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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070487 ID=TCONS_00070487|Name=TCONS_00070487|organism=Clytia hemisphaerica|type=transcript|length=2061bp
gaaaatttcaacttttataaagaatttcttttatcaaaaattcaactgta
atactttttataaaaaattccacgaataAAATAATACTATAAcatattca
aaaaacatttagaGACATCTAAAAATAAATAGTTATCTAAACATTAATTT
AAAATTGAGCCTAAAATATAATAGATCGTAAACTAATCGATCCCTAATAC
ATGCTAAACAACCAAACCATTTATGTAAAATTCTTAATCTACGCACTTAA
ACTTACTAAAGGGTAGtcgtcaaaaactttcaagtttGTGAATCGAGAAA
GCGAGATGGCTGTAAAAAAAACCCTCACAAATAGCAAAAGTGCATGAGGT
AAATATGTAgaaaatggcttaaaaattatttccgtTATAAGTTACACGGT
GTGGCATTAGAATCTCGCTTTTTCTTACTTGAGAAAAGGTCACTAGCAAC
TTGAGTTTTTACTTTATTGGTAGTAGAGGTATAAAACAGAGTGGTTGCAA
GGAATAAGGTAGGCCACATTCTTCAATTCATTACGAGATACAAAAACACT
TTAGTAGGGGGTCAAACATCTTATGAAAAGATCATCAAAGGTGTTCAAAA
ATCAGCAAATGACCAGGCTGGTAAATTTCCCTAtattacaaaataaaatt
cGTTCTCTCTAAAAATCCCACTCACAAAGCACTTTTGTGTTACCAAAAAC
ATAATCGAATGATTGtctgtaaagtttttatttctcattttccaTCGAAT
TTCGAATTTAACCTCTCTGTCGTTCAATTATATCTTTCTTCTGACGTGCA
GCACATCCACTTGGGCAAATATTACCCTGGCAAGGCTGTGGACACATTGG
AGGATAAATGTTCGTTGTTTGAGGGCAGCCACCTGGACAAGATGGCGGCA
TGCAAGGCTGTGGACACATGTTAACGGTCGATTGTACTACGGTGCACCCC
TGTGGACAGATGTGAGGCGGGCAAGGCGTTGGACAGCTGGATGGCGTCAT
TGCAGTTGTGGTAGGACAGTATGCTGGACAACTTGGTGGTTGACATGGCT
GTGGACATGATGGGATAAGACAGTTTGCAGGGCAAAATGGCGGGATACAA
GGAGACGGACAGGCCGGTGCTTGAGGTGCTGGCATCTGCTGTTGAAGTTT
ACTTGGAGAAAAATAAAACCTTGGAGATTCTTGACAGCCAGATGGACAGC
CTGGTGGTTGACAAGGTTGTGGACACATTGTTGGAGCGGAAGCCATGGTT
TGCGGGCAACCCATAGGGCACCCTGGAGCTTGGCAGGGTTGTGGGCACAT
CTGTGGAGCAGCCATCATGGGAGGTTGCATCATCATAGCGGCACCTTGTG
CACATCCTGAGGGGCACGATGGTGGCATGCATGGTCTTGGACACATCGAT
GGAGCTGAAGCCATGGTCTGTGGGCATCCCATTGGACAGGAGGGTGCTTG
ACAAGGTTGTGGGCACATTTGAGGTGCAGGCATCATGGGAGGAGGCATCA
TCATAGCCGCGCCCTGTGCACATCCCGTGGGGCATGAGGGAGGCATGCAT
GGTCTTGGACACATTGATGGTGCCGAAGCCATGGTTTGTGGGCATCCCAT
TGGACAAGAAGGTGCCTGACAAGGTTGAGGGCACATCTGTGGAGCAGCCA
TCATTGGAGCGGCTTGCATACAGCCAGTTGGACAAGATGGAGGCATACAG
GGCTGTGGACACATCGAAGGCATAGAAGCCATGGTCATGGGGCAACCCAT
TGGGCAACCTGGAGCTTGACAAGGTTGTGGACACATCATCGGTTGAGGTG
GTGACATTTGCTGAAGGAGCTTCTCTGGCGAGAAATAAAATCGTGGCGAC
TCTTGACATCCAGAAGGACAGCCTGGTTGTTGACAGGGCTGTGGACACAT
TGTTGGAGCTGAAGCCATGGTTTGCGGGCATCCCATAGGGCACCCTGGAG
CTTGGCAAGGTTGTGGGCACATCTGTGGAGCAGCCATCATGGGAGGTGGC
ATCATCATAGCGGCACCCTGGGCACATCCTGAGGGGCACGATGGTGGCAT
GCATGGTCTTG Run BLAST on NCBI transcript from alignment at scaffold_56:858684..860984+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070487 ID=TCONS_00070487|Name=TCONS_00070487|organism=Clytia hemisphaerica|type=transcript|length=2301bp|location=Sequence derived from alignment at scaffold_56:858684..860984+ (Clytia hemisphaerica)
gaaaatttcaacttttataaagaatttcttttatcaaaaattcaactgta
atactttttataaaaaattccacgaataAAATAATACTATAAcatattca
aaaaacatttagaGACATCTAAAAATAAATAGTTATCTAAACATTAATTT
AAAATTGAGCCTAAAATATAATAGATCGTAAACTAATCGATCCCTAATAC
ATGCTAAACAACCAAACCATTTATGTAAAATTCTTAATCTACGCACTTAA
ACTTACTAAAGGGTAGtcgtcaaaaactttcaagtttGTGAATCGAGAAA
GCGAGATGGCTGTAAAAAAAACCCTCACAAATAGCAAAAGTGCATGAGGT
AAATATGTAgaaaatggcttaaaaattatttccgtTATAAGTTACACGGT
