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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070479 ID=TCONS_00070479|Name=TCONS_00070479|organism=Clytia hemisphaerica|type=transcript|length=2761bp ACCAAatcagctgaaatttaaaaaagctcCGAAGAAAAGCATATAACAGG TGAGCACCATGCATCACTTCAACAACACAACGATGGCGTTCCCTGTATGG TCCGATGAATTGGATTCGCTTTCCATCAGTGTGGCGGCAACCAACATCTT TGCTGGTTGTTTCAGTCTCATCGGAAACACCCTGGTCATTGCGGTCATGT TGAAAAGATTCCGGACAGCATCCACCTTCAAGAAACTATTGGCGCATTTA GCATTTTGTGACATCATCTATGGGATTTCTATATTACTGGATACACCTAA CTGGCTTAAGAAGCATTGGGTGTATACGCCCATGTTCTGTAAAGTACTCC CTACCACCCAATTCGCTTCCAGTTTGGCAGCAGAAGGAACAGTTGTTGTT ATAGCAATAGAAAGATATCGTGGAATCACACAACCATTGAAAGTACATTG GAACAATcgagatttttcattttccttgatcATAGCTTGGCTCTTTGCTT TCGTCTCTGCTTCACCTTATTTCAACGTCTTAAACACAGTAACCATACCA TATATGGGCAACCATACTTTCTGCATCGAAACTTGGAGCACAGGAGATCA TATCGATCAAGAGAATTCCGCTTTCATTTACTCTACCTATACATTTGTGG GCACCTTCATGTTACCGATGGTCATTTTAGCGGTATTGTACGGACGAATT ATTTACATTATTCGCAAACCGATTGATCCTATCCCATGCTTTGAACAACT TTTCATAAAACGACGCGAAAAAGACATCAGAATCACCAAACTTCTGATTC TAGTCATTGTGGCGTTCGCCATTTGCGTTTTACCCAACCAAATTGGACAC TTTATAATGTCGAAGGCAACgctttcaaaatctgaaaaagaaattcttgc TTATGTTCTATTGATTCCATACCCTTTCCAATGTGTTTTGAATCCTCTCA TATATTCCATCGTAGacaagaaatttagaaaagACGCAAAACAAATCTTA TCGTGTCAAGGGGATAAAGAGCGAAAGATTTCTCGAACAATGACCTCTTA TTTTATGGTTGAAAGTGCATCTCACAAGAAGACATCGCATAGTGGAGAGA CATCTATTTGTTCGATGCCTTTGAGGACATCTCGTGAAGAAAGTGAAAGC TTATTCTGACGAGCAAAGATCGTCGTCAAGAATACCTTGATCAAATCGTC ACCGCATAATCAGAATAAATAGACTGACCTCGGGTCACACACTGTAGAAT CAATACaaccctgtctcgcagcccagTGGAACTTATTCCTGCAGcggaaa tgaaattttctttcgaaatcCCAATTTTTCCAAGCTCAAGAGATCCCATG GGGATGATTTAGAGTGAAAAtgtttccattgaatttcaaatcaaattaaa GTCGATTACCCAGTGAactgtagggtatttttcccaccggggataAGATT TTGATCAGATTTTCAAATGGAGCAGGGTCCCACTGGGTCTGCGATACAGG GTTGTATCAATAGTTGTTGTcataatttctttcaaaatttccagtGTAAT GTtatacaaaagaaagaaaatttatgaGTAGCAATTTCTGTTGTCTTCAT TTGTCTttcctttcacaaaaaaattcttcGTCCGAAGAAAAAACTAATAG GATGAATATTGAAAGGTTTTGCTATTTACATGTTCCataaaaaaggaaag attttttataataCTATTTGCGAGCTTGTATGCTCTTGCCGAGTCCTACA TTATTTAGGAGACTCTTACGAATACCTGAAAATTatggtaaaatcgaaaa atcacaAAACTCGAGAACAGAGAATTGAAAATCTTATCAGGAACCAAAAT ACTCAGGCATACTCTTACATCTTACTTTCGTGtaaaagtcaacaaaattt cgaatttcgaaCTAAAAAAAGGGGTTTGATCTTagtataaaacaaaaaaa atatatgcaTCAAATATCTATCTAATAAGAANGATCTTagtataaaacaa aaaaatatatgcaTCAAATATCTATCTAATAAGAAAACGCGTTATATACA AGCAGCCTTGGCCGAACACGCCTTGATAATAAAGCTCTGTAAAGACAAGG