TCONS_00070491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070491
Unique NameTCONS_00070491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1976

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070491 ID=TCONS_00070491|Name=TCONS_00070491|organism=Clytia hemisphaerica|type=transcript|length=1976bp
TTTTGATTCAAGTCTTGGATCGATGTCAACCGATTATACTTCCTTAAACT
ACATACGAATTGATTGGTAGATGGGTTTTTAATCACAGTAACTACTTGAA
AAATGGAGAAACTAGCATACCTTCTACTGATTGGTTACTTTATCAATACG
TCACAGTCACGTGATCAACAGCTGAACAATCGACCAATCATTGGCGTTCT
TGCACAACATTTTCATCCGGACGACCCGTTTCCTGTTCCGGGCGATTGTT
ACATTTCCGCATCATATGTTAAATATTTGGAGAGCGCCGGTGCCAGAGTT
GTGCCCATCAAGATCAATCAAAAACCTGaaatcattgaaaaattgttatC
AAGTGTGAACGGAGTTTTATTTCCAGGTGGCGATTCTGACGTCATGAACT
CCCCATTTCAACGGAACGCGAAAATGGCTTTTGAGTACGCCGTCAGTCAA
CGTAACGCGGGGAACTTTTTCCCCATTTGGGGCACGTGTATGGGTTTTCA
ACAACTGAGTGTATTAGTAGCCCAATCAAACGTTCTGTCGGCAATCAAAG
GAACTTGGGATAGACCAATGAAGTTGCCAGATCTTAACCGTGATGGGCGC
ATGATTCATGAAATGTCAGATGAAATTTTCGATGCCGTAAGATTTGAACC
GTTAACGTATAACGCACATTATAATTGTGTAAGCATGGATTCATACAAAA
AGAGTGAACACTTACAAAATTTCTTCAAGGTCTTGAGTACCAATGTGGAT
AGCAATGGTAAAGTTTTCATTTCCACCATGGAAGCGAATGATTTTCCAAT
CTACGCCGTTCAATGGCATCCAGAAATGAACAGTTTTGAATTCGACAACG
CAGAGGGTCTGGGACCTAATATACCTCACACTTCGAATGCAGTCCTATTG
GCGCAACACATGGCTAATTTCTTCGTTAATGAAGCGAAGaagaattttaa
taaatttgaaAGCAAAGAAGAAGAGCAGAAACATTTGATTTATAATTATC
AGACTGTCTTTTCGGCGAAATATAACGTTTTCGGTGAACAGAAATATGTC
TTTCGAACATAAAACCTACATACCAAGTGGAGAAGAGCATTCgaagagaa
aatttcaaaagaacacTGTTCTTACCAGACTTTGGTAAAATGAAGACTCG
TAGATATCGTATATATATAGATAAAGACtttcagcttttcaaaaatcatt
ttcttgaaaaaatattttctacatGGTATAGAGTTTGATAGCTGAATTTC
GCGATAAAATTGCTTGGTAATTATTCTCCTGCTTTTACAAGAACTAATGT
tcgacttgaatattttttaaacttaaaataaaatatcttATTGTCATACA
ATAgcataaaatttaaatttgtaaatttttagtTTAGAGCCATTTCTAAA
TAGGAGTCTCATTTTTCACTCCTGTCAAATCAAATAAGCAGCAATATTTT
GCAATAACTTCTGTCACAAATTTCTCGCTCTTCACAAGCCAATAAGTTCA
CCCGTATAAGTGTACAGTGGTACAGTTGTTTAAAAACCGGCCGGTTCTTT
TTTCGGTTCTTTTTCACTAGATCTATCCAGAAAGATCTCTAAAATGACCC
AATTTCTCCTAAAGAATAACGCAAGTGTTGTTCTCCTATTCCATTTTTGA
TTGGATAAACGTATCATCACCAGGGCGTGATTTGCTTGAAGACATTTCCA
TTAGGCGTTTGGGGCGGTTCAGAGGTAGAAGCGTGGTAATGATAAGAGTG
GGCGCGATTTCTTCGAGTTTTccatttccaccaatgagatttGAAGCATT
TGGAGAGAAAGATAGCGACGATTGTAATGAGGGAAAGAGCAGCCACACAT
