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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070421 ID=TCONS_00070421|Name=TCONS_00070421|organism=Clytia hemisphaerica|type=transcript|length=1027bp
tttaagtttaaccatcattctttcaaaataaacaaaaatcgtttaattct
gataaatctacaagtcaaaatcctcattttaatgatgacctccgttttgg
ggggccgtctccgttttgggggccatatactgtagtcCGAAAACGAGGAG
CTTGAAGTTTTGacttcagttttttttatctacaTCGTAAATTCTATCAA
ACAGCCAAAGTAAATCAAGTTGTAAACAAGGGTTTTTCCTCCACGCAAAC
GATATATAATGAAGTCAATATCAACGGTAGAAAGATCAACAACTGTAAAA
TATGTTCATGTTCCGTGACCATGTACTTGACGAAGAAATAAAACTTGGAT
TGATTTTCTTTACCTTCCAATAATTCATTTCGTTGTAGGCGCTGCTCGAA
TTTCCGCTGCTTTAAATCAGCATATTGGCCGCTCCGACGTCGACCAGTTT
CCGCATACATTTGAAGCATTGTCTGACGAAATTGCTCCTTATAGTCAGGT
TGGCCATCTTCGAAATCATTCTCGTAACTTGTTGAACCATTCGTAAAATA
TGTCGAATTTCGTCGATAACCATACAATTGATAATCGTTTAACTCAACTT
TGAGTTCGTTAGGTGAACTGCTACTTTTTTGTCGAATCATTTTTGGTGAG
CCGTTAGGTGACACTGAGAGCATTTTAGAATTTGGTGATAATAACAAACT
ACTTTTCTTATTACGTCCCACTTGTGGACTAATGTTATTTTTTCTCAAGT
CACTAACAaccatttttttgtcataaagcCTTTTTccttatcaaaataaa
aatacattcaagAGTTTGACACCTTTTCTTATCGTGATACTATTCACTAA
ACTGTCTTTCATATACCCCGCATATTTAAatgttcaaaatatttcttttc
aaatctatGTTTGTCCTATTTTTGTTGATCTCTCAAATTTCTTAAGTGTA
GGTACATGTTAGCTTAACGCTGCTCTGTGCTGCAACTTATTGTCAATACT
TGTTTTTCTGTTTTCAGtcgaaaatgc Run BLAST on NCBI protein sequence of TCONS_00070421-protein >TCONS_00070421-protein ID=TCONS_00070421-protein|Name=TCONS_00070421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MVVSDLRKNNISPQVGRNKKSSLLLSPNSKMLSVSPNGSPKMIRQKSSSS
PNELKVELNDYQLYGYRRNSTYFTNGSTSYENDFEDGQPDYKEQFRQTML
QMYAETGRRRSGQYADLKQRKFEQRLQRNELLEGKENQSKFYFFVKYMVT
EHEHILQLLIFLPLILTSLYIVCVEEKPLFTT Run BLAST on NCBI transcript from alignment at scaffold_55:250491..251517 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070421 ID=TCONS_00070421|Name=TCONS_00070421|organism=Clytia hemisphaerica|type=transcript|length=1027bp|location=Sequence derived from alignment at scaffold_55:250491..251517 (Clytia hemisphaerica)
gcattttcgaCTGAAAACAGAAAAACAAGTATTGACAATAAGTTGCAGCA
CAGAGCAGCGTTAAGCTAACATGTACCTACACTTAAGAAATTTGAGAGAT
CAACAAAAATAGGACAAACatagatttgaaaagaaatattttgaacatTT
AAATATGCGGGGTATATGAAAGACAGTTTAGTGAATAGTATCACGATAAG
AAAAGGTGTCAAACTcttgaatgtatttttattttgataaggAAAAAGgc
tttatgacaaaaaaatggtTGTTAGTGACTTGAGAAAAAATAACATTAGT
CCACAAGTGGGACGTAATAAGAAAAGTAGTTTGTTATTATCACCAAATTC
TAAAATGCTCTCAGTGTCACCTAACGGCTCACCAAAAATGATTCGACAAA
AAAGTAGCAGTTCACCTAACGAACTCAAAGTTGAGTTAAACGATTATCAA
TTGTATGGTTATCGACGAAATTCGACATATTTTACGAATGGTTCAACAAG
TTACGAGAATGATTTCGAAGATGGCCAACCTGACTATAAGGAGCAATTTC
GTCAGACAATGCTTCAAATGTATGCGGAAACTGGTCGACGTCGGAGCGGC
CAATATGCTGATTTAAAGCAGCGGAAATTCGAGCAGCGCCTACAACGAAA
TGAATTATTGGAAGGTAAAGAAAATCAATCCAAGTTTTATTTCTTCGTCA
AGTACATGGTCACGGAACATGAACATATTTTACAGTTGTTGATCTTTCTA
CCGTTGATATTGACTTCATTATATATCGTTTGCGTGGAGGAAAAACCCTT
GTTTACAACTTGATTTACTTTGGCTGTTTGATAGAATTTACGAtgtagat
aaaaaaaactgaagtCAAAACTTCAAGCTCCTCGTTTTCGgactacagta
tatggcccccaaaacggagacggccccccaaaacggaggtcatcattaaa
atgaggattttgacttgtagatttatcagaattaaacgatttttgtttat
tttgaaagaatgatggttaaacttaaa Coding sequence (CDS) from alignment at scaffold_55:250491..251517 >TCONS_00070421 ID=TCONS_00070421|Name=TCONS_00070421|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at scaffold_55:250491..251517 (Clytia hemisphaerica)
atggtTGTTAGTGACTTGAGAAAAAATAACATTAGTCCACAAGTGGGACG
TAATAAGAAAAGTAGTTTGTTATTATCACCAAATTCTAAAATGCTCTCAG
TGTCACCTAACGGCTCACCAAAAATGATTCGACAAAAAAGTAGCAGTTCA
CCTAACGAACTCAAAGTTGAGTTAAACGATTATCAATTGTATGGTTATCG
ACGAAATTCGACATATTTTACGAATGGTTCAACAAGTTACGAGAATGATT
TCGAAGATGGCCAACCTGACTATAAGGAGCAATTTCGTCAGACAATGCTT
CAAATGTATGCGGAAACTGGTCGACGTCGGAGCGGCCAATATGCTGATTT
AAAGCAGCGGAAATTCGAGCAGCGCCTACAACGAAATGAATTATTGGAAG
GTAAAGAAAATCAATCCAAGTTTTATTTCTTCGTCAAGTACATGGTCACG
GAACATGAACATATTTTACAGTTGTTGATCTTTCTACCGTTGATATTGAC
TTCATTATATATCGTTTGCGTGGAGGAAAAACCCTTGTTTACAACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070421-exon-scaffold_55-1491911889:250491..251517 | TCONS_00070421-exon-scaffold_55-1491911889:250491..251517 | Clytia hemisphaerica | exon |
| TCONS_00070421-exon-scaffold_55-1510915933:250491..251517 | TCONS_00070421-exon-scaffold_55-1510915933:250491..251517 | Clytia hemisphaerica | exon |
| TCONS_00070421-exon-scaffold_55-1575043694:250491..251517 | TCONS_00070421-exon-scaffold_55-1575043694:250491..251517 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_55 | supercontig | scaffold_55:250491..251517 . |
Blast
The following BLAST results are available for this feature:
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