAAAAGTTGTATAAAATTTGCCACTACTGGCA
AAAACCGGGGCCTTTCCATAGAAAACAATACGCCATGAATATCATGAATA
GCCCTAAAAGAAATCAGCCTAATATTTCCTCATTTTTCAAAATTGACAGA
TATTACACATTCAATGACATTAATGGAAGAATGATAGAATCGGGCACCAT
CCAAAACAAATATGGCCTCTCTGATGACGTCAACAAGATCGATGCCGCAT
TTATTTGGATTGGCAATGGACGCGTTTATTTGTTTGTCGATAAAATGTAT
TATCGATTCGATGATAATCGAGCAAGTGTCGATTATGGATATCCGCGAGT
CATTAAAGACAATTGGAAAGGTTTATCGGAAAGTGTGGATGGAGTATCAA
TTTGGAGAAACAGAGTAACTTATTTCTTTAAAGGTAAGAGATGGGAGCTG
GGTTCTTAACTTAGCAAGTCTTAAACGCGCAATAAAATTTATTACAAACG
TGTTAAAAAACTTCGTGTAGTTTTAAAGTGTTTTATATAATTAACGTGAA
TTTCTAAAGTGTCTAACATTTATCCGAAAGATGAAAAATATTTCACTCTG
AGACACCATGCTCAGCTTGAGTCCACAACTATTGAATTACCAGACAAAAT
ATGATATTTGGTTATAGAGGACCATAACAGTGTAAGCTGATTTTTTAGGG
TCCTTTTACACGAAATTTTATCATTAATTTTTCAAATTACTCTAATTAAA
CCATGGCTTATATTTTGAATTCATCATATCCGTTTTTTTCATTAGGCAAT
TCATACTACCGCTTCAATGATAAACGAATCCGTGTCGAAGATAATTACCC
AAGACCCATCAACCATATCTGGACGCAATGCACTGTAGCTAAATTAAATA
CCCAGAATGCTTCAGTGACATCAAAAGCTTCTATTTTGGTCACCTTTGGA
ATGTTGGCAATCATGAAATTCCTATTTTTGTAAAGTGCTAGATATTTTTA
AATTGTCCATTTGTTAATGTGTAAATTTTGATAATTTTTAGACTTTCTAT
TTTAACATTATTTATTTTACAGTGATTTCTATAAGTGGTAAATTATTCTT
TCACATCCATATTTGTAAACGCTATTTTTATCCAAAATCTTTATTTTTAT
CCCATTAATCAATTTTTTATATAGTATAAGAATTGATAATCTTTATATAC
CGATTTTATTGAACATAATATCATAAAAATCATGACTCCAAAACTTATTT
ATACCTCA

Coding sequence (CDS) from alignment at scaffold_55:365243..369450-

>TCONS_00070408 ID=TCONS_00070408|Name=TCONS_00070408|organism=Clytia hemisphaerica|type=CDS|length=9912bp|location=Sequence derived from alignment at scaffold_55:365243..369450- (Clytia hemisphaerica)
GCAATTCATACTACCGCTTCAATGATAAACGAATCCGTGTCGAAGATAAT
TACCCAAGACCCATCAACCATATCTGGACGCAATGCACTGTAGCTAAATT
AAATACCCAGAATGCTTCAGTGACATCAAAAGCTTCTATTTTGGTCACCT
TTGGAATGTTGGCAATCATGAAATTCCTATTTTTGTAAATATTACACATT
CAATGACATTAATGGAAGAATGATAGAATCGGGCACCATCCAAAACAAAT
ATGGCCTCTCTGATGACGTCAACAAGATCGATGCCGCATTTATTTGGATT
GGCAATGGACGCGTTTATTTGTTTGTCGATAAAATGTATTATCGATTCGA
TGATAATCGAGCAAGTGTCGATTATGGATATCCGCGAGTCATTAAAGACA
ATTGGAAAGGTTTATCGGAAAGTGTGGATGGAGTATCAATTTGGAGAAAC
AGAGTAACTTATTTCTTTAAAGGATCAAGATCACCAGACCCAGAGGAATC
AAAAACTACAACAACAACCACCCTTGCACCTGGAGAAACAACGCCCTCCC
TTCCACCCTCAGTTTGTATCAATCAATTCAAAGCCGCCATTCTCCACAAA
AGCACTGGCAAAACGTACATCATCAACAACGGTTTCGTTTACACCCTCGG
