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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070423 ID=TCONS_00070423|Name=TCONS_00070423|organism=Clytia hemisphaerica|type=transcript|length=1100bp
TCAGAAACCATGAAGGGGGCTTCGATGCTTGCTATTGGTTACTTTGTAAT
GTCCGTCATTGGAAGTTCGACAAACTCAACCGCCATATATTGCCTTTATA
AGGAAACAGTGAACTTCGCTTCGATAGAGGCTTCGAATATCTTCCTCTTA
TCATTAGCCGTTTCAGACTTGTTGTTGTCTCTAGTGGGATTGTCGAGTAT
GGGCTTCTATCTTGCATCAGTGATTCAGCCGGACCGAATACCAATTATTC
GCTATATAGGCAGCATTTTCTATTCTATCTCATTGTATAACCTAAGTTTA
CTAACTCTTGAGCGCGTCATCAAAATTACGAGGCCAAAGCACCATATCAA
CTGGATGGAGAACAAGAAGATtaccattttgattttaataagtTGTGTAT
TTGAAGGAACGATTCTCCAGTCAACTTCTTTTTACAGTATCGTTGCGTTC
CTTATTATACAAATTGTTCATGTGATCGGGACACTAATAATCCTAATGGT
ATCTTATGCGCTGGTGTATCGAAAACACCGGCAATCGGCAATCATGGTAG
CCTCGTTCCGATCAGCGACAAATGGTACTGGAGCAGATACTTCGGTAAAC
GATCCAGGAAACATGACACATATCAATGGACATGGCGATTCAAAGCGTGG
TGCAGATTGTAGCATTTCTTCTACTGTCGCCTCCACCTCGGCTTCAAAAC
GACTGATCAAAAAAGTGTTGATGTTAATATCAACTCATTTCTTTTTCCTA
ATAACGATCATAATAATCATTATAATAGGAACAGCAATTCCTCATGATGA
AGATATAATCAAACGAGATTTGAAATTCTTCCTTGCAATATTAATTACCT
CGATGAATTCAACATGTATCAACCCGATGATTTACATTTTCCAAGCACAG
AAATTTCGGAAGAGATTGTGCTCTTGTTGTTATCGAAGCAAAAGAGTTGG
CTCCGTTCAACAGAGATGATCGAATAACCTGATACGTCGTGTGGGGAGTG
GATTAGTAGGAATAATTATTGCTGTCCAGAGATGGAGCCTATGATTATCC
TGGTTTCAGAGGAAGCATCTGCTGGTCAGGAGGTCAGACATAAACGTGTT Run BLAST on NCBI protein sequence of TCONS_00070423-protein >TCONS_00070423-protein ID=TCONS_00070423-protein|Name=TCONS_00070423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
SETMKGASMLAIGYFVMSVIGSSTNSTAIYCLYKETVNFASIEASNIFLL
SLAVSDLLLSLVGLSSMGFYLASVIQPDRIPIIRYIGSIFYSISLYNLSL
LTLERVIKITRPKHHINWMENKKITILILISCVFEGTILQSTSFYSIVAF
LIIQIVHVIGTLIILMVSYALVYRKHRQSAIMVASFRSATNGTGADTSVN
DPGNMTHINGHGDSKRGADCSISSTVASTSASKRLIKKVLMLISTHFFFL
ITIIIIIIIGTAIPHDEDIIKRDLKFFLAILITSMNSTCINPMIYIFQAQ
KFRKRLCSCCYRSKRVGSVQQR Run BLAST on NCBI transcript from alignment at scaffold_55:306381..307480 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070423 ID=TCONS_00070423|Name=TCONS_00070423|organism=Clytia hemisphaerica|type=transcript|length=1100bp|location=Sequence derived from alignment at scaffold_55:306381..307480 (Clytia hemisphaerica)
AACACGTTTATGTCTGACCTCCTGACCAGCAGATGCTTCCTCTGAAACCA
GGATAATCATAGGCTCCATCTCTGGACAGCAATAATTATTCCTACTAATC
CACTCCCCACACGACGTATCAGGTTATTCGATCATCTCTGTTGAACGGAG
CCAACTCTTTTGCTTCGATAACAACAAGAGCACAATCTCTTCCGAAATTT
CTGTGCTTGGAAAATGTAAATCATCGGGTTGATACATGTTGAATTCATCG
AGGTAATTAATATTGCAAGGAAGAATTTCAAATCTCGTTTGATTATATCT
TCATCATGAGGAATTGCTGTTCCTATTATAATGATTATTATGATCGTTAT
TAGGAAAAAGAAATGAGTTGATATTAACATCAACACTTTTTTGATCAGTC
GTTTTGAAGCCGAGGTGGAGGCGACAGTAGAAGAAATGCTACAATCTGCA
