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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070429 ID=TCONS_00070429|Name=TCONS_00070429|organism=Clytia hemisphaerica|type=transcript|length=1332bp
GCTATCGAATGATGATGCTGTCTGTATCAATCAAATTATGGATGAGAAGG
CTTCAAACCTACGTAAGATGGACAAACTCTTGGCCGTTTTGCGAGAACTC
TCTGACAGAAAtcaaaaattggataaaaagcTGGATTCAGTGTCAGTGAA
ATATTCGTTACCGAAGCAGAAAGTGTCTACCGACCTCAAGTATGGTTTAA
CGGAATCACAAAGCAAAGTCACGCTGCAAGCCCTATCAAATGAATCTGAG
ATGGATAACGAGACAGCCACATATATTGTTACAGGGGAACAAGttatGTT
ATCTTCTGAAACAAACCTTCAGTGTTTCTCTGGTAAAGAAGATCTCGCAA
ATCATATTGAAATGAACGAGAACCAAGATCTCCATAATCAGGGTGGAGTA
CAAGTGGACCCAATTTCAAAGCTTGGTTTTGAATCTGGGGTCCAATCTGA
TGACTGCTCTACGCTTCAACCATCAAACATGGCGCTATTGTCTTCAACTG
CTCCAACCGGCTTGCCAACTGTTATAAACTCATCTTCGCCTTCGTTGAAC
CACAAGAATGATCCATCGAAAAGTCCTCAAACCCGTCAAGCTATTAAGAG
GCATTCACAGGGAGATGGTGGCCCtgaaaacaaacgaaaaaataTTACGG
GACCTGCTTTTGTTGGAGTTGGTAAAACTAAAAGGAACATGGCAGAGAAT
ACAAAACCTGAGAAAGAACTCGTTGATCAAGGTGTTGCCTATTTATCCTT
ACTGGATTTTCAGAGTGACCCACCTAACGATTGACTTAAACAACTTGATG
ATGCTTACACTAAAGATGAGTTTTATGACGGAAACTGGTGATTGANCGAT
TGACTTAAACAACTTCATGATGCTTACACTAAAGATGAGTTTTATGACGG
AAACTGGTTTTTTGTACGGGTTCAATCGTCTTTGTTACTGCTAGTTTGTT
GGAGCACCTTGATTACCTCTCCGAAAGAATTAACACCATAATTATTTaat
tgatttaaatttttgtttttgcacGATGTATCATTcatagattttttcat
tttcctactctttttattaaaattttaagaattttattttgtttataatC
CAGCAGAATTTGTATTTTTACCATAATCACGGCTTTTATATAccatttta
gactttcattttaACTGCTGAAAATACTGATCTATTCACTAGGTTTTTTA
TTCCCTTTTTTCATAtacttttgatttcaaattatttttttgaaaatcca
ttcatttaagaaaaagtgaaaattctaACCAAATCTAGGAAAACGAAACA
TTATACCCTAAATATGTAAAcattttgtaaga Run BLAST on NCBI transcript from alignment at scaffold_56:33968..42758+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070429 ID=TCONS_00070429|Name=TCONS_00070429|organism=Clytia hemisphaerica|type=transcript|length=8791bp|location=Sequence derived from alignment at scaffold_56:33968..42758+ (Clytia hemisphaerica)
GCTATCGAATGATGATGCTGTCTGTAGTAAGTCTTTAGCGAGTTTTTGTC
ATTCTCAACTGAAAAAAAACGTCCATCTAGCGTCTTAACATTACACAATG
TAATGTAAAATaacaagaacaatttcataagaacacgaggctgaaagcTG
ACCAAAACctgagaacaaattaagaacaatatgAATCTCTGTTACATTAC
GACGTATCTAATCATCTCGCTgcaatttttgcaaattttgagctatcatc
aTGCTTCAAATTTGCTTGGCGTGTTCCAAAGTTACGCAGAAAAGtcgaaa
aaattatatttcgaaAATAcgtcatttttgagaaaaaaagtgtGAAGCAG