AAAACAATTAGGAATCGAATCAGGACCGACTCCAGTGAAGGAAATTTTTC
CGGGAGTCTCGAATATTGATTCACTTTACTACAACACTGATGAAAACATT
GTTGTTCATGATGGTAAAAGATTGGCCATTCTATTGGATTGGAACATTCG
AATCTTCGTGAAGCAGTCATGTATCCATGGTATCGAGGAAATGGCGGACG
TGATTTTGATTTGAATGAGGATGATGTCATTGGAGCTCAACATATTTATG
GACTTTCAGGGGACGTCCATTTTGATGATGATGAAGTTTACACGATCGGT
TCATCGCAAGGAAAAAGTTTATTATGGGTTGCCGTCCACGAGGATTTAAC
CTGGAAGTTAATCAACGACAATAACGACGGGTTAACACGTCAACAAGTCG
AAGATGTCATGACTCAATCTTTCGATAAATGGCACAAAATCACCAACTTG
AATTTCAAAAAACTTGAACACACTGATGCCACTGAAGCTGATATTGTGGT
CAAGTTTGGAGTCGGTTCCCATGGCGATCCTTATCACTTTGATGGACGCG
GTGGAACTCTCGCGCATGCGTTTTACCCTCACAACAATCTAGATGAATGA
AATTAAACTTTTTCACACAGGCATCCCAGCATCAGGGATCTTGGACGAAG
CTACGGTTGAGTTGATGAAGACACCTCGTTGTGGAGTGAAAGATGTGACA
GGAAGGTTGAGTGGTGTCAAAAGAAAGCGAAGATATACCCTTCAAGGATC
CAAATGGATGAAAAAGGCAATTCATACTACCGCTTCAATGATAAACGAAT
CCGTGTCGAAGATAATTACCCAAGACCCATCAACCATATCTGGACGCAAT
GCACTGTAGCTAAATTAAATACCCAGAATGCTTCAGTGACATCAAAAGCT
TCTATTTTGGTCACCTTTGGAATGTTGGCAATCATGAAATTCCTATTTTT
GTAAATATTACACATTCAATGACATTAATGGAAGAATGATAGAATCGGGC
ACCATCCAAAACAAATATGGCCTCTCTGATGACGTCAACAAGATCGATGC
CGCATTTATTTGGATTGGCAATGGACGCGTTTATTTGTTTGTCGATAAAA
TGTATTATCGATTCGATGATAATCGAGCAAGTGTCGATTATGGATATCCG
CGAGTCATTAAAGACAATTGGAAAGGTTTATCGGAAAGTGTGGATGGAGT
ATCAATTTGGAGAAACAGAGTAACTTATTTCTTTAAAGGATCAAGATCAC
CAGACCCAGAGGAATCAAAAACTACAACAACAACCACCCTTGCACCTGGA
GAAACAACGCCCTCCCTTCCACCCTCAGTTTGTATCAATCAATTCAAAGC
CGCCATTCTCCACAAAAGCACTGGCAAAACGTACATCATCAACAACGGTT
TCGTTTACACCCTCGGAAAACAATTAGGAATCGAATCAGGACCGACTCCA
GTGAAGGAAATTTTTCCGGGAGTCTCGAATATTGATTCACTTTACTACAA
CACTGATGAAAACATTGTTGTTCATGATGGTAAAAGATTGGCCATTCTAT
TGGATTGGAACATTCGAATCTTCGTGAAGCAGTCATGTATCCATGGTATC
GAGGAAATGGCGGACGTGATTTTGATTTGAATGAGGATGATGTCATTGGA
GCTCAACATATTTATGGACTTTCAGGGGACGTCCATTTTGATGATGATGA
AGTTTACACGATCGGTTCATCGCAAGGAAAAAGTTTATTATGGGTTGCCG
TCCACGAGGATTTAACCTGGAAGTTAATCAACGACAATAACGACGGGTTA
ACACGTCAACAAGTCGAAGATGTCATGACTCAATCTTTCGATAAATGGCA
CAAAATCACCAACTTGAATTTCAAAAAACTTGAACACACTGATGCCACTG
AAGCTGATATTGTGGTCAAGTTTGGAGTCGGTTCCCATGGCGATCCTTAT
CACTTTGATGGACGCGGTGGAACTCTCGCGCATGCGTTTTACCCTCACAA
CAATCTAGATGAATGAAATTAAACTTTTTCACACAGGCATCCCAGCATCA
GGGATCTTGGACGAAGCTACGGTTGAGTTGATGAAGACACCTCGTTGTGG
AGTGAAAGATGTGACAGGAAGGTTGAGTGGTGTCAAAAGAAAGCGAAGAT
