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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070482 ID=TCONS_00070482|Name=TCONS_00070482|organism=Clytia hemisphaerica|type=transcript|length=2677bpRun BLAST on NCBI protein sequence of TCONS_00070482-protein >TCONS_00070482-protein ID=TCONS_00070482-protein|Name=TCONS_00070482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp MENNDPKFLLVTANVGSLFEEYGEELRANWISAFHKLISENEPALIALHLRun BLAST on NCBI transcript from alignment at scaffold_56:772172..781923+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070482 ID=TCONS_00070482|Name=TCONS_00070482|organism=Clytia hemisphaerica|type=transcript|length=9752bp|location=Sequence derived from alignment at scaffold_56:772172..781923+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_56:772172..781923+ >TCONS_00070482 ID=TCONS_00070482|Name=TCONS_00070482|organism=Clytia hemisphaerica|type=CDS|length=18000bp|location=Sequence derived from alignment at scaffold_56:772172..781923+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070482 vs. Swiss-Prot (Human)
Match: I5P1 (Type I inositol 1,4,5-trisphosphate 5-phosphatase OS=Homo sapiens GN=INPP5A PE=1 SV=1) HSP 1 Score: 250.751 bits (639), Expect = 8.762e-74 Identity = 147/404 (36.39%), Postives = 237/404 (58.66%), Query Frame = 1
Query: 214 LLVTANVGSLFEEYGEELRANWISAFHKLISENEPALIALHLQEVGGKSHDVSQDIVKNFFQDLYEPEYFDDYYSVQSFVDEEYVDVK-YTAMGCSYFIHKSLKGHLQQWNFHEKRFVVAAEGREINQIT-SDTLFLQKYKFPLSCYSKNQTRLPRKGFTCSKWRLFNKVFVLLNIHLTHDACNIEITRQSPTKYSGYRRRSLEYMLDRL--KTLQSDHQMMFGDFNVRPDTKALLEYLMDSKAVRHTLGAESEDAKPHTVIYRSCNGSTKDLLRIKERLFEFSDYEAFDGSHQTEILKFDKELDWLLNDKFAELPISFRPTYPHKENPKDIGTYSFANVRCPSWCDRILIDQE-----LDNQLSKSTMVYDTFGEDVALGDHKPVFLALHFTSGLQANH*KVH 1398
LLVTANVGSLF++ E L+ NW+ F++++ ++P +ALH QE GGK+++ S V F ++L + +Y + ++DE Y + +TA+G YF+H+SLK ++ Q++F K++ A G+EI T T L+K KFP + + + RKGF ++W + + F L+NIHL HDA N+ SP+ YSG R ++L Y+LDR+ + + +FGDFN R D+K+++E L ++ A++ + +I+R + K +L+++++LF++ + E F ++ T +L+FDKEL + D+ EL ISF P+YP+ E+ + Y N RCP+WCDRIL+ L ++ + + YD G +V +GDHKPVFLA G H VH
Sbjct: 13 LLVTANVGSLFDD-PENLQKNWLREFYQVVHTHKPHFMALHCQEFGGKNYEASMSHVDKFVKELLSSDAMKEYNRARVYLDENYKSQEHFTALGSFYFLHESLK-NIYQFDFKAKKYRKVA-GKEIYSDTLESTPMLEKEKFPQDYFP--ECKWSRKGFIRTRWCIADCAFDLVNIHLFHDASNLVAWETSPSVYSGIRHKALGYVLDRIIDQRFEKVSYFVFGDFNFRLDSKSVVETLCTKATMQTVRAADTNEVV--KLIFRESDNDRKVMLQLEKKLFDYFNQEVFRDNNGTALLEFDKELS-VFKDRLYELDISFPPSYPYSEDARQGEQY--MNTRCPAWCDRILMSPSAKELVLRSESEEKVVTYDHIGPNVCMGDHKPVFLAFRIMPGAGKPHAHVH 406 The following BLAST results are available for this feature:
BLAST of TCONS_00070482 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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