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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070484 ID=TCONS_00070484|Name=TCONS_00070484|organism=Clytia hemisphaerica|type=transcript|length=1721bp
CATGAGGAATCCACACAAGACGTGGTTTGTGATACGACAAAAGTGTGTGA
GAcataatgaaaaataacttaTCTTTTTCAATCGAACGAATCTTACAAAA
TGTAAAGTCTACAGAAACATCAGAGGACATAGAGAAAGAACTCACACAAA
CACAACCTTTGCTTTATCTCCACCATACACAACCAGTGTTGATTGTCCAA
GCATCGGGACAAGGTTACCGACAAACACAGGCGTTACATTATGGAGATAA
AGAAGAGACTGTCGATAGAGAAGAAGAATGCACTTGCGAAAAAGCAACAA
TAGAAACAAAACAATTGAAAGgAAGGAGATTAGGCCACCCTTACACCAGC
AGAGCGTCACCCAAACGAAGGGCGTTTCGCCATACATTTACACCCTATCA
AGTTGTTCAATTGGAAAAACTATTTGAACAAAGTCGATATCTATCGTCAT
CAGAGCGCATGCGTATGTCACGAGAATTGAAAATGACAGACAACCAATTG
AAAACGTGGTATCAGAATCGAAGAACGAAGCTGAAGCGAGAAATCACTGA
AATGTACGATCAACAACGTATCAAACACTCTTTCTTTTCGTAATAGCCTT
CCCTCGGCATTCCCACatgtgaaaacaaaaaagtggaTATTTAGGGTGAA
TTCACAGCGAAAAGTAACTATTTTTCAATAGACTACAGTTCTTTACAATG
AATCCACCAAAAATGTCAGGGTGATTTTTCCTGCGTTCCTCGatccgaaa
atattttcataaattgtTAAAGTCCATTTATGCAGCCTTAAGAAAGTACT
CCTCTGAAGTGAAAAGCAGGGTTTTTCACCTCCCACGAGCTACCTTCTAG
AGGTCATGACTTCTGATACAATAGCTTTTCGTGTAAAATAATTATATACT
GACAAAAAGATGCTTCAAAGTATCTCCAAGATTAAAGtactctgaattat
cttttcaacgttATATAATTTGTTAGAATCAAAGCATTGGTTGAAAGATG
GCAAGCAAAACAAGAATTATTTCACACTTTTAAAGCgaatagatttaaaa
aatatttcatagaGTAGCTTCATGATCATAACATATATATTCTACATCTC
ATACCATATTATATCATATCAATTTTATACTTTTATCAGGAAAATTGTAC
ATTTTTATCACGTAACCGTAGACCATTGTAGTATTTAAAGTTTTGGCGCT
TCATATTGAAGTCTTTGAGTCGCATCGTGTCGATGATCTGTATTACCGTT
GGAAGGTATGTAAATATATGACTTTGTAAATACTcatcaaaaatattgat
tttaacTTCATTTTCATTCTATGTTTCAATGAAATAGAGCAAAAGACTTC
ATCTCTCGACTAGTCCTAAACCATTGAATAGTTAGATATAAGTCGCTCGC
TCAACTTAAAGAATTAAATTGATTGACAACAGGATTTCCAAGAAGTTAAT
CTGTTGAGTAATTTGGGTAAGTGAAATCTCCTGGCCATAATTCTTCTTCT
ATAATCTTCAAATCGGAAATGCCCCTTTTCCTTCAGACACCCTTTCCTTC
AACCAGAGAAATAACCACGCCAAGGGGCCAAGTTTCTCTATCCTTTTCGA
AAGAAACAGACGAATAATGAACTCAAAATTTGACAGTTCCTTTGTATCGT
GTGGCTTGAAgcaattgtttttgtttcaatctTCGTGCTGCTTCTCTCAA
ATGTTTCGGTTCGTACAAGGG Run BLAST on NCBI protein sequence of TCONS_00070484-protein >TCONS_00070484-protein ID=TCONS_00070484-protein|Name=TCONS_00070484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MKNNLSFSIERILQNVKSTETSEDIEKELTQTQPLLYLHHTQPVLIVQAS
GQGYRQTQALHYGDKEETVDREEECTCEKATIETKQLKGRRLGHPYTSRA
SPKRRAFRHTFTPYQVVQLEKLFEQSRYLSSSERMRMSRELKMTDNQLKT