ATACCCTTCAAGGATCCAAATGGATGAAAAAGGCAATTCATACTACCGCT
TCAATGATAAACGAATCCGTGTCGAAGATAATTACCCAAGACCCATCAAC
CATATCTGGACGCAATGCACTGTAGCTAAATTAAATACCCAGAATGCTTC
AGTGACATCAAAAGCTTCTATTTTGGTCACCTTTGGAATGTTGGCAATCA
TGAAATTCCTATTTTTGTAAATATTACACATTCAATGACATTAATGGAAG
AATGATAGAATCGGGCACCATCCAAAACAAATATGGCCTCTCTGATGACG
TCAACAAGATCGATGCCGCATTTATTTGGATTGGCAATGGACGCGTTTAT
TTGTTTGTCGATAAAATGTATTATCGATTCGATGATAATCGAGCAAGTGT
CGATTATGGATATCCGCGAGTCATTAAAGACAATTGGAAAGGTTTATCGG
AAAGTGTGGATGGAGTATCAATTTGGAGAAACAGAGTAACTTATTTCTTT
AAAGGATCAAGATCACCAGACCCAGAGGAATCAAAAACTACAACAACAAC
CACCCTTGCACCTGGAGAAACAACGCCCTCCCTTCCACCCTCAGTTTGTA
TCAATCAATTCAAAGCCGCCATTCTCCACAAAAGCACTGGCAAAACGTAC
ATCATCAACAACGGTTTCGTTTACACCCTCGGAAAACAATTAGGAATCGA
ATCAGGACCGACTCCAGTGAAGGAAATTTTTCCGGGAGTCTCGAATATTG
ATTCACTTTACTACAACACTGATGAAAACATTGTTGTTCATGATGGTAAA
AGATTGGCCATTCTATTGGATTGGAACATTCGAATCTTCGTGAAGCAGTC
ATGTATCCATGGTATCGAGGAAATGGCGGACGTGATTTTGATTTGAATGA
GGATGATGTCATTGGAGCTCAACATATTTATGGACTTTCAGGGGACGTCC
ATTTTGATGATGATGAAGTTTACACGATCGGTTCATCGCAAGGAAAAAGT
TTATTATGGGTTGCCGTCCACGAGGATTTAACCTGGAAGTTAATCAACGA
CAATAACGACGGGTTAACACGTCAACAAGTCGAAGATGTCATGACTCAAT
CTTTCGATAAATGGCACAAAATCACCAACTTGAATTTCAAAAAACTTGAA
CACACTGATGCCACTGAAGCTGATATTGTGGTCAAGTTTGGAGTCGGTTC
CCATGGCGATCCTTATCACTTTGATGGACGCGGTGGAACTCTCGCGCATG
CGTTTTACCCTCACAACAATCTAGATGAATGAAATTAAACTTTTTCACAC
AGGCATCCCAGCATCAGGGATCTTGGACGAAGCTACGGTTGAGTTGATGA
AGACACCTCGTTGTGGAGTGAAAGATGTGACAGGAAGGTTGAGTGGTGTC
AAAAGAAAGCGAAGATATACCCTTCAAGGATCCAAATGGATGAAAAAGGC
AATTCATACTACCGCTTCAATGATAAACGAATCCGTGTCGAAGATAATTA
CCCAAGACCCATCAACCATATCTGGACGCAATGCACTGTAGCTAAATTAA
ATACCCAGAATGCTTCAGTGACATCAAAAGCTTCTATTTTGGTCACCTTT
GGAATGTTGGCAATCATGAAATTCCTATTTTTGTAAATATTACACATTCA
ATGACATTAATGGAAGAATGATAGAATCGGGCACCATCCAAAACAAATAT
GGCCTCTCTGATGACGTCAACAAGATCGATGCCGCATTTATTTGGATTGG
CAATGGACGCGTTTATTTGTTTGTCGATAAAATGTATTATCGATTCGATG
ATAATCGAGCAAGTGTCGATTATGGATATCCGCGAGTCATTAAAGACAAT
TGGAAAGGTTTATCGGAAAGTGTGGATGGAGTATCAATTTGGAGAAACAG
AGTAACTTATTTCTTTAAAGGATCAAGATCACCAGACCCAGAGGAATCAA
AAACTACAACAACAACCACCCTTGCACCTGGAGAAACAACGCCCTCCCTT
CCACCCTCAGTTTGTATCAATCAATTCAAAGCCGCCATTCTCCACAAAAG
CACTGGCAAAACGTACATCATCAACAACGGTTTCGTTTACACCCTCGGAA
AACAATTAGGAATCGAATCAGGACCGACTCCAGTGAAGGAAATTTTTCCG