GTGGCATTAGAATCTCGCTTTTTCTTACTTGAGAAAAGGTCACTAGCAAC
TTGAGTTTTTACTTTATTGGTAGTAGAGGTATAAAACAGAGTGGTTGCAA
GGAATAAGGTAGGCCACATTCTTCAATTCATTACGAGATACAAAAACACT
TTAGTAGGGGGTCAAACATCTTATGAAAAGATCATCAAAGGTGTTCAAAA
ATCAGCAAATGACCAGGCTGGTAAATTTCCCTAtattacaaaataaaatt
cGTTCTCTCTAAAAATCCCACTCACAAAGCACTTTTGTGTTACCAAAAAC
ATAATCGAATGATTGtctgtaaagtttttatttctcattttccaTCGAAT
TTCGAATTTAACCTCTCTGTCGTTCAATTATATCTTTCTTCTGACGTGCA
GCACATCCACTTGGGCAAATATTACCCTGGCAAGGCTGTGGACACATTGG
AGGATAAATGTTCGTTGTTTGAGGGCAGCCACCTGGACAAGATGGCGGCA
TGCAAGGCTGTGGACACATGTTAACGGTCGATTGTACTACGGTGCACCCC
TGTGGACAGATGTGAGGCGGGCAAGGCGTTGGACAGCTGGATGGCGTCAT
TGCAGTTGTGGTAGGACAGTATGCTGGACAACTTGGTGGTTGACATGGCT
GTGGACATGATGGGATAAGACAGTTTGCAGGGCAAAATGGCGGGATACAA
GGAGACGGACAGGCCGGTGCTTGAGGTGCTGGCATCTGCTGTTGAAGTTT
ACTTGGAGAAAAATAAAACCTTGGAGATTCTTGACAGCCAGATGGACAGC
CTGGTGGTTGACAAGGTTGTGGACACATTGTTGGAGCGGAAGCCATGGTT
TGCGGGCAACCCATAGGGCACCCTGGAGCTTGGCAGGGTTGTGGGCACAT
CTGTGGAGCAGCCATCATGGGAGGTTGCATCATCATAGCGGCACCTTGTG
CACATCCTGAGGGGCACGATGGTGGCATGCATGGTCTTGGACACATCGAT
GGAGCTGAAGCCATGGTCTGTGGGCATCCCATTGGACAGGAGGGTGCTTG
ACAAGGTTGTGGACACATTGTTGGAGCGGAAGCCATGGTTTGCGGGCAAC
CCATAGGGCACCCTGGAGCTTGGCAGGGTTGCGGGCACATCTGTGGAGCA
GCCATCATGGGAGGTTGCATCATCATAGCGGCACCTTGTGCACATCCTGA
GGGGCACGATGGTGGCGTGCATGGTCTTGGACACATCGATGGAGCTGAAG
CCATGGTCTGTGGGCATCCCATTGGACAGGAGGGTGCTTGACAAGGTTGT
GGGCACATTTGAGGTGCAGGCATCATGGGAGGAGGCATCATCATAGCCGC
GCCCTGTGCACATCCCGTGGGGCATGAGGGAGGCATGCATGGTCTTGGAC
ACATTGATGGTGCCGAAGCCATGGTTTGTGGGCATCCCATTGGACAAGAA
GGTGCCTGACAAGGTTGAGGGCACATCTGTGGAGCAGCCATCATTGGAGC
GGCTTGCATACAGCCAGTTGGACAAGATGGAGGCATACAGGGCTGTGGAC
ACATCGAAGGCATAGAAGCCATGGTCATGGGGCAACCCATTGGGCAACCT
GGAGCTTGACAAGGTTGTGGACACATCATCGGTTGAGGTGGTGACATTTG
CTGAAGGAGCTTCTCTGGCGAGAAATAAAATCGTGGCGACTCTTGACATC
CAGAAGGACAGCCTGGTTGTTGACAGGGCTGTGGACACATTGTTGGAGCT
GAAGCCATGGTTTGCGGGCATCCCATAGGGCACCCTGGAGCTTGGCAAGG
TTGTGGGCACATCTGTGGAGCAGCCATCATGGGAGGTGGCATCATCATAG
CGGCACCCTGGGCACATCCTGAGGGGCACGATGGTGGCATGCATGGTCTT
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070487-exon-scaffold_56-1491911889:858684..860138 | TCONS_00070487-exon-scaffold_56-1491911889:858684..860138 | Clytia hemisphaerica | exon |
| TCONS_00070487-exon-scaffold_56-1510915933:858684..860138 | TCONS_00070487-exon-scaffold_56-1510915933:858684..860138 | Clytia hemisphaerica | exon |
| TCONS_00070487-exon-scaffold_56-1575043694:858684..860138 | TCONS_00070487-exon-scaffold_56-1575043694:858684..860138 | Clytia hemisphaerica | exon |
| TCONS_00070487-exon-scaffold_56-1491911889:860379..860984 | TCONS_00070487-exon-scaffold_56-1491911889:860379..860984 | Clytia hemisphaerica | exon |
| TCONS_00070487-exon-scaffold_56-1510915933:860379..860984 | TCONS_00070487-exon-scaffold_56-1510915933:860379..860984 | Clytia hemisphaerica | exon |
| TCONS_00070487-exon-scaffold_56-1575043694:860379..860984 | TCONS_00070487-exon-scaffold_56-1575043694:860379..860984 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:858684..860984 + |
Blast
The following BLAST results are available for this feature:
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