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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070470 ID=TCONS_00070470|Name=TCONS_00070470|organism=Clytia hemisphaerica|type=transcript|length=2830bp
TCGTGtgcaaaaagtagaaaatattAAGAGAAGAGAAAAAGCAGTTGtct
tgtgttttgttttgttttgaaagcgAGAGATGGCGAACATTGAGCAGAAA
TTACGGTTGTTGCAACCAAAACCAATCGACCCTTCAAAATGTGATCCAAA
TAAATCTTTGTACTGGCAGATCATCGACAACAATCAAACTGCATTGAATC
GTCAAGCCAAACAATTTAATTTGGGAAACACCCTCAAGTTTAATGACCCG
ATCAAAGCTGCCATGTTTCTCCTTCAAAGAGAGTACGGTGATTCTTCTCT
TTTCAAGAAAGATGTACATGAAGCTGTCTTTATACCTCCAACGTTTGTTT
CCAATCAATACATGAAAAAGTCACCTGTAGCTATTCTTGAGTATGAAGTC
AAGAAAGATATTGATAGACTTTTGGACAATTTGAAAGAACATTCACCTGA
TTACTGGTTGACAAAAGAATTACAAACCTTCCTGCAAACACAAAATGGTG
ATGATGATTGTATCGATAAGAAGGCGTTCGATCAATGGATAGTGAACCTG
AAAATCATGTATTTAGTTATCGAGGATCAAAAAACAGATAAGGTGACTTT
ACCGTCAACAACGTCAGACATTGGTGTTTTTGTTCAAGCTTGCATCAATG
ATCTTCCGTCGACACCACCAAAAATAGCATTAAAAACCTTTCTGAGAGAG
TCTGTTATAAAAAAGGGCTTCAAAAAGCTGCTTAAACAGAAGATCGAGGA
TAATCCACCACAAGATANCAAAAAAGGACTTCAAAAAGCTGCTTAAACAG
AAGATCGAGGATAATCCACCCCAAGATTCAAACCTTCGATGGCTTTTTGA
ATTAGAATTGACAGAGCTGGGTGAACAAATTGAACATTGGTTTTATGATC
AGTTATTGCCGCTTAAAGATGACACTCTTCAGGACACAGTTGTTCTTTCA
TCTGTCAATTTCTTAACAGacgttaaaaagaaaagaaatcggGAATCAGA
CCTATTGATCATCTCGTGGCAAAGACAACTCATCATTTCTGTCGAGatcc
cagacggcacacaacgtcaaaacaacgtccatgtgacattcataacgtcc
aaataacgttatttgaacgttaaaacaacgtccatgtgacattcataacg
tccaaataacgttatttgaacgttaaaacaacgttgtgtgccagctggga
tgaaACGCGAGCTCAGCACTGATCGAGTGTTTCAACAATTGGATTCGAAC
CATCAATTATTCGAGCAAAGATTGGGAGATCAATTTGAATCTGGATGGAC
CTTCTTCCCCGTTGTCTGTGTCCAAAACAGTTCCATTTCAAACGCTAGCC
CACATTTCATCATCATGGGGACTGATATAAAGTCATGGTTAACGAGTATC
CTTGGTAATTTTCCGATCGTTCAAATTGCTCATAGACCAACTCCACTCGA
TCAAGttcaaaagcttttaaaaattGTTGTGTTTTCGATTCACGTTTCAA
AGAAGGACCTCGTTGCACCCATAACCAGTTCAAACTGGGTGAAGTATATC
GCAGACGCCATCGAAAATGTTTCAACAAGCGACAATATTCTATTTTATTC
CACTCAACAGATGGCAGCACTGAATAGCAACGATGCTTGCTATAACAAAT
TGATGATTCTTGGCCCATTTGGTGTGGGAAAAAGCATCTTATTAAGGGAC
AAATCCATCCAACTAAACGAACAGCCAGGATACAAAGGGAAAGTGATGTA
TCTGTTAGGTTTTACACCTGGTAAAAAGTACCACAGTTTATTGTGTTTCC
GTTTGATGGTCGATTTGGAAGAGAAGCACGAATCAAAGTGGTGGAAATTG