GGAGTCTCGAATATTGATTCACTTTACTACAACACTGATGAAAACATTGT
TGTTCATGATGGTAAAAGATTGGCCATTCTATTGGATTGGAACATTCGAA
TCTTCGTGAAGCAGTCATGTATCCATGGTATCGAGGAAATGGCGGACGTG
ATTTTGATTTGAATGAGGATGATGTCATTGGAGCTCAACATATTTATGGA
CTTTCAGGGGACGTCCATTTTGATGATGATGAAGTTTACACGATCGGTTC
ATCGCAAGGAAAAAGTTTATTATGGGTTGCCGTCCACGAGGATTTAACCT
GGAAGTTAATCAACGACAATAACGACGGGTTAACACGTCAACAAGTCGAA
GATGTCATGACTCAATCTTTCGATAAATGGCACAAAATCACCAACTTGAA
TTTCAAAAAACTTGAACACACTGATGCCACTGAAGCTGATATTGTGGTCA
AGTTTGGAGTCGGTTCCCATGGCGATCCTTATCACTTTGATGGACGCGGT
GGAACTCTCGCGCATGCGTTTTACCCTCACAACAATCTAGATGAATGAAA
TTAAACTTTTTCACACAGGCATCCCAGCATCAGGGATCTTGGACGAAGCT
ACGGTTGAGTTGATGAAGACACCTCGTTGTGGAGTGAAAGATGTGACAGG
AAGGTTGAGTGGTGTCAAAAGAAAGCGAAGATATACCCTTCAAGGATCCA
AATGGATGAAAAAGGCAATTCATACTACCGCTTCAATGATAAACGAATCC
GTGTCGAAGATAATTACCCAAGACCCATCAACCATATCTGGACGCAATGC
ACTGTAGCTAAATTAAATACCCAGAATGCTTCAGTGACATCAAAAGCTTC
TATTTTGGTCACCTTTGGAATGTTGGCAATCATGAAATTCCTATTTTTGT
AAATATTACACATTCAATGACATTAATGGAAGAATGATAGAATCGGGCAC
CATCCAAAACAAATATGGCCTCTCTGATGACGTCAACAAGATCGATGCCG
CATTTATTTGGATTGGCAATGGACGCGTTTATTTGTTTGTCGATAAAATG
TATTATCGATTCGATGATAATCGAGCAAGTGTCGATTATGGATATCCGCG
AGTCATTAAAGACAATTGGAAAGGTTTATCGGAAAGTGTGGATGGAGTAT
CAATTTGGAGAAACAGAGTAACTTATTTCTTTAAAGGATCAAGATCACCA
GACCCAGAGGAATCAAAAACTACAACAACAACCACCCTTGCACCTGGAGA
AACAACGCCCTCCCTTCCACCCTCAGTTTGTATCAATCAATTCAAAGCCG
CCATTCTCCACAAAAGCACTGGCAAAACGTACATCATCAACAACGGTTTC
GTTTACACCCTCGGAAAACAATTAGGAATCGAATCAGGACCGACTCCAGT
GAAGGAAATTTTTCCGGGAGTCTCGAATATTGATTCACTTTACTACAACA
CTGATGAAAACATTGTTGTTCATGATGGTAAAAGATTGGCCATTCTATTG
GATTGGAACATTCGAATCTTCGTGAAGCAGTCATGTATCCATGGTATCGA
GGAAATGGCGGACGTGATTTTGATTTGAATGAGGATGATGTCATTGGAGC
TCAACATATTTATGGACTTTCAGGGGACGTCCATTTTGATGATGATGAAG
TTTACACGATCGGTTCATCGCAAGGAAAAAGTTTATTATGGGTTGCCGTC
CACGAGGATTTAACCTGGAAGTTAATCAACGACAATAACGACGGGTTAAC
ACGTCAACAAGTCGAAGATGTCATGACTCAATCTTTCGATAAATGGCACA
AAATCACCAACTTGAATTTCAAAAAACTTGAACACACTGATGCCACTGAA
GCTGATATTGTGGTCAAGTTTGGAGTCGGTTCCCATGGCGATCCTTATCA
CTTTGATGGACGCGGTGGAACTCTCGCGCATGCGTTTTACCCTCACAACA
ATCTAGATGAATGAAATTAAACTTTTTCACACAGGCATCCCAGCATCAGG
GATCTTGGACGAAGCTACGGTTGAGTTGATGAAGACACCTCGTTGTGGAG
TGAAAGATGTGACAGGAAGGTTGAGTGGTGTCAAAAGAAAGCGAAGATAT
ACCCTTCAAGGATCCAAATGGATGAAAAAGGCAATTCATACTACCGCTTC
