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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070480 ID=TCONS_00070480|Name=TCONS_00070480|organism=Clytia hemisphaerica|type=transcript|length=2738bp
TCGGTAATGATAAGCTTCGAACAAAGGTGAGCACCATGCATCACTTCAAC
AACACAACGATGGCGTTCCCTGTATGGTCCGATGAATTGGATTCGCTTTC
CATCAGTGTGGCGGCAACCAACATCTTTGCTGGTTGTTTCAGTCTCATCG
GAAACACCCTGGTCATTGCGGTCATGTTGAAAAGATTCCGGACAGCATCC
ACCTTCAAGAAACTATTGGCGCATTTAGCATTTTGTGACATCATCTATGG
GATTTCTATATTACTGGATACACCTAACTGGCTTAAGAAGCATTGGGTGT
ATACGCCCATGTTCTGTAAAGTACTCCCTACCACCCAATTCGCTTCCAGT
TTGGCAGCAGAAGGAACAGTTGTTGTTATAGCAATAGAAAGATATCGTGG
AATCACACAACCATTGAAAGTACATTGGAACAATcgagatttttcatttt
ccttgatcATAGCTTGGCTCTTTGCTTTCGTCTCTGCTTCACCTTATTTC
AACGTCTTAAACACAGTAACCATACCATATATGGGCAACCATACTTTCTG
CATCGAAACTTGGAGCACAGGAGATCATATCGATCAAGAGAATTCCGCTT
TCATTTACTCTACCTATACATTTGTGGGCACCTTCATGTTACCGATGGTC
ATTTTAGCGGTATTGTACGGACGAATTATTTACATTATTCGCAAACCGAT
TGATCCTATCCCATGCTTTGAACAACTTTTCATAAAACGACGCGAAAAAG
ACATCAGAATCACCAAACTTCTGATTCTAGTCATTGTGGCGTTCGCCATT
TGCGTTTTACCCAACCAAATTGGACACTTTATAATGTCGAAGGCAACgct
ttcaaaatctgaaaaagaaattcttgcTTATGTTCTATTGATTCCATACC
CTTTCCAATGTGTTTTGAATCCTCTCATATATTCCATCGTAGacaagaaa
tttagaaaagACGCAAAACAAATCTTATCGTGTCAAGGGGATAAAGAGCG
AAAGATTTCTCGAACAATGACCTCTTATTTTATGGTTGAAAGTGCATCTC
ACAAGAAGACATCGCATAGTGGAGAGACATCTATTTGTTCGATGCCTTTG
AGGACATCTCGTGAAGAAAGTGAAAGCTTATTCTGACGAGCAAAGATCGT
CGTCAAGAATACCTTGATCAAATCGTCACCGCATAATCAGAATAAATAGA
CTGACCTCGGGTCACACACTGTAGAATCAATACaaccctgtctcgcagcc
cagTGGAACTTATTCCTGCAGcggaaatgaaattttctttcgaaatcCCA
ATTTTTCCAAGCTCAAGAGATCCCATGGGGATGATTTAGAGTGAAAAtgt
ttccattgaatttcaaatcaaattaaaGTCGATTACCCAGTGAactgtag
ggtatttttcccaccggggataAGATTTTGATCAGATTTTCAAATGGAGC
AGGGTCCCACTGGGTCTGCGATACAGGGTTGTATCAATAGTTGTTGTcat
aatttctttcaaaatttccagtGTAATGTtatacaaaagaaagaaaattt
atgaGTAGCAATTTCTGTTGTCTTCATTTGTCTttcctttcacaaaaaaa
ttcttcGTCCGAAGAAAAAACTAATAGGATGAATATTGAAAGGTTTTGCT
ATTTACATGTTCCataaaaaaggaaagattttttataataCTATTTGCGA
GCTTGTATGCTCTTGCCGAGTCCTACATTATTTAGGAGACTCTTACGAAT
ACCTGAAAATTatggtaaaatcgaaaaatcacaAAACTCGAGAACAGAGA
ATTGAAAATCTTATCAGGAACCAAAATACTCAGGCATACTCTTACATCTT
ACTTTCGTGtaaaagtcaacaaaatttcgaatttcgaaCTAAAAAAAGGG
GTTTGATCTTagtataaaacaaaaaaaatatatgcaTCAAATATCTATCT
AATAAGAANGATCTTagtataaaacaaaaaaatatatgcaTCAAATATCT
ATCTAATAAGAAAACGCGTTATATACAAGCAGCCTTGGCCGAACACGCCT
TGATAATAAAGCTCTGTAAAGACAAGGGGATTTCGAGAAACTACTGTCCa
ttcaattaaaaattgaattcgATTCAAATCCATCATTCAAAAAAGTAAtc
