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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070485 ID=TCONS_00070485|Name=TCONS_00070485|organism=Clytia hemisphaerica|type=transcript|length=2131bpRun BLAST on NCBI protein sequence of TCONS_00070485-protein >TCONS_00070485-protein ID=TCONS_00070485-protein|Name=TCONS_00070485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=539bp MVLYSLFEHAAGYAIFKVNATEEIGALLPEVQESVTDLERFGRLVKLVAFRun BLAST on NCBI transcript from alignment at scaffold_56:823672..833227+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070485 ID=TCONS_00070485|Name=TCONS_00070485|organism=Clytia hemisphaerica|type=transcript|length=9556bp|location=Sequence derived from alignment at scaffold_56:823672..833227+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_56:823672..833227+ >TCONS_00070485 ID=TCONS_00070485|Name=TCONS_00070485|organism=Clytia hemisphaerica|type=CDS|length=17820bp|location=Sequence derived from alignment at scaffold_56:823672..833227+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070485 vs. Swiss-Prot (Human)
Match: NOP56 (Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1 SV=4) HSP 1 Score: 605.905 bits (1561), Expect = 0.000e+0 Identity = 298/437 (68.19%), Postives = 359/437 (82.15%), Query Frame = 1
Query: 73 MVLYSLFEHAAGYAIFKVNATEEIGALLPEVQESVTDLERFGRLVKLVAFSPFKNAANALENINSISEGMVHEDLKAFLEANIPTGKKKSKVALGISDAKIGGVIQEACNIQCEYGQTVSEILRGVRLHFHKMIQGLTAETSGKAQLGLGHSYSRAKVKFNVHRVDNMIIQTIALVDQLDKDINTFSMRIREWYSYHFPELVKIVNDNYLYAKLAQYIKSRXXXXXXXXXXXXXIVMDEAKAKAIYVASKSSMGMDISPIDLINIESFANRVIGLVEYRQKLHAYLTSKMNQVAPNLQALIGDLVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTKGKTPKYGLIFHSSFIGRAGAKNKGRISRYLANKCSIASRIDCFTESPSNLFGKKMHEQVDDRLKFYETGEAPMKNEDAMMEVLEELKSLAEETT 1383
++L+ LFEHA GYA+ + EEI L P+V+ESV +L +F +V+LVAF PF ++ ALEN N++SEG+VHEDL+ LE ++P+ KK KV LG+ D KIG IQE C+ G ++EILRGVRLHFH +++GLT ++ KAQLGLGHSYSRAKVKFNV+RVDNMIIQ+I+L+DQLDKDINTFSMR+REWY YHFPELVKI+NDN Y +LAQ+I +R+EL E+KLE LEE+ MD AKAKAI AS+SSMGMDIS IDLINIESF++RV+ L EYRQ LH YL SKM+QVAP+L ALIG+ VGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKT+G TPKYGLIFHS+FIGRA AKNKGRISRYLANKCSIASRIDCF+E P+++FG+K+ EQV++RL FYETGE P KN D M E + + + A E T
Sbjct: 2 VLLHVLFEHAVGYALLALKEVEEISLLQPQVEESVLNLGKFHSIVRLVAFCPFASSQVALENANAVSEGVVHEDLRLLLETHLPS--KKKKVLLGVGDPKIGAAIQEELGYNCQTGGVIAEILRGVRLHFHNLVKGLTDLSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDKDINTFSMRVREWYGYHFPELVKIINDNATYCRLAQFIGNRRELNEDKLEKLEELTMDGAKAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAMVQAEEAAAEIT 436 The following BLAST results are available for this feature:
BLAST of TCONS_00070485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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