AATGATAAACGAATCCGTGTCGAAGATAATTACCCAAGACCCATCAACCA
TATCTGGACGCAATGCACTGTAGCTAAATTAAATACCCAGAATGCTTCAG
TGACATCAAAAGCTTCTATTTTGGTCACCTTTGGAATGTTGGCAATCATG
AAATTCCTATTTTTGTAAATATTACACATTCAATGACATTAATGGAAGAA
TGATAGAATCGGGCACCATCCAAAACAAATATGGCCTCTCTGATGACGTC
AACAAGATCGATGCCGCATTTATTTGGATTGGCAATGGACGCGTTTATTT
GTTTGTCGATAAAATGTATTATCGATTCGATGATAATCGAGCAAGTGTCG
ATTATGGATATCCGCGAGTCATTAAAGACAATTGGAAAGGTTTATCGGAA
AGTGTGGATGGAGTATCAATTTGGAGAAACAGAGTAACTTATTTCTTTAA
AGGATCAAGATCACCAGACCCAGAGGAATCAAAAACTACAACAACAACCA
CCCTTGCACCTGGAGAAACAACGCCCTCCCTTCCACCCTCAGTTTGTATC
AATCAATTCAAAGCCGCCATTCTCCACAAAAGCACTGGCAAAACGTACAT
CATCAACAACGGTTTCGTTTACACCCTCGGAAAACAATTAGGAATCGAAT
CAGGACCGACTCCAGTGAAGGAAATTTTTCCGGGAGTCTCGAATATTGAT
TCACTTTACTACAACACTGATGAAAACATTGTTGTTCATGATGGTAAAAG
ATTGGCCATTCTATTGGATTGGAACATTCGAATCTTCGTGAAGCAGTCAT
GTATCCATGGTATCGAGGAAATGGCGGACGTGATTTTGATTTGAATGAGG
ATGATGTCATTGGAGCTCAACATATTTATGGACTTTCAGGGGACGTCCAT
TTTGATGATGATGAAGTTTACACGATCGGTTCATCGCAAGGAAAAAGTTT
ATTATGGGTTGCCGTCCACGAGGATTTAACCTGGAAGTTAATCAACGACA
ATAACGACGGGTTAACACGTCAACAAGTCGAAGATGTCATGACTCAATCT
TTCGATAAATGGCACAAAATCACCAACTTGAATTTCAAAAAACTTGAACA
CACTGATGCCACTGAAGCTGATATTGTGGTCAAGTTTGGAGTCGGTTCCC
ATGGCGATCCTTATCACTTTGATGGACGCGGTGGAACTCTCGCGCATGCG
TTTTACCCTCACAACAATCTAGATGAATGAAATTAAACTTTTTCACACAG
GCATCCCAGCATCAGGGATCTTGGACGAAGCTACGGTTGAGTTGATGAAG
ACACCTCGTTGTGGAGTGAAAGATGTGACAGGAAGGTTGAGTGGTGTCAA
AAGAAAGCGAAGATATACCCTTCAAGGATCCAAATGGATGAAAAAGGCAA
TTCATACTACCGCTTCAATGATAAACGAATCCGTGTCGAAGATAATTACC
CAAGACCCATCAACCATATCTGGACGCAATGCACTGTAGCTAAATTAAAT
ACCCAGAATGCTTCAGTGACATCAAAAGCTTCTATTTTGGTCACCTTTGG
AATGTTGGCAATCATGAAATTCCTATTTTTGTAAATATTACACATTCAAT
GACATTAATGGAAGAATGATAGAATCGGGCACCATCCAAAACAAATATGG
CCTCTCTGATGACGTCAACAAGATCGATGCCGCATTTATTTGGATTGGCA
ATGGACGCGTTTATTTGTTTGTCGATAAAATGTATTATCGATTCGATGAT
AATCGAGCAAGTGTCGATTATGGATATCCGCGAGTCATTAAAGACAATTG
GAAAGGTTTATCGGAAAGTGTGGATGGAGTATCAATTTGGAGAAACAGAG
TAACTTATTTCTTTAAAGGATCAAGATCACCAGACCCAGAGGAATCAAAA
ACTACAACAACAACCACCCTTGCACCTGGAGAAACAACGCCCTCCCTTCC
ACCCTCAGTTTGTATCAATCAATTCAAAGCCGCCATTCTCCACAAAAGCA
CTGGCAAAACGTACATCATCAACAACGGTTTCGTTTACACCCTCGGAAAA
CAATTAGGAATCGAATCAGGACCGACTCCAGTGAAGGAAATTTTTCCGGG
AGTCTCGAATATTGATTCACTTTACTACAACACTGATGAAAACATTGTTG