gaacaaaaatcaaaacaatttttttatatacataGTTGCGTAGCAACAAA
ACCACAGAAACAAGGCTGTTTATTTTTAGCCATCATAACTTATTTTAGTA
CCATTGTGAAAACAGAAATAAGATATTATATCATTTGTTGTagtgataaa
aaaatatctatCAAATAACACATCATCTATCATTCGAAATCTTCTACAAC
GACTCGCGCATGCGTatgagggggggggggactttatacatattttattt
acaaaaagggAGGTTTGGGGAGAAAAAACTTCACGGAACGCCACCATCTt
catcaaaaacttcaaacaaacaCAACTTTGTAACATTCTCAAATAACAAG
AGTTTATTGAACACGTATATTTCCAATGCATCAAATCACACCTTATTGCT
TAGCAGCTCCACGCATGTCAAACGTTTCAATATGTTGTTTGGTCTTGTAC
CGATTGATCCACTCGTCGATCATTTGGTTGACGAGGTGAGGTCTTGGTGT
GATCACTTGCTTGGCTGCAAGGATTCCACCATCCGTTATGCAACAATCGA
AATATTTCTGTAGTAACTTTTCTTCTTGGCCAACCTAG Run BLAST on NCBI protein sequence of TCONS_00070480-protein >TCONS_00070480-protein ID=TCONS_00070480-protein|Name=TCONS_00070480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
GNDKLRTKVSTMHHFNNTTMAFPVWSDELDSLSISVAATNIFAGCFSLIG
NTLVIAVMLKRFRTASTFKKLLAHLAFCDIIYGISILLDTPNWLKKHWVY
TPMFCKVLPTTQFASSLAAEGTVVVIAIERYRGITQPLKVHWNNRDFSFS
LIIAWLFAFVSASPYFNVLNTVTIPYMGNHTFCIETWSTGDHIDQENSAF
IYSTYTFVGTFMLPMVILAVLYGRIIYIIRKPIDPIPCFEQLFIKRREKD
IRITKLLILVIVAFAICVLPNQIGHFIMSKATLSKSEKEILAYVLLIPYP
FQCVLNPLIYSIVDKKFRKDAKQILSCQGDKERKISRTMTSYFMVESASH
KKTSHSGETSICSMPLRTSREESESLF Run BLAST on NCBI transcript from alignment at scaffold_56:744276..747499+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070480 ID=TCONS_00070480|Name=TCONS_00070480|organism=Clytia hemisphaerica|type=transcript|length=3224bp|location=Sequence derived from alignment at scaffold_56:744276..747499+ (Clytia hemisphaerica)
TCGGTAATGATAAGCTTCGAACAAAGGGTAATGTTTTGatcagagacttt
tttgaaaaaagcccTGACTCATAGCTGAAAGcagtaataatttttcaaat
gacAATGTCAAAACACTTTTGGTTGACGACAAAAACTTACCGTGGTCTGA
TTTGTTGCGTTTTTGCTTTTCAGCATCTAAGAGTTTCTTCTATGTTTCta
atataggaagtatattatagatagaggtctgcgattcaaacTAGAGATGA
TCCAGATTTTTGTCAGGTAATAGTCGAGTTGTACTATGTGGCTCCACGTG
CctattttgtgactttttctctcttcttgcGTTGAAAATTCACATAAGAA
TCATACCTTTAAAGAATTAATTTTTGTAAGGTCATGTCAAAATCGGGCAA
ATAtagtaaaaatttgatattttgcttGATTTTTACCAAAATCCCTCATT
TGTTGCCTcgtagattgtcaacaaagacATCTCCAAGCTAATAATATTTC
ATTGCATTTTCAGTGAGCACCATGCATCACTTCAACAACACAACGATGGC
GTTCCCTGTATGGTCCGATGAATTGGATTCGCTTTCCATCAGTGTGGCGG
CAACCAACATCTTTGCTGGTTGTTTCAGTCTCATCGGAAACACCCTGGTC
ATTGCGGTCATGTTGAAAAGATTCCGGACAGCATCCACCTTCAAGAAACT
ATTGGCGCATTTAGCATTTTGTGACATCATCTATGGGATTTCTATATTAC
TGGATACACCTAACTGGCTTAAGAAGCATTGGGTGTATACGCCCATGTTC
TGTAAAGTACTCCCTACCACCCAATTCGCTTCCAGTTTGGCAGCAGAAGG
AACAGTTGTTGTTATAGCAATAGAAAGATATCGTGGAATCACACAACCAT