GGATTTCGAGAAACTACTGTCCattcaattaaaaattgaattcgATTCAA ATCCATCATTCAAAAAAGTAAtcgaacaaaaatcaaaacaatttttttat atacataGTTGCGTAGCAACAAAACCACAGAAACAAGGCTGTTTATTTTT AGCCATCATAACTTATTTTAGTACCATTGTGAAAACAGAAATAAGATATT ATATCATTTGTTGTagtgataaaaaaatatctatCAAATAACACATCATC TATCATTCGAAATCTTCTACAACGACTCGCGCATGCGTatgagggggggg gggactttatacatattttatttacaaaaagggAGGTTTGGGGAGAAAAA ACTTCACGGAACGCCACCATCTtcatcaaaaacttcaaacaaacaCAACT TTGTAACATTCTCAAATAACAAGAGTTTATTGAACACGTATATTTCCAAT GCATCAAATCACACCTTATTGCTTAGCAGCTCCACGCATGTCAAACGTTT CAATATGTTGTTTGGTCTTGTACCGATTGATCCACTCGTCGATCATTTGG TTGACGAGGTGAGGTCTTGGTGTGATCACTTGCTTGGCTGCAAGGATTCC ACCATCCGTTATGCAACAATCGAAATATTTCTGTAGTAACTTTTCTTCTT GGCCAACCTAG Run BLAST on NCBI transcript from alignment at scaffold_56:743812..747499+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070479 ID=TCONS_00070479|Name=TCONS_00070479|organism=Clytia hemisphaerica|type=transcript|length=3688bp|location=Sequence derived from alignment at scaffold_56:743812..747499+ (Clytia hemisphaerica) ACCAAatcagctgaaatttaaaaaagctcCGAAGAAAAGCATATAACAGG
GTAAGTTATTTCtatggagtttttgattttgaaatatcaaCCCTAATCAG
ACTGTGGCAATATATAAACACAGTATCTCTAAAAACAATCACTTGTAACG
TTTTTGATTCGCgttattttccaaatatttcaatCTGAACATACTGAGCG
CGTGAAATGGggcgtaatttatgaaaattactCAATTGTTGatcaaaaaa
gcccattcaacAATAACACAGTGACTTAATTGCATCCAACCCAGCAAAAT
AGTGAGTTCCCGAAAGGAAATCGTTTATCTCTCCTCAAGCTATTAGATTA
AGGAGAAACTAAAACCCacaaaattgagtttttttctGCAAAGACAAGAC
GTTTTGAAATCTACTTAAAGCTGTTATGTAAAAATCGAGAAATTTGGGTT
CAGGATGGATATACTCGGTAATGATAAGCTTCGAACAAAGGGTAATGTTT
TGatcagagacttttttgaaaaaagcccTGACTCATAGCTGAAAGcagta
ataatttttcaaatgacAATGTCAAAACACTTTTGGTTGACGACAAAAAC
TTACCGTGGTCTGATTTGTTGCGTTTTTGCTTTTCAGCATCTAAGAGTTT
CTTCTATGTTTCtaatataggaagtatattatagatagaggtctgcgatt
caaacTAGAGATGATCCAGATTTTTGTCAGGTAATAGTCGAGTTGTACTA
TGTGGCTCCACGTGCctattttgtgactttttctctcttcttgcGTTGAA
AATTCACATAAGAATCATACCTTTAAAGAATTAATTTTTGTAAGGTCATG
TCAAAATCGGGCAAATAtagtaaaaatttgatattttgcttGATTTTTAC
CAAAATCCCTCATTTGTTGCCTcgtagattgtcaacaaagacATCTCCAA
GCTAATAATATTTCATTGCATTTTCAGTGAGCACCATGCATCACTTCAAC
AACACAACGATGGCGTTCCCTGTATGGTCCGATGAATTGGATTCGCTTTC
CATCAGTGTGGCGGCAACCAACATCTTTGCTGGTTGTTTCAGTCTCATCG
GAAACACCCTGGTCATTGCGGTCATGTTGAAAAGATTCCGGACAGCATCC
ACCTTCAAGAAACTATTGGCGCATTTAGCATTTTGTGACATCATCTATGG
GATTTCTATATTACTGGATACACCTAACTGGCTTAAGAAGCATTGGGTGT
ATACGCCCATGTTCTGTAAAGTACTCCCTACCACCCAATTCGCTTCCAGT
TTGGCAGCAGAAGGAACAGTTGTTGTTATAGCAATAGAAAGATATCGTGG