TTCATGATGGTAAAAGATTGGCCATTCTATTGGATTGGAACATTCGAATC
TTCGTGAAGCAGTCATGTATCCATGGTATCGAGGAAATGGCGGACGTGAT
TTTGATTTGAATGAGGATGATGTCATTGGAGCTCAACATATTTATGGACT
TTCAGGGGACGTCCATTTTGATGATGATGAAGTTTACACGATCGGTTCAT
CGCAAGGAAAAAGTTTATTATGGGTTGCCGTCCACGAGGATTTAACCTGG
AAGTTAATCAACGACAATAACGACGGGTTAACACGTCAACAAGTCGAAGA
TGTCATGACTCAATCTTTCGATAAATGGCACAAAATCACCAACTTGAATT
TCAAAAAACTTGAACACACTGATGCCACTGAAGCTGATATTGTGGTCAAG
TTTGGAGTCGGTTCCCATGGCGATCCTTATCACTTTGATGGACGCGGTGG
AACTCTCGCGCATGCGTTTTACCCTCACAACAATCTAGATGAATGAAATT
AAACTTTTTCACACAGGCATCCCAGCATCAGGGATCTTGGACGAAGCTAC
GGTTGAGTTGATGAAGACACCTCGTTGTGGAGTGAAAGATGTGACAGGAA
GGTTGAGTGGTGTCAAAAGAAAGCGAAGATATACCCTTCAAGGATCCAAA
TGGATGAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043847XLOC_043847Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Matrix metalloproteinaseTCONS_00070408-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070408-exon-scaffold_55-1575043694:369187..369450TCONS_00070408-exon-scaffold_55-1575043694:369187..369450Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1575043694:367912..368161TCONS_00070408-exon-scaffold_55-1575043694:367912..368161Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1575043694:367579..367670TCONS_00070408-exon-scaffold_55-1575043694:367579..367670Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1575043694:367240..367369TCONS_00070408-exon-scaffold_55-1575043694:367240..367369Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1575043694:366759..367056TCONS_00070408-exon-scaffold_55-1575043694:366759..367056Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1575043694:366068..366351TCONS_00070408-exon-scaffold_55-1575043694:366068..366351Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1575043694:365243..365705TCONS_00070408-exon-scaffold_55-1575043694:365243..365705Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1510915933:369187..369450TCONS_00070408-exon-scaffold_55-1510915933:369187..369450Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1510915933:367912..368161TCONS_00070408-exon-scaffold_55-1510915933:367912..368161Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1510915933:367579..367670TCONS_00070408-exon-scaffold_55-1510915933:367579