GACAAACATATGATGATGATTTCATTTCGGTGTTTACGTTTACGCTCTTC
CTTCGCCTTTCTCCGTGATTCACTTCCATCTGTTAGAAAATGgagaaatt
aaattaaaagatTAAAAGAACATGGG
Run BLAST on NCBI

protein sequence of TCONS_00070491-protein

>TCONS_00070491-protein ID=TCONS_00070491-protein|Name=TCONS_00070491-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MEKLAYLLLIGYFINTSQSRDQQLNNRPIIGVLAQHFHPDDPFPVPGDCY
ISASYVKYLESAGARVVPIKINQKPEIIEKLLSSVNGVLFPGGDSDVMNS
PFQRNAKMAFEYAVSQRNAGNFFPIWGTCMGFQQLSVLVAQSNVLSAIKG
TWDRPMKLPDLNRDGRMIHEMSDEIFDAVRFEPLTYNAHYNCVSMDSYKK
SEHLQNFFKVLSTNVDSNGKVFISTMEANDFPIYAVQWHPEMNSFEFDNA
EGLGPNIPHTSNAVLLAQHMANFFVNEAKKNFNKFESKEEEQKHLIYNYQ
TVFSAKYNVFGEQKYVFRT
Run BLAST on NCBI

transcript from alignment at scaffold_56:865162..867617+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070491 ID=TCONS_00070491|Name=TCONS_00070491|organism=Clytia hemisphaerica|type=transcript|length=2456bp|location=Sequence derived from alignment at scaffold_56:865162..867617+ (Clytia hemisphaerica)
TTTTGATTCAAGTCTTGGATCGATGTCAACCGATTATACTTCCTTAAACT
ACATACGAATTGATTGGTAGATGGGTTTTTAATCACAGGTCAGTGATTGT
AGAAAAGTACAATCTAACAACTGTaaacatattttttaaattttgtgtaa
atttgaaaaaactaacaAGTTATTGAAAAGCAACTTTTAATCTTATCTGT
TAAATGTATTTTTCGAATTTCAGTAACTACTTGAAAAATGGAGAAACTAG
CATACCTTCTACTGATTGGTTACTTTATCAATACGTCACAGTCACGTGAT
CAACAGCTGAACAATCGACCAATCATTGGCGTTCTTGCACAACATTTTCA
TCCGGACGACCCGTTTCCTGTTCCGGGCGATTGTTACATTTCCGCATCAT
ATGTTAAATATTTGGAGAGCGCCGGTGCCAGAGTTGTGCCCATCAAGATC
AATCAAAAACCTGaaatcattgaaaaattgttatCAAGTGTGAACGGAGT
TTTATTTCCAGGTGGCGATTCTGACGTCATGAACTCCCCATTTCAACGGA
ACGCGAAAATGGCTTTTGAGTACGCCGTCAGTCAACGTAACGCGGGGAAC
TTTTTCCCCATTTGGGGCACGTGTATGGGTTTTCAACAACTGAGTGTATT
AGTAGCCCAATCAAACGTTCTGTCGGCAATCAAAGGAACTTGGGATAGAC
CAATGAAGTTGCCAGATCTTAACCGTGATGGGCGCATGATTCATGAAATG
TCAGATGAAATTTTCGATGCCGTAAGATTTGAACCGTTAACGTATAACGC
ACATTATAATTGTGTAAGCATGGATTCATACAAAAAGAGTGAACACTTAC
AAAATTTCTTCAAGGTCTTGAGTACCAATGTGGATAGCAATGGTAAAGTT
TTCATTTCCACCATGGAAGGTAAatgttctttgtttgtttgtttgtttgt
tttctacttttttctattttttactaaaatggAAGTGTTTCAGTGTCGCC
TTTTCGAGTCAGAATTTACTTCAAATTGAAATCACTTTAACAATATTTCG
CTGACAATATTTTTTTGACATAAAGTTTAGTTTTGAAACACCCAAACTTA
CAATAAAATCTATGATGGTCGACTTCAAGAATATTGCAAAGGAATGCCAA