WYQNRRTKLKREITEMYDQQRIKHSFFS Run BLAST on NCBI transcript from alignment at scaffold_56:784936..786902+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070484 ID=TCONS_00070484|Name=TCONS_00070484|organism=Clytia hemisphaerica|type=transcript|length=1967bp|location=Sequence derived from alignment at scaffold_56:784936..786902+ (Clytia hemisphaerica)
CATGAGGAATCCACACAAGACGTGGTTTGTGATACGACAAAAGTGTGTGA
GAcataatgaaaaataacttaTCTTTTTCAATCGAACGAATCTTACAAAA
TGTAAAGTCTACAGAAACATCAGAGGACATAGAGAAAGAACTCACACAAA
CACAACCTTTGCTTTATCTCCACCATACACAACCAGTGTTGATTGTCCAA
GCATCGGGACAAGGTTACCGACAAACACAGGCGTTACATTATGGAGATAA
AGAAGAGACTGTCGATAGAGAAGAAGAATGCACTTGCGAAAAAGCAACAA
TAGAAACAAAACAATTGAAAGGTAAAGCTTTAATGACTTTTAAAGATTCG
AAATCCCGGCGTTAAAAACGAAAGATAAGTTTTTCTCTAGAAACCATTTG
AAAATTGGACGATTCTATAATAAATTGCagcttgaaaattttcaaatcgt
AGTTAACCCTAAAAGTTAATCAAATATTAGGGTGTGCCACatgaaattcc
gtaaaaaataGGTCTGAGCGTGAGAATATAAATTTTCTAAGCGAAGTTct
taaaatctttattttaggAAGGAGATTAGGCCACCCTTACACCAGCAGAG
CGTCACCCAAACGAAGGGCGTTTCGCCATACATTTACACCCTATCAAGTT
GTTCAATTGGAAAAACTATTTGAACAAAGTCGATATCTATCGTCATCAGA
GCGCATGCGTATGTCACGAGAATTGAAAATGACAGACAACCAATTGAAAA
CGTGGTATCAGAATCGAAGAACGAAGCTGAAGCGAGAAATCACTGAAATG
TACGATCAACAACGTATCAAACACTCTTTCTTTTCGTAATAGCCTTCCCT
CGGCATTCCCACatgtgaaaacaaaaaagtggaTATTTAGGGTGAATTCA
CAGCGAAAAGTAACTATTTTTCAATAGACTACAGTTCTTTACAATGAATC
CACCAAAAATGTCAGGGTGATTTTTCCTGCGTTCCTCGatccgaaaatat
tttcataaattgtTAAAGTCCATTTATGCAGCCTTAAGAAAGTACTCCTC
TGAAGTGAAAAGCAGGGTTTTTCACCTCCCACGAGCTACCTTCTAGAGGT
CATGACTTCTGATACAATAGCTTTTCGTGTAAAATAATTATATACTGACA
AAAAGATGCTTCAAAGTATCTCCAAGATTAAAGtactctgaattatcttt
tcaacgttATATAATTTGTTAGAATCAAAGCATTGGTTGAAAGATGGCAA
GCAAAACAAGAATTATTTCACACTTTTAAAGCgaatagatttaaaaaata
tttcatagaGTAGCTTCATGATCATAACATATATATTCTACATCTCATAC
CATATTATATCATATCAATTTTATACTTTTATCAGGAAAATTGTACATTT
TTATCACGTAACCGTAGACCATTGTAGTATTTAAAGTTTTGGCGCTTCAT
ATTGAAGTCTTTGAGTCGCATCGTGTCGATGATCTGTATTACCGTTGGAA
GGTATGTAAATATATGACTTTGTAAATACTcatcaaaaatattgatttta
acTTCATTTTCATTCTATGTTTCAATGAAATAGAGCAAAAGACTTCATCT
CTCGACTAGTCCTAAACCATTGAATAGTTAGATATAAGTCGCTCGCTCAA
CTTAAAGAATTAAATTGATTGACAACAGGATTTCCAAGAAGTTAATCTGT
TGAGTAATTTGGGTAAGTGAAATCTCCTGGCCATAATTCTTCTTCTATAA
TCTTCAAATCGGAAATGCCCCTTTTCCTTCAGACACCCTTTCCTTCAACC
AGAGAAATAACCACGCCAAGGGGCCAAGTTTCTCTATCCTTTTCGAAAGA
AACAGACGAATAATGAACTCAAAATTTGACAGTTCCTTTGTATCGTGTGG
CTTGAAgcaattgtttttgtttcaatctTCGTGCTGCTTCTCTCAAATGT