CCGGTAGAATAATATTAAAATGacggttttgtgcttgttgaaaagataat
aagGAGTGCGTTATGAAAcagataaagtttacaaaatgaAGATGGAAAAT
GAAGACGAAAAATATCAATTATCCTTTAATCGTCTTCTGTGTTGTTTTAG
AGCCTCAAAATGGCAATGAAACAAGCAGTTGATCTTCAAACTATCATTTT
TTTCACTAGTCAATCAAATTATGGATGAGAAGGCTTCAAACCTACGTAAG
ATGGACAAACTCTTGGCCGTTTTGCGAGAACTCTCTGACAGAAAtcaaaa
attggataaaaagcTGGATTCAGTGTCAGTGAAATATTCGTTACCGAAGC
AGAAAGTGTCTACCGACCTCAAGTATGGTTTAACGGAATCACAAAGCAAA
GTCACGCTGCAAGCCCTATCAAATGAATCTGAGATGGATAACGAGACAGC
CACATATATTGTTACAGGGGAACAAGGTACTCTTCAAGCATTGAATTTTG
CTAAGCTAGGTATAcactaggctacgtcatatcttcatATTTCtcgtttt
gaatattgaatttctcACTTTACATTGCATACGCACTGAGGTTtcaatga
aacaatagagagtttcgaaagcTAAGTCAATTAGCTGTGTTTTAAACTTC
TTTCAAATTATacctctattgataaacatcttttgttaaaaacttcCGTT
ACGTTTAGGCGAATcctgggggtcactagtggccgcctatagtaGTGCCT
ATAAACCAAGAGTAATgtctaaaagcctggagctgtctatcaTGTAGACT
ATTAAGTATACACCCTGAAAAAAAGGTTTATCGTGAATTTGTTTTTCGTG
GATAATTCTGTTTGGAATTAGAAATCCATTGTTGTATTTGCGATAGAGCG
AAAAAAAATTAGCGATGAGAAATTAAAACGTTTTCATCTATCAAATTATA
GTAAATAAAAATAGTAAATGGTATGAATTATTCAAGTTTTCGATAGTGTT
TGTGTTTGTATATTTTAACTAACTGCAGAgtcttgaaagaaaaatattat
ttattttattggcTTTAATAAGCTTATCTTCCCATGCCTCGATGTACAAA
GAGACGGACTCGTAGTATACTAGTGATTTTGTCAAAGAGTGAAACTTTTT
AGGACACTAGAATGTAAACTAACAGAAAGAActttgaattttcagttatG
TTATCTTCTGAAACAAACCTTCAGTGTTTCTCTGGTAAAGAAGATCTCGC
AAATCATATTGAAATGAACGAGAACCAAGATCTCCATAATCAGGGTGGAG
TACAAGTGGACCCAATTTCAAAGCTTGGTTTTGAATCTGGGGTCCAATCT
GATGACTGCTCTACGCTTCAACCATCAAACATGGCGCTATTGTCTTCAAC
TGCTCCAACCGGCTTGCCAACTGTTATAAACTCATCTTCGCCTTCGTTGA
ACCACAAGAATGATCCATCGAAAAGTCCTCAAACCCGTCAAGGTTAGTCA
TTTGTATGTGTGTTGGAAAATATTATTCTTATCTTCATCAGATTAAcatt
gatttgtttttctttaaaacataGTCGTGAGGGAACTTTCGGATGAACAC
CAAACGTTTGCAATTGATAAGGGAAATCCAACATGAATTCAAAATTCTTA
TTCTTTCTTGGGCAATCTGTGAGGTCATAATCGAagttctttttggacct
acctccggttaccccggtggaggtcctataaattaactgttgtccgttcg
ttcgtctgttaccagcttttctcgagattggctcattagtttttttctga
tttttggcacaaagatgcaaaatggcaatggccaaaatgtgacggagcca
gattttcgaaaaaaatatgccggaaaaaactgttttttttttggcatttt
atcgagattttatcattagttttttctgattttttgctccaAGATGTGTA
TTAacatagactatgctatagtctaagacgagtttcatctaaaaaaagaa
caaacgtGAAGAGGGGAATCTTTTTACGGGAGTGGccgttgtcttagact
atatcaaTTTGGTCGAAAAgcggaaattttggattttggttagCGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNtgtaaatggtttgttttgaatt
tatttttaacaagcagaactcagattcaagcaagtatcatatatattttt
tcaagaataaaaGAGAGAAGAGGTAAGCAGTACGgctcttttcttttatt
ttgaaagactaATCCTTTTGTAACACTCTCCAGTGTATGCAGATTATTTT
GTCTGATTGCTCATTGGAAAATTTTATTAGAGCCGCATTTTTCAATCACA
GCTTTTTTGCAAGTTTTACAAGTGTACGTGtgatgcattatttttcttta
tcaaaatttttttaatttgtcattttCTTACAGGCCGCGAGCTAACGAAA
AAAGAGGATCAGTGtggtttgcaaaaaaagaatgaatcatACTCATATAT
AAAAAATGATATTGTAAATAATTATACCCGTGAAAACATCTGCAGTCTAT
ACACAGCAAAAATCAGTAATTATACCAAACTTGTGAAATTAAAGGTTATT
GGTGAATtgcagttttattgaaaaacttaagaaagcttttaaaattttga
ataaagctgTAGTCTACTAGTCACTATACTACTAGTCACAcatagcaaat
tttttttgaatcacCATGATATTTTGGGTGAATTTACcagatttcatttt
cacaatTGTAACTTTTTAAAGTGAATTATATGTGAGTTCATCCGAAAATC
AAGGTATatacttttttagatttttcctgTGTGAATGATAagcattgatt
ttgattttttaaattttaagtgcGGTCGGGGCCGTAAAACAACATATCAA
ATTGGTCCCACCTTATGGTCTTCCAAAACTTTTCAAGTCCAACacagaaa
aaattcaatgtaaatcATTGCATGACTTTTTAGTGGATTCgcggtgaaaa
gctgcaattaaTAATTCACGATGAAAAGGTAAATTTCACCGAGAATTGTT
GTcagattgcagcttttcaccgtgaattcaCTNGCAACCATTCCTAGCAA
GGTAGTCATtaagaaaagatttttctttatttatctTCTTATTGACTGCT
ATATGTTAGTAATAGTTGCTATTCTGCCCTACTATATTCAAGATGGGCAT
TATATAAGGACATTgtattcaatatttatttttgtcatGCAAAAATCAAT
GTTGTATGAAATTTCTATCACATTTttggttatcttttttttcaattttg
aataaatcaattcatttttacgTGTTATTTTATGGGTATGCCACTTGGAT
CATGTAAAAGGatatttgagtaaagaaatttattttcactAGGTATTTTT
TGCAAAGCATTCGGTTTGCAGTCAAAAACGCCTTCTCGGCCTTaggtcta
aaattgaaaatttgaaccacagattttttggggaatttttttttaNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtaaacac
agactctatccgccgcgaaacatattacgttttataatatacaaactatg
ttatatcataataatatattatacggacgatagcatcgtctagtattaac
aatgcccaaaacatggacAAGTCCGATTTTAAGAAGAATTTTTCTGgacg
aaaatgccggaaatatgccggaaatcgtcgtttttctgggttttcattgg
actttttccttttataattggttgtttttttatgaaattttgcacactga
tgcaaaatgacaataccctaaaatgtggcggagcccgattttcgaaaaac
atttttttccggtcgaaaatgctgGGAATATGcaggaaaaaccggttttt
tgacattttttcgaattttcatcctcattcttttctgatttttttgaaga
aagatgcgtatttcaatgctcaaaacatggccaagttcgatttttgagaa
aacattttttccggttgaaaataccggaaatcgccgtttttgcagatttt
cattggattttttccttatatttctatgtttttcacacaaaaacattatt
gataacaatgttcaccatcaagcatgattcaattgtcaataaaactgatt
tttgcgaccagaaatttttttcttccctacaacccttccctctcccccca
tcaacaatcaatgatgaatttattgcgttatgcatttttgctaaacgcta
tattttctgactgatttcttttcatttttctcctcgcattgctatctaac
tttcatcatcaggtaggtccattcagcatctagcttgtttttttttcaaa