ACCGAGGACTCAGACTATTTTGAATCATGAGCAAATTTATCCAGCAAAAC
CCaaacaaaacttaaattttgcttGTTTGGCAAGGTAGTTAAAAAAATCC
TCTTACAATTTCAGCGAATGATTTTCCAATCTACGCCGTTCAATGGCATC
CAGAAATGAACAGTTTTGAATTCGACAACGCAGAGGGTCTGGGACCTAAT
ATACCTCACACTTCGAATGCAGTCCTATTGGCGCAACACATGGCTAATTT
CTTCGTTAATGAAGCGAAGaagaattttaataaatttgaaAGCAAAGAAG
AAGAGCAGAAACATTTGATTTATAATTATCAGACTGTCTTTTCGGCGAAA
TATAACGTTTTCGGTGAACAGAAATATGTCTTTCGAACATAAAACCTACA
TACCAAGTGGAGAAGAGCATTCgaagagaaaatttcaaaagaacacTGTT
CTTACCAGACTTTGGTAAAATGAAGACTCGTAGATATCGTATATATATAG
ATAAAGACtttcagcttttcaaaaatcattttcttgaaaaaatattttct
acatGGTATAGAGTTTGATAGCTGAATTTCGCGATAAAATTGCTTGGTAA
TTATTCTCCTGCTTTTACAAGAACTAATGTtcgacttgaatattttttaa
acttaaaataaaatatcttATTGTCATACAATAgcataaaatttaaattt
gtaaatttttagtTTAGAGCCATTTCTAAATAGGAGTCTCATTTTTCACT
CCTGTCAAATCAAATAAGCAGCAATATTTTGCAATAACTTCTGTCACAAA
TTTCTCGCTCTTCACAAGCCAATAAGTTCACCCGTATAAGTGTACAGTGG
TACAGTTGTTTAAAAACCGGCCGGTTCTTTTTTCGGTTCTTTTTCACTAG
ATCTATCCAGAAAGATCTCTAAAATGACCCAATTTCTCCTAAAGAATAAC
GCAAGTGTTGTTCTCCTATTCCATTTTTGATTGGATAAACGTATCATCAC
CAGGGCGTGATTTGCTTGAAGACATTTCCATTAGGCGTTTGGGGCGGTTC
AGAGGTAGAAGCGTGGTAATGATAAGAGTGGGCGCGATTTCTTCGAGTTT
TccatttccaccaatgagatttGAAGCATTTGGAGAGAAAGATAGCGACG
ATTGTAATGAGGGAAAGAGCAGCCACACATGACAAACATATGATGATGAT
TTCATTTCGGTGTTTACGTTTACGCTCTTCCTTCGCCTTTCTCCGTGATT
CACTTCCATCTGTTAGAAAATGgagaaattaaattaaaagatTAAAAGAA
CATGGG

Coding sequence (CDS) from alignment at scaffold_56:865162..867617+

>TCONS_00070491 ID=TCONS_00070491|Name=TCONS_00070491|organism=Clytia hemisphaerica|type=CDS|length=1920bp|location=Sequence derived from alignment at scaffold_56:865162..867617+ (Clytia hemisphaerica)
ATGGAGAAACTAGCATACCTTCTACTGATTGGTTACTTTATCAATACGTC
ACAGTCACGTGATCAACAGCTGAACAATCGACCAATCATTGGCGTTCTTG
CACAACATTTTCATCCGGACGACCCGTTTCCTGTTCCGGGCGATTGTTAC
ATTTCCGCATCATATGTTAAATATTTGGAGAGCGCCGGTGCCAGAGTTGT
GCCCATCAAGATCAATCAAAAACCTGaaatcattgaaaaattgttatCAA
GTGTGAACGGAGTTTTATTTCCAGGTGGCGATTCTGACGTCATGAACTCC
CCATTTCAACGGAACGCGAAAATGGCTTTTGAGTACGCCGTCAGTCAACG
TAACGCGGGGAACTTTTTCCCCATTTGGGGCACGTGTATGGGTTTTCAAC
AACTGAGTGTATTAGTAGCCCAATCAAACGTTCTGTCGGCAATCAAAGGA
ACTTGGGATAGACCAATGAAGTTGCCAGATCTTAACCGTGATGGGCGCAT
GATTCATGAAATGTCAGATGAAATTTTCGATGCCGTAAGATTTGAACCGT
TAACGTATAACGCACATTATAATTGTGTAAGCATGGATTCATACAAAAAG