..367670Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1510915933:367240..367369TCONS_00070408-exon-scaffold_55-1510915933:367240..367369Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1510915933:366759..367056TCONS_00070408-exon-scaffold_55-1510915933:366759..367056Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1510915933:366068..366351TCONS_00070408-exon-scaffold_55-1510915933:366068..366351Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1510915933:365243..365705TCONS_00070408-exon-scaffold_55-1510915933:365243..365705Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1491911889:369187..369450TCONS_00070408-exon-scaffold_55-1491911889:369187..369450Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1491911889:367912..368161TCONS_00070408-exon-scaffold_55-1491911889:367912..368161Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1491911889:367579..367670TCONS_00070408-exon-scaffold_55-1491911889:367579..367670Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1491911889:367240..367369TCONS_00070408-exon-scaffold_55-1491911889:367240..367369Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1491911889:366759..367056TCONS_00070408-exon-scaffold_55-1491911889:366759..367056Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1491911889:366068..366351TCONS_00070408-exon-scaffold_55-1491911889:366068..366351Clytia hemisphaericaexon
TCONS_00070408-exon-scaffold_55-1491911889:365243..365705TCONS_00070408-exon-scaffold_55-1491911889:365243..365705Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:365243..369450 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.135411	0.176063	1.02213	0.462574	29.7855	23.3377	14.8145	14.8632	7.36212	40.5852	11.0417	1.11226	27.0143	16.2412	18.685	7.59415	6.56461	28.3742	38.064	106.38	5.32421	5.74016	3.72053	3.05228	9.86195	24.2401	2849.44	2566.86	714.794	811.27
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021190Pept_M10A
IPR018487Hemopexin-like_repeat
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
IPR001818Pept_M10_metallopeptidase
IPR000585Hemopexin-like_dom
IPR033739M10A_MMP
IPR002477Peptidoglycan-bd-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Cellular Component