TTCGGTTCGTACAAGGG Coding sequence (CDS) from alignment at scaffold_56:784936..786902+ >TCONS_00070484 ID=TCONS_00070484|Name=TCONS_00070484|organism=Clytia hemisphaerica|type=CDS|length=1074bp|location=Sequence derived from alignment at scaffold_56:784936..786902+ (Clytia hemisphaerica)
atgaaaaataacttaTCTTTTTCAATCGAACGAATCTTACAAAATGTAAA
GTCTACAGAAACATCAGAGGACATAGAGAAAGAACTCACACAAACACAAC
CTTTGCTTTATCTCCACCATACACAACCAGTGTTGATTGTCCAAGCATCG
GGACAAGGTTACCGACAAACACAGGCGTTACATTATGGAGATAAAGAAGA
GACTGTCGATAGAGAAGAAGAATGCACTTGCGAAAAAGCAACAATAGAAA
CAAAACAATTGAAAGgAAGGAGATTAGGCCACCCTTACACCAGCAGAGCG
TCACCCAAACGAAGGGCGTTTCGCCATACATTTACACCCTATCAAGTTGT
TCAATTGGAAAAACTATTTGAACAAAGTCGATATCTATCGTCATCAGAGC
GCATGCGTATGTCACGAGAATTGAAAATGACAGACAACCAATTGAAAACG
TGGTATCAGAATCGAAGAACGAAGCTGAAGCGAGAAATCACTGAAATGTA
CGATCAACAACGTATCAAACACTCTTTCTTTTCGTAAatgaaaaataact
taTCTTTTTCAATCGAACGAATCTTACAAAATGTAAAGTCTACAGAAACA
TCAGAGGACATAGAGAAAGAACTCACACAAACACAACCTTTGCTTTATCT
CCACCATACACAACCAGTGTTGATTGTCCAAGCATCGGGACAAGGTTACC
GACAAACACAGGCGTTACATTATGGAGATAAAGAAGAGACTGTCGATAGA
GAAGAAGAATGCACTTGCGAAAAAGCAACAATAGAAACAAAACAATTGAA
AGgAAGGAGATTAGGCCACCCTTACACCAGCAGAGCGTCACCCAAACGAA
GGGCGTTTCGCCATACATTTACACCCTATCAAGTTGTTCAATTGGAAAAA
CTATTTGAACAAAGTCGATATCTATCGTCATCAGAGCGCATGCGTATGTC
ACGAGAATTGAAAATGACAGACAACCAATTGAAAACGTGGTATCAGAATC
GAAGAACGAAGCTGAAGCGAGAAATCACTGAAATGTACGATCAACAACGT
ATCAAACACTCTTTCTTTTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070484-exon-scaffold_56-1491911889:784936..785256 | TCONS_00070484-exon-scaffold_56-1491911889:784936..785256 | Clytia hemisphaerica | exon |
| TCONS_00070484-exon-scaffold_56-1510915933:784936..785256 | TCONS_00070484-exon-scaffold_56-1510915933:784936..785256 | Clytia hemisphaerica | exon |
| TCONS_00070484-exon-scaffold_56-1575043694:784936..785256 | TCONS_00070484-exon-scaffold_56-1575043694:784936..785256 | Clytia hemisphaerica | exon |
| TCONS_00070484-exon-scaffold_56-1491911889:785503..786902 | TCONS_00070484-exon-scaffold_56-1491911889:785503..786902 | Clytia hemisphaerica | exon |
| TCONS_00070484-exon-scaffold_56-1510915933:785503..786902 | TCONS_00070484-exon-scaffold_56-1510915933:785503..786902 | Clytia hemisphaerica | exon |
| TCONS_00070484-exon-scaffold_56-1575043694:785503..786902 | TCONS_00070484-exon-scaffold_56-1575043694:785503..786902 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:784936..786902 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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