TGAAAGTACATTGGAACAATcgagatttttcattttccttgatcATAGCT
TGGCTCTTTGCTTTCGTCTCTGCTTCACCTTATTTCAACGTCTTAAACAC
AGTAACCATACCATATATGGGCAACCATACTTTCTGCATCGAAACTTGGA
GCACAGGAGATCATATCGATCAAGAGAATTCCGCTTTCATTTACTCTACC
TATACATTTGTGGGCACCTTCATGTTACCGATGGTCATTTTAGCGGTATT
GTACGGACGAATTATTTACATTATTCGCAAACCGATTGATCCTATCCCAT
GCTTTGAACAACTTTTCATAAAACGACGCGAAAAAGACATCAGAATCACC
AAACTTCTGATTCTAGTCATTGTGGCGTTCGCCATTTGCGTTTTACCCAA
CCAAATTGGACACTTTATAATGTCGAAGGCAACgctttcaaaatctgaaa
aagaaattcttgcTTATGTTCTATTGATTCCATACCCTTTCCAATGTGTT
TTGAATCCTCTCATATATTCCATCGTAGacaagaaatttagaaaagACGC
AAAACAAATCTTATCGTGTCAAGGGGATAAAGAGCGAAAGATTTCTCGAA
CAATGACCTCTTATTTTATGGTTGAAAGTGCATCTCACAAGAAGACATCG
CATAGTGGAGAGACATCTATTTGTTCGATGCCTTTGAGGACATCTCGTGA
AGAAAGTGAAAGCTTATTCTGACGAGCAAAGATCGTCGTCAAGAATACCT
TGATCAAATCGTCACCGCATAATCAGAATAAATAGACTGACCTCGGGTCA
CACACTGTAGAATCAATACaaccctgtctcgcagcccagTGGAACTTATT
CCTGCAGcggaaatgaaattttctttcgaaatcCCAATTTTTCCAAGCTC
AAGAGATCCCATGGGGATGATTTAGAGTGAAAAtgtttccattgaatttc
aaatcaaattaaaGTCGATTACCCAGTGAactgtagggtatttttcccac
cggggataAGATTTTGATCAGATTTTCAAATGGAGCAGGGTCCCACTGGG
TCTGCGATACAGGGTTGTATCAATAGTTGTTGTcataatttctttcaaaa
tttccagtGTAATGTtatacaaaagaaagaaaatttatgaGTAGCAATTT
CTGTTGTCTTCATTTGTCTttcctttcacaaaaaaattcttcGTCCGAAG
AAAAAACTAATAGGATGAATATTGAAAGGTTTTGCTATTTACATGTTCCa
taaaaaaggaaagattttttataataCTATTTGCGAGCTTGTATGCTCTT
GCCGAGTCCTACATTATTTAGGAGACTCTTACGAATACCTGAAAATTatg
gtaaaatcgaaaaatcacaAAACTCGAGAACAGAGAATTGAAAATCTTAT
CAGGAACCAAAATACTCAGGCATACTCTTACATCTTACTTTCGTGtaaaa
gtcaacaaaatttcgaatttcgaaCTAAAAAAAGGGGTTTGATCTTagta
taaaacaaaaaaaatatatgcaTCAAATATCTATCTAATAAGAANGATCT
TagtataaaacaaaaaaatatatgcaTCAAATATCTATCTAATAAGAAAA
CGCGTTATATACAAGCAGCCTTGGCCGAACACGCCTTGATAATAAAGCTC
TGTAAAGACAAGGGGATTTCGAGAAACTACTGTCCattcaattaaaaatt
gaattcgATTCAAATCCATCATTCAAAAAAGTAAtcgaacaaaaatcaaa
acaatttttttatatacataGTTGCGTAGCAACAAAACCACAGAAACAAG
GCTGTTTATTTTTAGCCATCATAACTTATTTTAGTACCATTGTGAAAACA
GAAATAAGATATTATATCATTTGTTGTagtgataaaaaaatatctatCAA
ATAACACATCATCTATCATTCGAAATCTTCTACAACGACTCGCGCATGCG
TatgagggggggggggactttatacatattttatttacaaaaagggAGGT
TTGGGGAGAAAAAACTTCACGGAACGCCACCATCTtcatcaaaaacttca
aacaaacaCAACTTTGTAACATTCTCAAATAACAAGAGTTTATTGAACAC
GTATATTTCCAATGCATCAAATCACACCTTATTGCTTAGCAGCTCCACGC
ATGTCAAACGTTTCAATATGTTGTTTGGTCTTGTACCGATTGATCCACTC
GTCGATCATTTGGTTGACGAGGTGAGGTCTTGGTGTGATCACTTGCTTGG
CTGCAAGGATTCCACCATCCGTTATGCAACAATCGAAATATTTCTGTAGT
