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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070479 ID=TCONS_00070479|Name=TCONS_00070479|organism=Clytia hemisphaerica|type=transcript|length=2761bp
ACCAAatcagctgaaatttaaaaaagctcCGAAGAAAAGCATATAACAGG
TGAGCACCATGCATCACTTCAACAACACAACGATGGCGTTCCCTGTATGG
TCCGATGAATTGGATTCGCTTTCCATCAGTGTGGCGGCAACCAACATCTT
TGCTGGTTGTTTCAGTCTCATCGGAAACACCCTGGTCATTGCGGTCATGT
TGAAAAGATTCCGGACAGCATCCACCTTCAAGAAACTATTGGCGCATTTA
GCATTTTGTGACATCATCTATGGGATTTCTATATTACTGGATACACCTAA
CTGGCTTAAGAAGCATTGGGTGTATACGCCCATGTTCTGTAAAGTACTCC
CTACCACCCAATTCGCTTCCAGTTTGGCAGCAGAAGGAACAGTTGTTGTT
ATAGCAATAGAAAGATATCGTGGAATCACACAACCATTGAAAGTACATTG
GAACAATcgagatttttcattttccttgatcATAGCTTGGCTCTTTGCTT
TCGTCTCTGCTTCACCTTATTTCAACGTCTTAAACACAGTAACCATACCA
TATATGGGCAACCATACTTTCTGCATCGAAACTTGGAGCACAGGAGATCA
TATCGATCAAGAGAATTCCGCTTTCATTTACTCTACCTATACATTTGTGG
GCACCTTCATGTTACCGATGGTCATTTTAGCGGTATTGTACGGACGAATT
ATTTACATTATTCGCAAACCGATTGATCCTATCCCATGCTTTGAACAACT
TTTCATAAAACGACGCGAAAAAGACATCAGAATCACCAAACTTCTGATTC
TAGTCATTGTGGCGTTCGCCATTTGCGTTTTACCCAACCAAATTGGACAC
TTTATAATGTCGAAGGCAACgctttcaaaatctgaaaaagaaattcttgc
TTATGTTCTATTGATTCCATACCCTTTCCAATGTGTTTTGAATCCTCTCA
TATATTCCATCGTAGacaagaaatttagaaaagACGCAAAACAAATCTTA
TCGTGTCAAGGGGATAAAGAGCGAAAGATTTCTCGAACAATGACCTCTTA
TTTTATGGTTGAAAGTGCATCTCACAAGAAGACATCGCATAGTGGAGAGA
CATCTATTTGTTCGATGCCTTTGAGGACATCTCGTGAAGAAAGTGAAAGC
TTATTCTGACGAGCAAAGATCGTCGTCAAGAATACCTTGATCAAATCGTC
ACCGCATAATCAGAATAAATAGACTGACCTCGGGTCACACACTGTAGAAT
CAATACaaccctgtctcgcagcccagTGGAACTTATTCCTGCAGcggaaa
tgaaattttctttcgaaatcCCAATTTTTCCAAGCTCAAGAGATCCCATG
GGGATGATTTAGAGTGAAAAtgtttccattgaatttcaaatcaaattaaa
GTCGATTACCCAGTGAactgtagggtatttttcccaccggggataAGATT
TTGATCAGATTTTCAAATGGAGCAGGGTCCCACTGGGTCTGCGATACAGG
GTTGTATCAATAGTTGTTGTcataatttctttcaaaatttccagtGTAAT
GTtatacaaaagaaagaaaatttatgaGTAGCAATTTCTGTTGTCTTCAT
TTGTCTttcctttcacaaaaaaattcttcGTCCGAAGAAAAAACTAATAG
GATGAATATTGAAAGGTTTTGCTATTTACATGTTCCataaaaaaggaaag
attttttataataCTATTTGCGAGCTTGTATGCTCTTGCCGAGTCCTACA
TTATTTAGGAGACTCTTACGAATACCTGAAAATTatggtaaaatcgaaaa
atcacaAAACTCGAGAACAGAGAATTGAAAATCTTATCAGGAACCAAAAT
ACTCAGGCATACTCTTACATCTTACTTTCGTGtaaaagtcaacaaaattt
cgaatttcgaaCTAAAAAAAGGGGTTTGATCTTagtataaaacaaaaaaa
atatatgcaTCAAATATCTATCTAATAAGAANGATCTTagtataaaacaa
aaaaatatatgcaTCAAATATCTATCTAATAAGAAAACGCGTTATATACA
AGCAGCCTTGGCCGAACACGCCTTGATAATAAAGCTCTGTAAAGACAAGG