AAAGCGGACCGAAAGACGACCAAGAGGATCAGGATAAACTTTTTGAACAA
ATCAAGCAAGATGGCATCAAAGCTGTGTTCTGTGATGAGTTTGACTTGGA
TTACAAAGAAGGTTTGGTGAGAAAGGTTTCCGAGATTGTTGAATACCTAT
GGGTCGTCCCATCAACTCAAGATTTAAGCAATGCAAAGTTGGAAAAATGG
GAAGATGAATTCACCTTTCTCAATCTCGAACAGAACTTTCGTAATGCACG
AGAGATTGTGAGAATGACGAAGTCTGTTAGTGAGGAGAAGCAATACAATT
ATAAGAACGGTATCGTTTTGCCTCCTGAAAACTTCCCTTCCGGATGTACA
CCGATACTAGTGGATACTTTCGTGGACGCGATGGTGGAAGCACGGAAACG
AACCAAAGATGGAATTTTGATCTTAGATGATACTACACCAAACCGTTTCG
ACATTTTTAATCAGGTGAAGGAACCATGGAAGGCATACCACAACAAACGA
AATGATTTCAAAGAAGAAGAGAACCCATACAAGTATCTACAAGAGGGAAA
GGTTTTGATCACCAACGAAGTAGTATCGTTAGGTTTCGAATGGACAACAC
TTATAATATTTGAAGGCAGACTTGCTCCACCGACTTACCACGAGTGTAAC
TTTATGATGAGGTGTACCACAAACCTCATCATTGTCAAGAAAAACAAACC
CTCACCCTGATGATTCccttataaatatttttaaaacatgaAGACACTGG
GAACGAATTTACAagacagttttttttaaatgagagaTAATACAAGCAGC
AGCAATGTATTATATTCACCAGATTCTGCAAACGGACTCGCAATAATGAG
CCGAGttaattttgtttcatttaGCCACAAGCCATTTTCGAAGATGGTAG
TAGTATTAGTATAGCAGCAGtaataatatttcattttctcatCGAGTTTA
TTTtcctcgattttttttcttaatacAAAC Run BLAST on NCBI protein sequence of TCONS_00070470-protein >TCONS_00070470-protein ID=TCONS_00070470-protein|Name=TCONS_00070470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
MKRELSTDRVFQQLDSNHQLFEQRLGDQFESGWTFFPVVCVQNSSISNAS
PHFIIMGTDIKSWLTSILGNFPIVQIAHRPTPLDQVQKLLKIVVFSIHVS
KKDLVAPITSSNWVKYIADAIENVSTSDNILFYSTQQMAALNSNDACYNK
LMILGPFGVGKSILLRDKSIQLNEQPGYKGKVMYLLGFTPGKKYHSLLCF
RLMVDLEEKHESKWWKLKADRKTTKRIRINFLNKSSKMASKLCSVMSLTW
ITKKVW Run BLAST on NCBI transcript from alignment at scaffold_56:533349..537022+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070470 ID=TCONS_00070470|Name=TCONS_00070470|organism=Clytia hemisphaerica|type=transcript|length=3674bp|location=Sequence derived from alignment at scaffold_56:533349..537022+ (Clytia hemisphaerica)
TCGTGtgcaaaaagtagaaaatattAAGAGAAGAGAAAAAGCAGTTGtct
tgtgttttgttttgttttgaaagcgAGAGATGGCGAACATTGAGCAGAAA
TTACGGTTGTTGCAACCAAAACCAATCGACCCTTCAAAATGTGATCCAAA
TAAATCTTTGTACTGGCAGATCATCGACAACAATCAAACTGCATTGAATC
GTCAAGCCAAACAATTTAATTTGGGAAACACCCTCAAGTTTAATGACCCG
ATCAAAGCTGCCATGTTTCTCCTTCAAAGAGAGTACGGTGATTCTTCTCT
TTTCAAGAAAGATGTACATGAAGCTGTCTTTATACCTCCAACGTTTGTTT