AATCACACAACCATTGAAAGTACATTGGAACAATcgagatttttcatttt
ccttgatcATAGCTTGGCTCTTTGCTTTCGTCTCTGCTTCACCTTATTTC
AACGTCTTAAACACAGTAACCATACCATATATGGGCAACCATACTTTCTG
CATCGAAACTTGGAGCACAGGAGATCATATCGATCAAGAGAATTCCGCTT
TCATTTACTCTACCTATACATTTGTGGGCACCTTCATGTTACCGATGGTC
ATTTTAGCGGTATTGTACGGACGAATTATTTACATTATTCGCAAACCGAT
TGATCCTATCCCATGCTTTGAACAACTTTTCATAAAACGACGCGAAAAAG
ACATCAGAATCACCAAACTTCTGATTCTAGTCATTGTGGCGTTCGCCATT
TGCGTTTTACCCAACCAAATTGGACACTTTATAATGTCGAAGGCAACgct
ttcaaaatctgaaaaagaaattcttgcTTATGTTCTATTGATTCCATACC
CTTTCCAATGTGTTTTGAATCCTCTCATATATTCCATCGTAGacaagaaa
tttagaaaagACGCAAAACAAATCTTATCGTGTCAAGGGGATAAAGAGCG
AAAGATTTCTCGAACAATGACCTCTTATTTTATGGTTGAAAGTGCATCTC
ACAAGAAGACATCGCATAGTGGAGAGACATCTATTTGTTCGATGCCTTTG
AGGACATCTCGTGAAGAAAGTGAAAGCTTATTCTGACGAGCAAAGATCGT
CGTCAAGAATACCTTGATCAAATCGTCACCGCATAATCAGAATAAATAGA
CTGACCTCGGGTCACACACTGTAGAATCAATACaaccctgtctcgcagcc
cagTGGAACTTATTCCTGCAGcggaaatgaaattttctttcgaaatcCCA
ATTTTTCCAAGCTCAAGAGATCCCATGGGGATGATTTAGAGTGAAAAtgt
ttccattgaatttcaaatcaaattaaaGTCGATTACCCAGTGAactgtag
ggtatttttcccaccggggataAGATTTTGATCAGATTTTCAAATGGAGC
AGGGTCCCACTGGGTCTGCGATACAGGGTTGTATCAATAGTTGTTGTcat
aatttctttcaaaatttccagtGTAATGTtatacaaaagaaagaaaattt
atgaGTAGCAATTTCTGTTGTCTTCATTTGTCTttcctttcacaaaaaaa
ttcttcGTCCGAAGAAAAAACTAATAGGATGAATATTGAAAGGTTTTGCT
ATTTACATGTTCCataaaaaaggaaagattttttataataCTATTTGCGA
GCTTGTATGCTCTTGCCGAGTCCTACATTATTTAGGAGACTCTTACGAAT
ACCTGAAAATTatggtaaaatcgaaaaatcacaAAACTCGAGAACAGAGA
ATTGAAAATCTTATCAGGAACCAAAATACTCAGGCATACTCTTACATCTT
ACTTTCGTGtaaaagtcaacaaaatttcgaatttcgaaCTAAAAAAAGGG
GTTTGATCTTagtataaaacaaaaaaaatatatgcaTCAAATATCTATCT
AATAAGAANGATCTTagtataaaacaaaaaaatatatgcaTCAAATATCT
ATCTAATAAGAAAACGCGTTATATACAAGCAGCCTTGGCCGAACACGCCT
TGATAATAAAGCTCTGTAAAGACAAGGGGATTTCGAGAAACTACTGTCCa
ttcaattaaaaattgaattcgATTCAAATCCATCATTCAAAAAAGTAAtc
gaacaaaaatcaaaacaatttttttatatacataGTTGCGTAGCAACAAA
ACCACAGAAACAAGGCTGTTTATTTTTAGCCATCATAACTTATTTTAGTA
CCATTGTGAAAACAGAAATAAGATATTATATCATTTGTTGTagtgataaa
aaaatatctatCAAATAACACATCATCTATCATTCGAAATCTTCTACAAC
GACTCGCGCATGCGTatgagggggggggggactttatacatattttattt
acaaaaagggAGGTTTGGGGAGAAAAAACTTCACGGAACGCCACCATCTt
catcaaaaacttcaaacaaacaCAACTTTGTAACATTCTCAAATAACAAG
AGTTTATTGAACACGTATATTTCCAATGCATCAAATCACACCTTATTGCT
TAGCAGCTCCACGCATGTCAAACGTTTCAATATGTTGTTTGGTCTTGTAC
CGATTGATCCACTCGTCGATCATTTGGTTGACGAGGTGAGGTCTTGGTGT
GATCACTTGCTTGGCTGCAAGGATTCCACCATCCGTTATGCAACAATCGA