AACTTTTCTTCTTGGCCAACCTAG Coding sequence (CDS) from alignment at scaffold_56:744276..747499+ >TCONS_00070480 ID=TCONS_00070480|Name=TCONS_00070480|organism=Clytia hemisphaerica|type=CDS|length=2268bp|location=Sequence derived from alignment at scaffold_56:744276..747499+ (Clytia hemisphaerica)
GGTAATGATAAGCTTCGAACAAAGGTGAGCACCATGCATCACTTCAACAA
CACAACGATGGCGTTCCCTGTATGGTCCGATGAATTGGATTCGCTTTCCA
TCAGTGTGGCGGCAACCAACATCTTTGCTGGTTGTTTCAGTCTCATCGGA
AACACCCTGGTCATTGCGGTCATGTTGAAAAGATTCCGGACAGCATCCAC
CTTCAAGAAACTATTGGCGCATTTAGCATTTTGTGACATCATCTATGGGA
TTTCTATATTACTGGATACACCTAACTGGCTTAAGAAGCATTGGGTGTAT
ACGCCCATGTTCTGTAAAGTACTCCCTACCACCCAATTCGCTTCCAGTTT
GGCAGCAGAAGGAACAGTTGTTGTTATAGCAATAGAAAGATATCGTGGAA
TCACACAACCATTGAAAGTACATTGGAACAATcgagatttttcattttcc
ttgatcATAGCTTGGCTCTTTGCTTTCGTCTCTGCTTCACCTTATTTCAA
CGTCTTAAACACAGTAACCATACCATATATGGGCAACCATACTTTCTGCA
TCGAAACTTGGAGCACAGGAGATCATATCGATCAAGAGAATTCCGCTTTC
ATTTACTCTACCTATACATTTGTGGGCACCTTCATGTTACCGATGGTCAT
TTTAGCGGTATTGTACGGACGAATTATTTACATTATTCGCAAACCGATTG
ATCCTATCCCATGCTTTGAACAACTTTTCATAAAACGACGCGAAAAAGAC
ATCAGAATCACCAAACTTCTGATTCTAGTCATTGTGGCGTTCGCCATTTG
CGTTTTACCCAACCAAATTGGACACTTTATAATGTCGAAGGCAACgcttt
caaaatctgaaaaagaaattcttgcTTATGTTCTATTGATTCCATACCCT
TTCCAATGTGTTTTGAATCCTCTCATATATTCCATCGTAGacaagaaatt
tagaaaagACGCAAAACAAATCTTATCGTGTCAAGGGGATAAAGAGCGAA
AGATTTCTCGAACAATGACCTCTTATTTTATGGTTGAAAGTGCATCTCAC
AAGAAGACATCGCATAGTGGAGAGACATCTATTTGTTCGATGCCTTTGAG
GACATCTCGTGAAGAAAGTGAAAGCTTATTCTGAGGTAATGATAAGCTTC
GAACAAAGGTGAGCACCATGCATCACTTCAACAACACAACGATGGCGTTC
CCTGTATGGTCCGATGAATTGGATTCGCTTTCCATCAGTGTGGCGGCAAC
CAACATCTTTGCTGGTTGTTTCAGTCTCATCGGAAACACCCTGGTCATTG
CGGTCATGTTGAAAAGATTCCGGACAGCATCCACCTTCAAGAAACTATTG
GCGCATTTAGCATTTTGTGACATCATCTATGGGATTTCTATATTACTGGA
TACACCTAACTGGCTTAAGAAGCATTGGGTGTATACGCCCATGTTCTGTA
AAGTACTCCCTACCACCCAATTCGCTTCCAGTTTGGCAGCAGAAGGAACA
GTTGTTGTTATAGCAATAGAAAGATATCGTGGAATCACACAACCATTGAA
AGTACATTGGAACAATcgagatttttcattttccttgatcATAGCTTGGC
TCTTTGCTTTCGTCTCTGCTTCACCTTATTTCAACGTCTTAAACACAGTA
ACCATACCATATATGGGCAACCATACTTTCTGCATCGAAACTTGGAGCAC
AGGAGATCATATCGATCAAGAGAATTCCGCTTTCATTTACTCTACCTATA
CATTTGTGGGCACCTTCATGTTACCGATGGTCATTTTAGCGGTATTGTAC
GGACGAATTATTTACATTATTCGCAAACCGATTGATCCTATCCCATGCTT
TGAACAACTTTTCATAAAACGACGCGAAAAAGACATCAGAATCACCAAAC
TTCTGATTCTAGTCATTGTGGCGTTCGCCATTTGCGTTTTACCCAACCAA
ATTGGACACTTTATAATGTCGAAGGCAACgctttcaaaatctgaaaaaga
aattcttgcTTATGTTCTATTGATTCCATACCCTTTCCAATGTGTTTTGA
ATCCTCTCATATATTCCATCGTAGacaagaaatttagaaaagACGCAAAA
CAAATCTTATCGTGTCAAGGGGATAAAGAGCGAAAGATTTCTCGAACAAT