CCAATCAATACATGAAAAAGTCACCTGTAGCTATTCTTGAGTATGAAGTC
AAGAAAGATATTGATAGACTTTTGGACAATTTGAAAGAACATTCACCTGA
TTACTGGTTGACAAAAGAATTACAAACCTTCCTGCAAACACAAAATGGTG
ATGATGATTGTATCGATAAGAAGGCGTTCGATCAATGGATAGTGAACCTG
AAAATCATGTATTTAGTTATCGAGGATCAAAAAACAGATAAGGTGACTTT
ACCGTCAACAACGTCAGACATTGGTGTTTTTGTTCAAGCTTGCATCAATG
ATCTTCCGTCGACACCACCAAAAATAGCATTAAAAACCTTTCTGAGAGAG
TCTGTTATAAAAAAGGGCTTCAAAAAGCTGCTTAAACAGAAGATCGAGGA
TAATCCACCACAAGATANCAAAAAAGGACTTCAAAAAGCTGCTTAAACAG
AAGATCGAGGATAATCCACCCCAAGATTCAAACCTTCGATGGCTTTTTGA
ATTAGAATTGACAGAGCTGGGTGAACAAATTGAACATTGGTTTTATGATC
AGTTATTGCCGCTTAAAGATGACACTCTTCAGGACACAGTTGTTCTTTCA
TCTGTCAATTTCTTAACAGacgttaaaaagaaaagaaatcggGAATCAGA
CCTATTGATCATCTCGTGGCAAAGACAACTCATCATTTCTGTCGAGatcc
cagacggcacacaacgtcaaaacaacgtccatgtgacattcataacgtcc
aaataacgttatttgaacgttaaaacaacgtccatgtgacattcataacg
tccaaataacgttatttgaacgttaaaacaacgttgtgtgccagctggga
tgaaACGCGAGCTCAGCACTGATCGAGTGTTTCAACAATTGGATTCGAAC
CATCAATTATTCGAGCAAAGATTGGGAGATCAATTTGAATCTGGATGGAC
CTTCTTCCCCGTTGTCTGTGTCCAAAACAGTTCCATTTCAAACGCTAGCC
CACATTTCATCATCATGGGGACTGATATAAAGTCATGGTTAACGAGTATC
CTTGGTAATTTTCCGATCGTTCAAATTGCTCATAGACCAACTCCACTCGA
TCAAGttcaaaagcttttaaaaattGTTGTGTTTTCGATTCACGTTTCAA
AGAAGGACCTCGTTGCACCCATAACCAGTTCAAACTGGGTGAAGTATATC
GCAGACGCCATCGAAAATGTTTCAACAAGCGACAATATTCTATTTTATTC
CACTCAACAGATGGCAGCACTGAATAGCAACGATGCTTGCTATAACAAAT
TGATGATTCTTGGCCCATTTGGTGTGGGAAAAAGCATCTTATTAAGGGAC
AAATCCATCCAACTAAACGAACAGCCAGGATACAAAGGGAAAGTGATGTA
TCTGTTAGGTTTTACACCTGGTAAAAAGTACCACAGTTTATTGTGTTTCC
GTTTGATGGTCGATTTGGAAGAGAAGCACGAATCAAAGTGGTGGAAATTG
AAAGCGGACCGGTAAGTTTACAGAAAATCATTTTACTTCATGAACCCAAG
GCCCAAAATGGCCGTAACGAGCTTACTGAACATtgggtcattccatttta
tgTCCATACAGggttggacgaacatttccagggggtgactTAAacagaat
ttccagggggtgactTGAGCAGAATTTCCAGGGTTTCTAAAAGAgtgttg
ttttaaattttttccaaggggtaaaagactgatttcagTTCGCCCAccgt
cactttaaggtatgcaaagaaatcttgcaaatttttctattttccagGGT
Gtccacacatttccaagaaatcttttttgactagaaaaggttcgtccacc
ccctgtgtggaaatttaatggaatggcccattgtaCACCAACAGTTTCAT
ATAGTTTAATGGAACTTTGCATATTAGCAATAATCAATCCCCATTGAAAG
GGTGATTTGGCCCAAATGGCCCAATTACGTCATCAAGGGTCCTATACAAG
TCGAATTTTGAAAGTCTTGAATGTCTGAGCAGTGGAAGTTTGATTCTTTC