GGATTTCGAGAAACTACTGTCCattcaattaaaaattgaattcgATTCAA
ATCCATCATTCAAAAAAGTAAtcgaacaaaaatcaaaacaatttttttat
atacataGTTGCGTAGCAACAAAACCACAGAAACAAGGCTGTTTATTTTT
AGCCATCATAACTTATTTTAGTACCATTGTGAAAACAGAAATAAGATATT
ATATCATTTGTTGTagtgataaaaaaatatctatCAAATAACACATCATC
TATCATTCGAAATCTTCTACAACGACTCGCGCATGCGTatgagggggggg
gggactttatacatattttatttacaaaaagggAGGTTTGGGGAGAAAAA
ACTTCACGGAACGCCACCATCTtcatcaaaaacttcaaacaaacaCAACT
TTGTAACATTCTCAAATAACAAGAGTTTATTGAACACGTATATTTCCAAT
GCATCAAATCACACCTTATTGCTTAGCAGCTCCACGCATGTCAAACGTTT
CAATATGTTGTTTGGTCTTGTACCGATTGATCCACTCGTCGATCATTTGG
TTGACGAGGTGAGGTCTTGGTGTGATCACTTGCTTGGCTGCAAGGATTCC
ACCATCCGTTATGCAACAATCGAAATATTTCTGTAGTAACTTTTCTTCTT
GGCCAACCTAG Run BLAST on NCBI transcript from alignment at scaffold_56:743812..747499+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070479 ID=TCONS_00070479|Name=TCONS_00070479|organism=Clytia hemisphaerica|type=transcript|length=3688bp|location=Sequence derived from alignment at scaffold_56:743812..747499+ (Clytia hemisphaerica)
ACCAAatcagctgaaatttaaaaaagctcCGAAGAAAAGCATATAACAGG
GTAAGTTATTTCtatggagtttttgattttgaaatatcaaCCCTAATCAG
ACTGTGGCAATATATAAACACAGTATCTCTAAAAACAATCACTTGTAACG
TTTTTGATTCGCgttattttccaaatatttcaatCTGAACATACTGAGCG
CGTGAAATGGggcgtaatttatgaaaattactCAATTGTTGatcaaaaaa
gcccattcaacAATAACACAGTGACTTAATTGCATCCAACCCAGCAAAAT
AGTGAGTTCCCGAAAGGAAATCGTTTATCTCTCCTCAAGCTATTAGATTA
AGGAGAAACTAAAACCCacaaaattgagtttttttctGCAAAGACAAGAC
GTTTTGAAATCTACTTAAAGCTGTTATGTAAAAATCGAGAAATTTGGGTT
CAGGATGGATATACTCGGTAATGATAAGCTTCGAACAAAGGGTAATGTTT
TGatcagagacttttttgaaaaaagcccTGACTCATAGCTGAAAGcagta
ataatttttcaaatgacAATGTCAAAACACTTTTGGTTGACGACAAAAAC
TTACCGTGGTCTGATTTGTTGCGTTTTTGCTTTTCAGCATCTAAGAGTTT
CTTCTATGTTTCtaatataggaagtatattatagatagaggtctgcgatt
caaacTAGAGATGATCCAGATTTTTGTCAGGTAATAGTCGAGTTGTACTA
TGTGGCTCCACGTGCctattttgtgactttttctctcttcttgcGTTGAA
AATTCACATAAGAATCATACCTTTAAAGAATTAATTTTTGTAAGGTCATG
TCAAAATCGGGCAAATAtagtaaaaatttgatattttgcttGATTTTTAC
CAAAATCCCTCATTTGTTGCCTcgtagattgtcaacaaagacATCTCCAA
GCTAATAATATTTCATTGCATTTTCAGTGAGCACCATGCATCACTTCAAC
AACACAACGATGGCGTTCCCTGTATGGTCCGATGAATTGGATTCGCTTTC
CATCAGTGTGGCGGCAACCAACATCTTTGCTGGTTGTTTCAGTCTCATCG
GAAACACCCTGGTCATTGCGGTCATGTTGAAAAGATTCCGGACAGCATCC
ACCTTCAAGAAACTATTGGCGCATTTAGCATTTTGTGACATCATCTATGG
GATTTCTATATTACTGGATACACCTAACTGGCTTAAGAAGCATTGGGTGT
ATACGCCCATGTTCTGTAAAGTACTCCCTACCACCCAATTCGCTTCCAGT