TermDefinition
GO:0031012extracellular matrix
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0031012 extracellular matrix
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00070408 vs. Swiss-Prot (Human)
Match: MMP24 (Matrix metalloproteinase-24 OS=Homo sapiens GN=MMP24 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 9.707e-72
Identity = 154/480 (32.08%), Postives = 247/480 (51.46%), Query Frame = 1 
Query:   61 LTSSKXSALTMNEIKLFHTGIPASGILDEATVELMKTPRCGVKDVTGRLSGVKRKRRYTLQGSKWMKKDLTWKLINDNNDGLTRQQVEDVMTQSFDKWHKITNLNFKKLEH----TDATEADIVVKFGVGSHGDPYHFDGRGGTLAHAFYPHNNLGLSGDVHFDDDEVYTIGSSQ--GKSLLWVAVHEIGHSIGLEHSNLREAVMYPWYRGNGGRDFDLNEDDVIGAQHIYGSRXXXXXXXXXXXXXXXXXXXXXXX----------------------LPPSVCINQFKAAILHKSTGKTYIINNGFVYTLGKQLGIESGPTPVKEIFPGV-SNIDSLYYNTDENIVVHDGKRYYTFNDINGRMIESGTIQNKYGLSDDVNK--IDAAFIWIGNGRVYLFVDKMYYRFDDNRASVDYGYPRVIKDNWKGLSESVDGVSIWRN-RVTYFFKGNSYYRFNDKRIRVEDNYPRPINHIWTQC 1404
            L S+K     ++ ++ F+ GIP +G+LD+ T+E MK PRCGV D    LS  +R +RY L G KW +K +T+  I++    +        + Q+FD W K+T L F+++ +    +D  EADI++ F  G HGD   FDG GG LAHA++P    G+ GD HFD DE +T+G++   G  L  VAVHE+GH++GLEHS+   A+M P+Y+     +F L +DD+ G Q IYG  +   E ++   T  +    +                           P++C   F    L +  G+ ++  + + + L      E  P  +++ + G+ + ID+ Y   D   V   G +Y+ F ++    +E G   +   L   + +  ID A  W   G+ Y F  + Y+R+ + R + D GYP+ I   WKG+ ++  G  I +    TYF+KG  Y++F+++++ VE  YPR I   W  C
Sbjct:  101 LHSAKALQSAVSTMQQFY-GIPVTGVLDQTTIEWMKKPRCGVPD-HPHLSRRRRNKRYALTGQKWRQKHITYS-IHNYTPKVGELDTRKAIRQAFDVWQKVTPLTFEEVPYHEIKSDRKEADIMIFFASGFHGDSSPFDGEGGFLAHAYFP--GPGIGGDTHFDSDEPWTLGNANHDGNDLFLVAVHELGHALGLEHSSDPSAIMAPFYQYMETHNFKLPQDDLQGIQKIYGPPAEPLEPTRPLPTLPVRRIHSPSERKHERQPRPPRPPLGDRPSTPGTKPNICDGNFNTVALFR--GEMFVFKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVT---VEPGYPHSLGELGSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPIT-VWKGIPQAPQGAFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGC 569
The following BLAST results are available for this feature:
BLAST of TCONS_00070408 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MMP249.707e-7232.08Matrix metalloproteinase-24 OS=Homo sapiens GN=MMP... [more]
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