CATCATTTCAACTCGTTGGGCCGTTGAAGAAATTGAGTAGTTTGTTATTA
AGTTTCGACCATCGATGGCCTTTCTCAattaaaaatgctgattttttATG
TGCTGTGACGTCACCGTTgttctttttcaatttatttcatatgagatgat
tttttataagatacttctcaataattggtcatttgaagtaataaaaatga
cgcgttctttagaaaaagtaacaaaattgttttattactgtttaacgacc
aaccaaatcaaataagagcttgtaaaaactccatctcgtcccgttTATTT
TTCAGAAAGACGACCAAGAGGATCAGGATAAACTTTTTGAACAAATCAAG
CAAGATGGCATCAAAGCTGTGTTCTGTGATGAGTTTGACTTGGATTACAA
AGAAGGTTTGGTGAGAAAGGTTTCCGAGATTGTTGAATACCTATGGGTCG
TCCCATCAACTCAAGATTTAAGCAATGCAAAGTTGGAAAAATGGGAAGAT
GAATTCACCTTTCTCAATCTCGAACAGAACTTTCGTAATGCACGAGAGAT
TGTGAGAATGACGAAGTCTGTTAGTGAGGAGAAGCAATACAATTATAAGA
ACGGTATCGTTTTGCCTCCTGAAAACTTCCCTTCCGGATGTACACCGATA
CTAGTGGATACTTTCGTGGACGCGATGGTGGAAGCACGGAAACGAACCAA
AGATGGAATTTTGATCTTAGATGATACTACACCAAACCGTTTCGACATTT
TTAATCAGGTGAAGGAACCATGGAAGGCATACCACAACAAACGAAATGAT
TTCAAAGAAGAAGAGAACCCATACAAGTATCTACAAGAGGGAAAGGTTTT
GATCACCAACGAAGTAGTATCGTTAGGTTTCGAATGGACAACACTTATAA
TATTTGAAGGCAGACTTGCTCCACCGACTTACCACGAGTGTAACTTTATG
ATGAGGTGTACCACAAACCTCATCATTGTCAAGAAAAACAAACCCTCACC
CTGATGATTCccttataaatatttttaaaacatgaAGACACTGGGAACGA
ATTTACAagacagttttttttaaatgagagaTAATACAAGCAGCAGCAAT
GTATTATATTCACCAGATTCTGCAAACGGACTCGCAATAATGAGCCGAGt
taattttgtttcatttaGCCACAAGCCATTTTCGAAGATGGTAGTAGTAT
TAGTATAGCAGCAGtaataatatttcattttctcatCGAGTTTATTTtcc
tcgattttttttcttaatacAAAC Coding sequence (CDS) from alignment at scaffold_56:533349..537022+ >TCONS_00070470 ID=TCONS_00070470|Name=TCONS_00070470|organism=Clytia hemisphaerica|type=CDS|length=1542bp|location=Sequence derived from alignment at scaffold_56:533349..537022+ (Clytia hemisphaerica)
atgaaACGCGAGCTCAGCACTGATCGAGTGTTTCAACAATTGGATTCGAA
CCATCAATTATTCGAGCAAAGATTGGGAGATCAATTTGAATCTGGATGGA
CCTTCTTCCCCGTTGTCTGTGTCCAAAACAGTTCCATTTCAAACGCTAGC
CCACATTTCATCATCATGGGGACTGATATAAAGTCATGGTTAACGAGTAT
CCTTGGTAATTTTCCGATCGTTCAAATTGCTCATAGACCAACTCCACTCG
ATCAAGttcaaaagcttttaaaaattGTTGTGTTTTCGATTCACGTTTCA
AAGAAGGACCTCGTTGCACCCATAACCAGTTCAAACTGGGTGAAGTATAT
CGCAGACGCCATCGAAAATGTTTCAACAAGCGACAATATTCTATTTTATT
CCACTCAACAGATGGCAGCACTGAATAGCAACGATGCTTGCTATAACAAA
TTGATGATTCTTGGCCCATTTGGTGTGGGAAAAAGCATCTTATTAAGGGA
CAAATCCATCCAACTAAACGAACAGCCAGGATACAAAGGGAAAGTGATGT
