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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070443 ID=TCONS_00070443|Name=TCONS_00070443|organism=Clytia hemisphaerica|type=transcript|length=862bp
GGCGAAGGCAAGAATGATCTTGTGTGGCTTTGAGTATCTTTTAAGCACGT
TTAAGCACTCGAATCATTATTAGAAGCCTTGGCATCTTTTGCATCGACTA
ATCTaaacataTAACTTTTCACAACCAATTTCGATTTATCTTCGTTCTGG
AGATACTGGATTGAACACCTTACGGAAAAGAGGTTTTCACAAAACAAGGT
ATGTTCAACAAATCAACGAATGAAAAATAGTCTTACAAGtattttttcgt
tttaaagACCATGTTCTTTTTAACCACATATCtataattataaaaaacgt
ataattataaaaatattagtccctttttatgtttcatcttgattttattt
agtattttcaacactttctctccttgatatcagatctctgatcttcaccg
tAAATACAATCTGTGCCGAAAtataattggcaattttgggtattttaacg
ttttctaGAATCtaaagctcgggcgagaattgtACTTCAACTTTGTTCCA
GTGAATTTCTCGACTTGGGAGGGATTAAttggcttccaggctatgttCTC
AGCTATATTGgaacattttgagcttttagatcctgagatcctaagctcta
atgttaaaactagagttaaaactctactttctaaccgtactttaaagcac
ttaaaatcacttgcggttttaaagttttaaatgaATTCCTCTTTTGGGCC
AAATTtttcggcgctgattgtagCTGTCTTGAAGCAGAACTATCTATGTA
CAAGATCTATGATAGAGACTCAATCTAGTTTTACCAATTAGACAAACCAA
ACAGACTTCTTTGTTGGAGATATCAagttattaattttttatctgaGGAA
GGGCTGACCTTA Run BLAST on NCBI transcript from alignment at scaffold_56:326784..328312+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070443 ID=TCONS_00070443|Name=TCONS_00070443|organism=Clytia hemisphaerica|type=transcript|length=1529bp|location=Sequence derived from alignment at scaffold_56:326784..328312+ (Clytia hemisphaerica)
GGCGAAGGCAAGAATGATCTTGTGTGGCTTTGAGTATCTTTTAAGCACGT
TTAAGCACTCGAATCATTATTAGAAGCCTTGGCATCTTTTGCATCGACTA
ATCTGTAAGTGAATCGGAAGGTGATACGGAATTAGTAATACGGTCAGgtg
aaattctatcaaaaaagatttctagGAACAGCTTCGGCAAGTTTTGTTTG
AGACtttcgaagaaaaaattttctttgaaaNTTTCTAGGAACAGCTTCGG
CAAATTTTGTTTGAGACtttcgaagaaaaaattttctttgaaagtgaaaa
tcgtaagtaaagaagaaaaagatgaagaagaaaactaaCTAACCGATATT
TGTTTTTagattataaaaacattcaagctGTGTGGATAGAGTTGATATAA
TGGAGTACTGAGTACTGTCGTTAAGAAATTGCACGCAAGCCATCCAATAT
ATAGTCGGGTCAATATATTTTAGTGATGAcgatttaatttgattttcaat
gacTCAAGATTTATTTCAAACAGTTcagtttcttacaaaaaatacgAAAT
ATTAATTAAGTTTTTCTTATCGGGGGTGTAAAAGATTTGTTTATTAAAGT
GATCTCAAGACTCGAATCACTTCAAAAAACGGAAAAAGGGAATTCATAAT
TAATGTTCCCTTCTGATTGGTTTAAATGATAAATCACTTAGGAGTGAGAA
AAAACTTTCGATACTTTGTAGTCTAATTTTAGGACGTCTTGAGAATAGGT
taatattatctttttttaaagaaacataTAACTTTTCACAACCAATTTCG
ATTTATCTTCGTTCTGGAGATACTGGATTGAACACCTTACGGAAAAGAGG
TTTTCACAAAACAAGGTATGTTCAACAAATCAACGAATGAAAAATAGTCT
TACAAGtattttttcgttttaaagACCATGTTCTTTTTAACCACATATCt
ataattataaaaaacgtataattataaaaatattagtccctttttatgtt
tcatcttgattttatttagtattttcaacactttctctccttgatatcag
atctctgatcttcaccgtAAATACAATCTGTGCCGAAAtataattggcaa
ttttgggtattttaacgttttctaGAATCtaaagctcgggcgagaattgt
ACTTCAACTTTGTTCCAGTGAATTTCTCGACTTGGGAGGGATTAAttggc
ttccaggctatgttCTCAGCTATATTGgaacattttgagcttttagatcc
tgagatcctaagctctaatgttaaaactagagttaaaactctactttcta
accgtactttaaagcacttaaaatcacttgcggttttaaagttttaaatg
aATTCCTCTTTTGGGCCAAATTtttcggcgctgattgtagCTGTCTTGAA
GCAGAACTATCTATGTACAAGATCTATGATAGAGACTCAATCTAGTTTTA
CCAATTAGACAAACCAAACAGACTTCTTTGTTGGAGATATCAagttatta
attttttatctgaGGAAGGGCTGACCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070443-exon-scaffold_56-1491911889:326784..326887 | TCONS_00070443-exon-scaffold_56-1491911889:326784..326887 | Clytia hemisphaerica | exon |
| TCONS_00070443-exon-scaffold_56-1510915933:326784..326887 | TCONS_00070443-exon-scaffold_56-1510915933:326784..326887 | Clytia hemisphaerica | exon |
| TCONS_00070443-exon-scaffold_56-1575043694:326784..326887 | TCONS_00070443-exon-scaffold_56-1575043694:326784..326887 | Clytia hemisphaerica | exon |
| TCONS_00070443-exon-scaffold_56-1491911889:327555..328312 | TCONS_00070443-exon-scaffold_56-1491911889:327555..328312 | Clytia hemisphaerica | exon |
| TCONS_00070443-exon-scaffold_56-1510915933:327555..328312 | TCONS_00070443-exon-scaffold_56-1510915933:327555..328312 | Clytia hemisphaerica | exon |
| TCONS_00070443-exon-scaffold_56-1575043694:327555..328312 | TCONS_00070443-exon-scaffold_56-1575043694:327555..328312 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:326784..328312 + |
Blast
The following BLAST results are available for this feature:
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