CCACGCTTTGAATCGCCATGTCCATTGATATGTGTCATGTTTCCTGGATC
GTTTACCGAAGTATCTGCTCCAGTACCATTTGTCGCTGATCGGAACGAGG
CTACCATGATTGCCGATTGCCGGTGTTTTCGATACACCAGCGCATAAGAT
ACCATTAGGATTATTAGTGTCCCGATCACATGAACAATTTGTATAATAAG
GAACGCAACGATACTGTAAAAAGAAGTTGACTGGAGAATCGTTCCTTCAA
ATACACAacttattaaaatcaaaatggtaATCTTCTTGTTCTCCATCCAG
TTGATATGGTGCTTTGGCCTCGTAATTTTGATGACGCGCTCAAGAGTTAG
TAAACTTAGGTTATACAATGAGATAGAATAGAAAATGCTGCCTATATAGC
GAATAATTGGTATTCGGTCCGGCTGAATCACTGATGCAAGATAGAAGCCC
ATACTCGACAATCCCACTAGAGACAACAACAAGTCTGAAACGGCTAATGA
TAAGAGGAAGATATTCGAAGCCTCTATCGAAGCGAAGTTCACTGTTTCCT
TATAAAGGCAATATATGGCGGTTGAGTTTGTCGAACTTCCAATGACGGAC
ATTACAAAGTAACCAATAGCAAGCATCGAAGCCCCCTTCATGGTTTCTGA
Coding sequence (CDS) from alignment at scaffold_55:306381..307480 >TCONS_00070423 ID=TCONS_00070423|Name=TCONS_00070423|organism=Clytia hemisphaerica|type=CDS|length=969bp|location=Sequence derived from alignment at scaffold_55:306381..307480 (Clytia hemisphaerica)
TCATCTCTGTTGAACGGAGCCAACTCTTTTGCTTCGATAACAACAAGAGC
ACAATCTCTTCCGAAATTTCTGTGCTTGGAAAATGTAAATCATCGGGTTG
ATACATGTTGAATTCATCGAGGTAATTAATATTGCAAGGAAGAATTTCAA
ATCTCGTTTGATTATATCTTCATCATGAGGAATTGCTGTTCCTATTATAA
TGATTATTATGATCGTTATTAGGAAAAAGAAATGAGTTGATATTAACATC
AACACTTTTTTGATCAGTCGTTTTGAAGCCGAGGTGGAGGCGACAGTAGA
AGAAATGCTACAATCTGCACCACGCTTTGAATCGCCATGTCCATTGATAT
GTGTCATGTTTCCTGGATCGTTTACCGAAGTATCTGCTCCAGTACCATTT
GTCGCTGATCGGAACGAGGCTACCATGATTGCCGATTGCCGGTGTTTTCG
ATACACCAGCGCATAAGATACCATTAGGATTATTAGTGTCCCGATCACAT
GAACAATTTGTATAATAAGGAACGCAACGATACTGTAAAAAGAAGTTGAC
TGGAGAATCGTTCCTTCAAATACACAacttattaaaatcaaaatggtaAT
CTTCTTGTTCTCCATCCAGTTGATATGGTGCTTTGGCCTCGTAATTTTGA
TGACGCGCTCAAGAGTTAGTAAACTTAGGTTATACAATGAGATAGAATAG
AAAATGCTGCCTATATAGCGAATAATTGGTATTCGGTCCGGCTGAATCAC
TGATGCAAGATAGAAGCCCATACTCGACAATCCCACTAGAGACAACAACA
AGTCTGAAACGGCTAATGATAAGAGGAAGATATTCGAAGCCTCTATCGAA
GCGAAGTTCACTGTTTCCTTATAAAGGCAATATATGGCGGTTGAGTTTGT
CGAACTTCCAATGACGGACATTACAAAGTAACCAATAGCAAGCATCGAAG
CCCCCTTCATGGTTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070423-exon-scaffold_55-1491911889:306381..307480 | TCONS_00070423-exon-scaffold_55-1491911889:306381..307480 | Clytia hemisphaerica | exon |
| TCONS_00070423-exon-scaffold_55-1510915933:306381..307480 | TCONS_00070423-exon-scaffold_55-1510915933:306381..307480 | Clytia hemisphaerica | exon |
| TCONS_00070423-exon-scaffold_55-1575043694:306381..307480 | TCONS_00070423-exon-scaffold_55-1575043694:306381..307480 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_55 | supercontig | scaffold_55:306381..307480 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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