tatgaagaatttgaaatattttcatcaCCAAAGTACATTTTTCGAATTGG
ACTAAGAAAAGAATTTTCGTTACAAATCTCTTTTTTCTAGCTATTAAGAG
GCATTCACAGGGAGATGGTGGCCCtgaaaacaaacgaaaaaataTTACGG
GACCTGCTTTTGTTGGAGTTGGTAAAACTAAAAGGAACATGGCAGAGAAT
ACAAAACCTGAGAAAGAACTCGTTGATCAAGGTGTTGCCTATTTATCCTT
ACTGGGTTAGTATGTTTCTTTTctcacttttcattttttatttgatgtaA
AAGTACCGAAAAAGTACTACCAATTCGCCGTCTCTGCCCAGTCAAtagac
aagaattcacttccagcTCTACTGGGTGGCATGATGACCGTTGCTACGAC
CGTatcatgaaggtagagcatccagctacggtgcgcaagtttgtaggttc
gatccccagccgggtcataccaaagattcccaaaatgtaccatgcctctc
tgcttgatgctcagccaCTAAAGAGACGGgccaagggtaagtggagaaat
taatggaaaggagtggcgccctcccctaccttcgggtagacagctatacg
aaaagggatccttcgggtcgccctcgactgcagTCGCAAACTTACTAACT
TACTCACAACCCGGTTGCAGTTGAGTCCTCGGGCTCCACATGAACCCGTG
gctcaatggtagagcaaatgccTGCGAATTGCATGGTTGTGAGTGcgagt
ctcgccggatccgttggttaTCCAACAGTTCTGGTGGCTAGTCAGAAGAC
AACACGAAAGTGACTATACTCACTTCATTATTATAAAAGTGTGGTGAAAA
TTAGTAAGAAAACCGACCTTCATATACCCTGGACACATTTTCCCGATCCT
GGCCAAGCAGAATCTTTgattgaagttttttgaaagtgcGGTACCCTGAT
ACCCTGATTTGCCGTCATCTTCAGTTGATTAAGATCTCGTAAACAAATCA
AAAGCGGACAGTTATCTTCGCATTAAAAAACACCGATACATACACTCGCC
ACTAACACAGTCTCACCGTGCTTTAATGGTTTGACGGAAGTAAAACCTGA
TAAAATGTGGAACTGATGAACTGACTAAAAGTCACGTCATAAGTCCAAAT
GCTAGGTTTTTAATAATCACCATGTTCAGTTCGGTTCAGTAGTTCTTTAT
CGCAAATTGCTAGTGTTAAAAACTAAATCGAGGGCACATTTATCTATACA
TTTAAAACCATTGAGGACACTCTCATTGCCATCTAATTCATGATATCCAT
GCCGTAacgttttctacggaaagaccccggttttagTAAGTAGtgccaaa
tttaaactagacaaaagttgtataaaatttgccactactggcaaaaaccg
gggtctttccgtagaaaacattacgtcatgaatatcatgaataacttCTT
AAAGTATAATTTAGATTTTCAGAGTGACCCACCTAACGATTGACTTAAAC
AACTTGATGATGCTTACACTAAAGATGAGTTTTATGACGGAAACTGGTGA
TTGANCGATTGACTTAAACAACTTCATGATGCTTACACTAAAGATGAGTT
TTATGACGGAAACTGGTTTTTTGTACGGGTTCAATCGTCTTTGTTACTGC
TAGTTTGTTGGAGCACCTTGATTACCTCTCCGAAAGAATTAACACCATAA
TTATTTaattgatttaaatttttgtttttgcacGATGTATCATTcataga
ttttttcattttcctactctttttattaaaattttaagaattttattttg
tttataatCCAGCAGAATTTGTATTTTTACCATAATCACGGCTTTTATAT
AccattttagactttcattttaACTGCTGAAAATACTGATCTATTCACTA
GGTTTTTTATTCCCTTTTTTCATAtacttttgatttcaaattattttttt
gaaaatccattcatttaagaaaaagtgaaaattctaACCAAATCTAGGAA
AACGAAACATTATACCCTAAATATGTAAAcattttgtaaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070429-exon-scaffold_56-1491911889:33968..33993 | TCONS_00070429-exon-scaffold_56-1491911889:33968..33993 | Clytia hemisphaerica | exon |
