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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070442 ID=TCONS_00070442|Name=TCONS_00070442|organism=Clytia hemisphaerica|type=transcript|length=908bp
GTACAGGCGAAGGCAAGAATGATCTTGTGTGGCTTTGAGTATCTTTTAAG
CACGTTTAAGCACTCGAATCATTATTAGAAGCCTTGGCATCTTTTGCATC
GACTAATCTGTAAGTGAATCGGAAGGTGATACGGAATTAGTAATACGGTC
AGgtgaaattctatcaaaaaagatttctagGAACAGCTTCGGCAAGTTTT
GTTTGAGACtttcgaagaaaaaattttctttgaaaNTTTCTAGGAACAGC
TTCGGCAAATTTTGTTTGAGACtttcgaagaaaaaattttctttgaaagt
gaaaatcgtaagtaaagaagaaaaagatgaagaagaaaactaaCTAACCG
ATATTTGTTTTTagattataaaaacattcaagctGTGTGGATAGAGTTGA
TATAATGGAGTACTGAGTACTGTCGTTAAGAAATTGCACGCAAGCCATCC
AATATATAGTCGGGTCAATATATTTTAGTGATGAcgatttaatttgattt
tcaatgacTCAAGATTTATTTCAAACAGTTcagtttcttacaaaaaatac
gAAATATTAATTAAGTTTTTCTTATCGGGGGTGTAAAAGATTTGTTTATT
AAAGTGATCTCAAGACTCGAATCACTTCAAAAAACGGAAAAAGGGAATTC
ATAATTAATGTTCCCTTCTGATTGGTTTAAATGATAAATCACTTAGGAGT
GAGAAAAAACTTTCGATACTTTGTAGTCTAATTTTAGGACGTCTTGAGAA
TAGGTtaatattatctttttttaaagaaacataTAACTTTTCACAACCAA
TTTCGATTTATCTTCGTTCTGGAGATACTGGATTGAACACCTTACGGAAA
AGAGGTTTTCACAAAACAAGATTTTGAAGATTCAAAATGCAAGGTTCACT
ACAATGGG Run BLAST on NCBI transcript from alignment at scaffold_56:326779..328512+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070442 ID=TCONS_00070442|Name=TCONS_00070442|organism=Clytia hemisphaerica|type=transcript|length=1734bp|location=Sequence derived from alignment at scaffold_56:326779..328512+ (Clytia hemisphaerica)
GTACAGGCGAAGGCAAGAATGATCTTGTGTGGCTTTGAGTATCTTTTAAG
CACGTTTAAGCACTCGAATCATTATTAGAAGCCTTGGCATCTTTTGCATC
GACTAATCTGTAAGTGAATCGGAAGGTGATACGGAATTAGTAATACGGTC
AGgtgaaattctatcaaaaaagatttctagGAACAGCTTCGGCAAGTTTT
GTTTGAGACtttcgaagaaaaaattttctttgaaaNTTTCTAGGAACAGC
TTCGGCAAATTTTGTTTGAGACtttcgaagaaaaaattttctttgaaagt
gaaaatcgtaagtaaagaagaaaaagatgaagaagaaaactaaCTAACCG
ATATTTGTTTTTagattataaaaacattcaagctGTGTGGATAGAGTTGA
TATAATGGAGTACTGAGTACTGTCGTTAAGAAATTGCACGCAAGCCATCC
AATATATAGTCGGGTCAATATATTTTAGTGATGAcgatttaatttgattt
tcaatgacTCAAGATTTATTTCAAACAGTTcagtttcttacaaaaaatac
gAAATATTAATTAAGTTTTTCTTATCGGGGGTGTAAAAGATTTGTTTATT
AAAGTGATCTCAAGACTCGAATCACTTCAAAAAACGGAAAAAGGGAATTC
ATAATTAATGTTCCCTTCTGATTGGTTTAAATGATAAATCACTTAGGAGT
GAGAAAAAACTTTCGATACTTTGTAGTCTAATTTTAGGACGTCTTGAGAA
TAGGTtaatattatctttttttaaagaaacataTAACTTTTCACAACCAA
TTTCGATTTATCTTCGTTCTGGAGATACTGGATTGAACACCTTACGGAAA
AGAGGTTTTCACAAAACAAGGTATGTTCAACAAATCAACGAATGAAAAAT
AGTCTTACAAGtattttttcgttttaaagACCATGTTCTTTTTAACCACA
TATCtataattataaaaaacgtataattataaaaatattagtcccttttt
atgtttcatcttgattttatttagtattttcaacactttctctccttgat
atcagatctctgatcttcaccgtAAATACAATCTGTGCCGAAAtataatt
ggcaattttgggtattttaacgttttctaGAATCtaaagctcgggcgaga
attgtACTTCAACTTTGTTCCAGTGAATTTCTCGACTTGGGAGGGATTAA
ttggcttccaggctatgttCTCAGCTATATTGgaacattttgagctttta
gatcctgagatcctaagctctaatgttaaaactagagttaaaactctact
ttctaaccgtactttaaagcacttaaaatcacttgcggttttaaagtttt
aaatgaATTCCTCTTTTGGGCCAAATTtttcggcgctgattgtagCTGTC
TTGAAGCAGAACTATCTATGTACAAGATCTATGATAGAGACTCAATCTAG
TTTTACCAATTAGACAAACCAAACAGACTTCTTTGTTGGAGATATCAagt
tattaattttttatctgaGGAAGGGCTGACCTTATTTATGATGATCCTTA
GGATTGTTTCAAAGTAAACTACTATCttgtgtattttcaaaggaattaAG
GCGGATTTAAGGGGGAAATATCGAGGGAAGTACTCGAATGAAATCGAGTT
CTAATGCTGCTGTAATGACTTTCGTTTCTCATTTTGTTTTGTCCAGATTT
TGAAGATTCAAAATGCAAGGTTCACTACAATGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070442-exon-scaffold_56-1491911889:326779..327648 | TCONS_00070442-exon-scaffold_56-1491911889:326779..327648 | Clytia hemisphaerica | exon |
| TCONS_00070442-exon-scaffold_56-1510915933:326779..327648 | TCONS_00070442-exon-scaffold_56-1510915933:326779..327648 | Clytia hemisphaerica | exon |
| TCONS_00070442-exon-scaffold_56-1575043694:326779..327648 | TCONS_00070442-exon-scaffold_56-1575043694:326779..327648 | Clytia hemisphaerica | exon |
| TCONS_00070442-exon-scaffold_56-1491911889:328475..328512 | TCONS_00070442-exon-scaffold_56-1491911889:328475..328512 | Clytia hemisphaerica | exon |
| TCONS_00070442-exon-scaffold_56-1510915933:328475..328512 | TCONS_00070442-exon-scaffold_56-1510915933:328475..328512 | Clytia hemisphaerica | exon |
| TCONS_00070442-exon-scaffold_56-1575043694:328475..328512 | TCONS_00070442-exon-scaffold_56-1575043694:328475..328512 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:326779..328512 + |
Blast
The following BLAST results are available for this feature:
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