ATCTGTTAGGTTTTACACCTGGTAAAAAGTACCACAGTTTATTGTGTTTC
CGTTTGATGGTCGATTTGGAAGAGAAGCACGAATCAAAGTGGTGGAAATT
GAAAGCGGACCGAAAGACGACCAAGAGGATCAGGATAAACTTTTTGAACA
AATCAAGCAAGATGGCATCAAAGCTGTGTTCTGTGATGAGTTTGACTTGG
ATTACAAAGAAGGTTTGGTGAatgaaACGCGAGCTCAGCACTGATCGAGT
GTTTCAACAATTGGATTCGAACCATCAATTATTCGAGCAAAGATTGGGAG
ATCAATTTGAATCTGGATGGACCTTCTTCCCCGTTGTCTGTGTCCAAAAC
AGTTCCATTTCAAACGCTAGCCCACATTTCATCATCATGGGGACTGATAT
AAAGTCATGGTTAACGAGTATCCTTGGTAATTTTCCGATCGTTCAAATTG
CTCATAGACCAACTCCACTCGATCAAGttcaaaagcttttaaaaattGTT
GTGTTTTCGATTCACGTTTCAAAGAAGGACCTCGTTGCACCCATAACCAG
TTCAAACTGGGTGAAGTATATCGCAGACGCCATCGAAAATGTTTCAACAA
GCGACAATATTCTATTTTATTCCACTCAACAGATGGCAGCACTGAATAGC
AACGATGCTTGCTATAACAAATTGATGATTCTTGGCCCATTTGGTGTGGG
AAAAAGCATCTTATTAAGGGACAAATCCATCCAACTAAACGAACAGCCAG
GATACAAAGGGAAAGTGATGTATCTGTTAGGTTTTACACCTGGTAAAAAG
TACCACAGTTTATTGTGTTTCCGTTTGATGGTCGATTTGGAAGAGAAGCA
CGAATCAAAGTGGTGGAAATTGAAAGCGGACCGAAAGACGACCAAGAGGA
TCAGGATAAACTTTTTGAACAAATCAAGCAAGATGGCATCAAAGCTGTGT
TCTGTGATGAGTTTGACTTGGATTACAAAGAAGGTTTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070470-exon-scaffold_56-1491911889:533349..535209 | TCONS_00070470-exon-scaffold_56-1491911889:533349..535209 | Clytia hemisphaerica | exon |
| TCONS_00070470-exon-scaffold_56-1510915933:533349..535209 | TCONS_00070470-exon-scaffold_56-1510915933:533349..535209 | Clytia hemisphaerica | exon |
| TCONS_00070470-exon-scaffold_56-1575043694:533349..535209 | TCONS_00070470-exon-scaffold_56-1575043694:533349..535209 | Clytia hemisphaerica | exon |
| TCONS_00070470-exon-scaffold_56-1491911889:536054..537022 | TCONS_00070470-exon-scaffold_56-1491911889:536054..537022 | Clytia hemisphaerica | exon |
| TCONS_00070470-exon-scaffold_56-1510915933:536054..537022 | TCONS_00070470-exon-scaffold_56-1510915933:536054..537022 | Clytia hemisphaerica | exon |
| TCONS_00070470-exon-scaffold_56-1575043694:536054..537022 | TCONS_00070470-exon-scaffold_56-1575043694:536054..537022 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:533349..537022 + |
Blast
The following BLAST results are available for this feature:
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