| TCONS_00070429-exon-scaffold_56-1510915933:33968..33993 | TCONS_00070429-exon-scaffold_56-1510915933:33968..33993 | Clytia hemisphaerica | exon |
| TCONS_00070429-exon-scaffold_56-1575043694:33968..33993 | TCONS_00070429-exon-scaffold_56-1575043694:33968..33993 | Clytia hemisphaerica | exon |
| TCONS_00070429-exon-scaffold_56-1491911889:34527..34793 | TCONS_00070429-exon-scaffold_56-1491911889:34527..34793 | Clytia hemisphaerica | exon |
| TCONS_00070429-exon-scaffold_56-1510915933:34527..34793 | TCONS_00070429-exon-scaffold_56-1510915933:34527..34793 | Clytia hemisphaerica | exon |
| TCONS_00070429-exon-scaffold_56-1575043694:34527..34793 | TCONS_00070429-exon-scaffold_56-1575043694:34527..34793 | Clytia hemisphaerica | exon |
| TCONS_00070429-exon-scaffold_56-1491911889:35513..35809 | TCONS_00070429-exon-scaffold_56-1491911889:35513..35809 | Clytia hemisphaerica | exon |
| TCONS_00070429-exon-scaffold_56-1510915933:35513..35809 | TCONS_00070429-exon-scaffold_56-1510915933:35513..35809 | Clytia hemisphaerica | exon |
| TCONS_00070429-exon-scaffold_56-1575043694:35513..35809 | TCONS_00070429-exon-scaffold_56-1575043694:35513..35809 | Clytia hemisphaerica | exon |
| TCONS_00070429-exon-scaffold_56-1491911889:40808..40972 | TCONS_00070429-exon-scaffold_56-1491911889:40808..40972 | Clytia hemisphaerica | exon |
| TCONS_00070429-exon-scaffold_56-1510915933:40808..40972 | TCONS_00070429-exon-scaffold_56-1510915933:40808..40972 | Clytia hemisphaerica | exon |
| TCONS_00070429-exon-scaffold_56-1575043694:40808..40972 | TCONS_00070429-exon-scaffold_56-1575043694:40808..40972 | Clytia hemisphaerica | exon |
| TCONS_00070429-exon-scaffold_56-1491911889:42182..42758 | TCONS_00070429-exon-scaffold_56-1491911889:42182..42758 | Clytia hemisphaerica | exon |
| TCONS_00070429-exon-scaffold_56-1510915933:42182..42758 | TCONS_00070429-exon-scaffold_56-1510915933:42182..42758 | Clytia hemisphaerica | exon |
| TCONS_00070429-exon-scaffold_56-1575043694:42182..42758 | TCONS_00070429-exon-scaffold_56-1575043694:42182..42758 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:33968..42758 + |
Blast
The following BLAST results are available for this feature:
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