TTGGCAGCAGAAGGAACAGTTGTTGTTATAGCAATAGAAAGATATCGTGG
AATCACACAACCATTGAAAGTACATTGGAACAATcgagatttttcatttt
ccttgatcATAGCTTGGCTCTTTGCTTTCGTCTCTGCTTCACCTTATTTC
AACGTCTTAAACACAGTAACCATACCATATATGGGCAACCATACTTTCTG
CATCGAAACTTGGAGCACAGGAGATCATATCGATCAAGAGAATTCCGCTT
TCATTTACTCTACCTATACATTTGTGGGCACCTTCATGTTACCGATGGTC
ATTTTAGCGGTATTGTACGGACGAATTATTTACATTATTCGCAAACCGAT
TGATCCTATCCCATGCTTTGAACAACTTTTCATAAAACGACGCGAAAAAG
ACATCAGAATCACCAAACTTCTGATTCTAGTCATTGTGGCGTTCGCCATT
TGCGTTTTACCCAACCAAATTGGACACTTTATAATGTCGAAGGCAACgct
ttcaaaatctgaaaaagaaattcttgcTTATGTTCTATTGATTCCATACC
CTTTCCAATGTGTTTTGAATCCTCTCATATATTCCATCGTAGacaagaaa
tttagaaaagACGCAAAACAAATCTTATCGTGTCAAGGGGATAAAGAGCG
AAAGATTTCTCGAACAATGACCTCTTATTTTATGGTTGAAAGTGCATCTC
ACAAGAAGACATCGCATAGTGGAGAGACATCTATTTGTTCGATGCCTTTG
AGGACATCTCGTGAAGAAAGTGAAAGCTTATTCTGACGAGCAAAGATCGT
CGTCAAGAATACCTTGATCAAATCGTCACCGCATAATCAGAATAAATAGA
CTGACCTCGGGTCACACACTGTAGAATCAATACaaccctgtctcgcagcc
cagTGGAACTTATTCCTGCAGcggaaatgaaattttctttcgaaatcCCA
ATTTTTCCAAGCTCAAGAGATCCCATGGGGATGATTTAGAGTGAAAAtgt
ttccattgaatttcaaatcaaattaaaGTCGATTACCCAGTGAactgtag
ggtatttttcccaccggggataAGATTTTGATCAGATTTTCAAATGGAGC
AGGGTCCCACTGGGTCTGCGATACAGGGTTGTATCAATAGTTGTTGTcat
aatttctttcaaaatttccagtGTAATGTtatacaaaagaaagaaaattt
atgaGTAGCAATTTCTGTTGTCTTCATTTGTCTttcctttcacaaaaaaa
ttcttcGTCCGAAGAAAAAACTAATAGGATGAATATTGAAAGGTTTTGCT
ATTTACATGTTCCataaaaaaggaaagattttttataataCTATTTGCGA
GCTTGTATGCTCTTGCCGAGTCCTACATTATTTAGGAGACTCTTACGAAT
ACCTGAAAATTatggtaaaatcgaaaaatcacaAAACTCGAGAACAGAGA
ATTGAAAATCTTATCAGGAACCAAAATACTCAGGCATACTCTTACATCTT
ACTTTCGTGtaaaagtcaacaaaatttcgaatttcgaaCTAAAAAAAGGG
GTTTGATCTTagtataaaacaaaaaaaatatatgcaTCAAATATCTATCT
AATAAGAANGATCTTagtataaaacaaaaaaatatatgcaTCAAATATCT
ATCTAATAAGAAAACGCGTTATATACAAGCAGCCTTGGCCGAACACGCCT
TGATAATAAAGCTCTGTAAAGACAAGGGGATTTCGAGAAACTACTGTCCa
ttcaattaaaaattgaattcgATTCAAATCCATCATTCAAAAAAGTAAtc
gaacaaaaatcaaaacaatttttttatatacataGTTGCGTAGCAACAAA
ACCACAGAAACAAGGCTGTTTATTTTTAGCCATCATAACTTATTTTAGTA
CCATTGTGAAAACAGAAATAAGATATTATATCATTTGTTGTagtgataaa
aaaatatctatCAAATAACACATCATCTATCATTCGAAATCTTCTACAAC
GACTCGCGCATGCGTatgagggggggggggactttatacatattttattt
acaaaaagggAGGTTTGGGGAGAAAAAACTTCACGGAACGCCACCATCTt
catcaaaaacttcaaacaaacaCAACTTTGTAACATTCTCAAATAACAAG
AGTTTATTGAACACGTATATTTCCAATGCATCAAATCACACCTTATTGCT
TAGCAGCTCCACGCATGTCAAACGTTTCAATATGTTGTTTGGTCTTGTAC
CGATTGATCCACTCGTCGATCATTTGGTTGACGAGGTGAGGTCTTGGTGT
GATCACTTGCTTGGCTGCAAGGATTCCACCATCCGTTATGCAACAATCGA