GACCTCTTATTTTATGGTTGAAAGTGCATCTCACAAGAAGACATCGCATA
GTGGAGAGACATCTATTTGTTCGATGCCTTTGAGGACATCTCGTGAAGAA
AGTGAAAGCTTATTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070480-exon-scaffold_56-1491911889:744276..744302 | TCONS_00070480-exon-scaffold_56-1491911889:744276..744302 | Clytia hemisphaerica | exon |
| TCONS_00070480-exon-scaffold_56-1510915933:744276..744302 | TCONS_00070480-exon-scaffold_56-1510915933:744276..744302 | Clytia hemisphaerica | exon |
| TCONS_00070480-exon-scaffold_56-1575043694:744276..744302 | TCONS_00070480-exon-scaffold_56-1575043694:744276..744302 | Clytia hemisphaerica | exon |
| TCONS_00070480-exon-scaffold_56-1491911889:744789..747499 | TCONS_00070480-exon-scaffold_56-1491911889:744789..747499 | Clytia hemisphaerica | exon |
| TCONS_00070480-exon-scaffold_56-1510915933:744789..747499 | TCONS_00070480-exon-scaffold_56-1510915933:744789..747499 | Clytia hemisphaerica | exon |
| TCONS_00070480-exon-scaffold_56-1575043694:744789..747499 | TCONS_00070480-exon-scaffold_56-1575043694:744789..747499 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:744276..747499 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00070480 vs. Swiss-Prot (Human)
Match: QRFPR (Pyroglutamylated RFamide peptide receptor OS=Homo sapiens GN=QRFPR PE=2 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 2.070e-19 Identity = 79/329 (24.01%), Postives = 146/329 (44.38%), Query Frame = 3
Query: 72 VWSDELDSLS-ISVAATNIFAGCFSLIGNTLVIAVMLKRFRTASTFKKLLAHLAFCDI-IYGISILLDTPNWLKKHWVYTPMFCKVLPTTQFASSLAAEGTVVVIAIERYRGITQPLKVHW---NNRDFSFSLIIAWLFAFVSASPYFNVLN---TVTIPYMGNHTFCIETWSTGDHIDQENSAFIYSTYTFVGTFMLPMVILAVLYGRXXXXXXXXXXXXXCFEQLFIKRR-------------------EKDIRITKLLILVIVAFAICVLPNQIGHFIMSKATLSKSE-----KEILAYVLLIPYPFQCVLNPLIYSIVDKKFRKD 962
V++ EL + +++ T + +L GN LV V+ + + + LA D+ I I + + +W+ CK++P Q + + T+ IA+ER++G+ P K+ W N R F+ L + WL A + SP ++V Y H C+E W++ H IY+T+ V F+LP++++ +LY +I Y +L+IK+R K R +++ V+ FA+C P + H ++ + K K I A V +I + + NP++Y+ +++ F+K+
Sbjct: 35 VYTPELPGRAKLALVLTGVLIFALALFGNALVFYVVTRSKAMRTVTNIFICSLALSDLLITFFCIPVTMLQNISDNWLGGAFICKMVPFVQSTAVVTEILTMTCIAVERHQGLVHPFKMKWQYTNRRAFTM-LGVVWLVAVIVGSPMWHVQQLEIKYDFLYEKEHICCLEEWTSPVHQK------IYTTFILVILFLLPLMVMLILYSKIGY-------------ELWIKKRVGDGSVLRTIHGKEMSKIARKKKRAVIMMVTVVALFAVCWAPFHVVHMMIEYSNFEKEYDDVTIKMIFAIVQIIGFS-NSICNPIVYAFMNENFKKN 342
The following BLAST results are available for this feature:
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