AATATTTCTGTAGTAACTTTTCTTCTTGGCCAACCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00070479-exon-scaffold_56-1491911889:743812..743861 | TCONS_00070479-exon-scaffold_56-1491911889:743812..743861 | Clytia hemisphaerica | exon |
TCONS_00070479-exon-scaffold_56-1510915933:743812..743861 | TCONS_00070479-exon-scaffold_56-1510915933:743812..743861 | Clytia hemisphaerica | exon |
TCONS_00070479-exon-scaffold_56-1575043694:743812..743861 | TCONS_00070479-exon-scaffold_56-1575043694:743812..743861 | Clytia hemisphaerica | exon |
TCONS_00070479-exon-scaffold_56-1491911889:744789..747499 | TCONS_00070479-exon-scaffold_56-1491911889:744789..747499 | Clytia hemisphaerica | exon |
TCONS_00070479-exon-scaffold_56-1510915933:744789..747499 | TCONS_00070479-exon-scaffold_56-1510915933:744789..747499 | Clytia hemisphaerica | exon |
TCONS_00070479-exon-scaffold_56-1575043694:744789..747499 | TCONS_00070479-exon-scaffold_56-1575043694:744789..747499 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_56 | supercontig | scaffold_56:743812..747499 + |
Blast
BLAST of TCONS_00070479 vs. Swiss-Prot (Human)
Match: QRFPR (Pyroglutamylated RFamide peptide receptor OS=Homo sapiens GN=QRFPR PE=2 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 3.275e-19 Identity = 79/329 (24.01%), Postives = 146/329 (44.38%), Query Frame = 2
Query: 95 VWSDELDSLS-ISVAATNIFAGCFSLIGNTLVIAVMLKRFRTASTFKKLLAHLAFCDI-IYGISILLDTPNWLKKHWVYTPMFCKVLPTTQFASSLAAEGTVVVIAIERYRGITQPLKVHW---NNRDFSFSLIIAWLFAFVSASPYFNVLN---TVTIPYMGNHTFCIETWSTGDHIDQENSAFIYSTYTFVGTFMLPMVILAVLYGRXXXXXXXXXXXXXCFEQLFIKRR-------------------EKDIRITKLLILVIVAFAICVLPNQIGHFIMSKATLSKSE-----KEILAYVLLIPYPFQCVLNPLIYSIVDKKFRKD 985
V++ EL + +++ T + +L GN LV V+ + + + LA D+ I I + + +W+ CK++P Q + + T+ IA+ER++G+ P K+ W N R F+ L + WL A + SP ++V Y H C+E W++ H IY+T+ V F+LP++++ +LY +I Y +L+IK+R K R +++ V+ FA+C P + H ++ + K K I A V +I + + NP++Y+ +++ F+K+
Sbjct: 35 VYTPELPGRAKLALVLTGVLIFALALFGNALVFYVVTRSKAMRTVTNIFICSLALSDLLITFFCIPVTMLQNISDNWLGGAFICKMVPFVQSTAVVTEILTMTCIAVERHQGLVHPFKMKWQYTNRRAFTM-LGVVWLVAVIVGSPMWHVQQLEIKYDFLYEKEHICCLEEWTSPVHQK------IYTTFILVILFLLPLMVMLILYSKIGY-------------ELWIKKRVGDGSVLRTIHGKEMSKIARKKKRAVIMMVTVVALFAVCWAPFHVVHMMIEYSNFEKEYDDVTIKMIFAIVQIIGFS-NSICNPIVYAFMNENFKKN 342
The following BLAST results are available for this feature:
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