AATATTTCTGTAGTAACTTTTCTTCTTGGCCAACCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070479-exon-scaffold_56-1491911889:743812..743861 | TCONS_00070479-exon-scaffold_56-1491911889:743812..743861 | Clytia hemisphaerica | exon |
| TCONS_00070479-exon-scaffold_56-1510915933:743812..743861 | TCONS_00070479-exon-scaffold_56-1510915933:743812..743861 | Clytia hemisphaerica | exon |
| TCONS_00070479-exon-scaffold_56-1575043694:743812..743861 | TCONS_00070479-exon-scaffold_56-1575043694:743812..743861 | Clytia hemisphaerica | exon |
| TCONS_00070479-exon-scaffold_56-1491911889:744789..747499 | TCONS_00070479-exon-scaffold_56-1491911889:744789..747499 | Clytia hemisphaerica | exon |
| TCONS_00070479-exon-scaffold_56-1510915933:744789..747499 | TCONS_00070479-exon-scaffold_56-1510915933:744789..747499 | Clytia hemisphaerica | exon |
| TCONS_00070479-exon-scaffold_56-1575043694:744789..747499 | TCONS_00070479-exon-scaffold_56-1575043694:744789..747499 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:743812..747499 + |
Blast
BLAST of TCONS_00070479 vs. Swiss-Prot (Human)
Match: QRFPR (Pyroglutamylated RFamide peptide receptor OS=Homo sapiens GN=QRFPR PE=2 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 3.275e-19 Identity = 79/329 (24.01%), Postives = 146/329 (44.38%), Query Frame = 2
Query: 95 VWSDELDSLS-ISVAATNIFAGCFSLIGNTLVIAVMLKRFRTASTFKKLLAHLAFCDI-IYGISILLDTPNWLKKHWVYTPMFCKVLPTTQFASSLAAEGTVVVIAIERYRGITQPLKVHW---NNRDFSFSLIIAWLFAFVSASPYFNVLN---TVTIPYMGNHTFCIETWSTGDHIDQENSAFIYSTYTFVGTFMLPMVILAVLYGRXXXXXXXXXXXXXCFEQLFIKRR-------------------EKDIRITKLLILVIVAFAICVLPNQIGHFIMSKATLSKSE-----KEILAYVLLIPYPFQCVLNPLIYSIVDKKFRKD 985
V++ EL + +++ T + +L GN LV V+ + + + LA D+ I I + + +W+ CK++P Q + + T+ IA+ER++G+ P K+ W N R F+ L + WL A + SP ++V Y H C+E W++ H IY+T+ V F+LP++++ +LY +I Y +L+IK+R K R +++ V+ FA+C P + H ++ + K K I A V +I + + NP++Y+ +++ F+K+
Sbjct: 35 VYTPELPGRAKLALVLTGVLIFALALFGNALVFYVVTRSKAMRTVTNIFICSLALSDLLITFFCIPVTMLQNISDNWLGGAFICKMVPFVQSTAVVTEILTMTCIAVERHQGLVHPFKMKWQYTNRRAFTM-LGVVWLVAVIVGSPMWHVQQLEIKYDFLYEKEHICCLEEWTSPVHQK------IYTTFILVILFLLPLMVMLILYSKIGY-------------ELWIKKRVGDGSVLRTIHGKEMSKIARKKKRAVIMMVTVVALFAVCWAPFHVVHMMIEYSNFEKEYDDVTIKMIFAIVQIIGFS-NSICNPIVYAFMNENFKKN 342
The following BLAST results are available for this feature:
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