AGTGAACACTTACAAAATTTCTTCAAGGTCTTGAGTACCAATGTGGATAG
CAATGGTAAAGTTTTCATTTCCACCATGGAAGCGAATGATTTTCCAATCT
ACGCCGTTCAATGGCATCCAGAAATGAACAGTTTTGAATTCGACAACGCA
GAGGGTCTGGGACCTAATATACCTCACACTTCGAATGCAGTCCTATTGGC
GCAACACATGGCTAATTTCTTCGTTAATGAAGCGAAGaagaattttaata
aatttgaaAGCAAAGAAGAAGAGCAGAAACATTTGATTTATAATTATCAG
ACTGTCTTTTCGGCGAAATATAACGTTTTCGGTGAACAGAAATATGTCTT
TCGAACATAAATGGAGAAACTAGCATACCTTCTACTGATTGGTTACTTTA
TCAATACGTCACAGTCACGTGATCAACAGCTGAACAATCGACCAATCATT
GGCGTTCTTGCACAACATTTTCATCCGGACGACCCGTTTCCTGTTCCGGG
CGATTGTTACATTTCCGCATCATATGTTAAATATTTGGAGAGCGCCGGTG
CCAGAGTTGTGCCCATCAAGATCAATCAAAAACCTGaaatcattgaaaaa
ttgttatCAAGTGTGAACGGAGTTTTATTTCCAGGTGGCGATTCTGACGT
CATGAACTCCCCATTTCAACGGAACGCGAAAATGGCTTTTGAGTACGCCG
TCAGTCAACGTAACGCGGGGAACTTTTTCCCCATTTGGGGCACGTGTATG
GGTTTTCAACAACTGAGTGTATTAGTAGCCCAATCAAACGTTCTGTCGGC
AATCAAAGGAACTTGGGATAGACCAATGAAGTTGCCAGATCTTAACCGTG
ATGGGCGCATGATTCATGAAATGTCAGATGAAATTTTCGATGCCGTAAGA
TTTGAACCGTTAACGTATAACGCACATTATAATTGTGTAAGCATGGATTC
ATACAAAAAGAGTGAACACTTACAAAATTTCTTCAAGGTCTTGAGTACCA
ATGTGGATAGCAATGGTAAAGTTTTCATTTCCACCATGGAAGCGAATGAT
TTTCCAATCTACGCCGTTCAATGGCATCCAGAAATGAACAGTTTTGAATT
CGACAACGCAGAGGGTCTGGGACCTAATATACCTCACACTTCGAATGCAG
TCCTATTGGCGCAACACATGGCTAATTTCTTCGTTAATGAAGCGAAGaag
aattttaataaatttgaaAGCAAAGAAGAAGAGCAGAAACATTTGATTTA
TAATTATCAGACTGTCTTTTCGGCGAAATATAACGTTTTCGGTGAACAGA
AATATGTCTTTCGAACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043885XLOC_043885Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070491-proteinTCONS_00070491-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070491-exon-scaffold_56-1491911889:865162..865249TCONS_00070491-exon-scaffold_56-1491911889:865162..865249Clytia hemisphaericaexon
TCONS_00070491-exon-scaffold_56-1510915933:865162..865249TCONS_00070491-exon-scaffold_56-1510915933:865162..865249Clytia hemisphaericaexon
TCONS_00070491-exon-scaffold_56-1575043694:865162..865249TCONS_00070491-exon-scaffold_56-1575043694:865162..865249Clytia hemisphaericaexon
TCONS_00070491-exon-scaffold_56-1491911889:865385..866080TCONS_00070491-exon-scaffold_56-1491911889:865385..866080Clytia hemisphaericaexon
TCONS_00070491-exon-scaffold_56-1510915933:865385..866080TCONS_00070491-exon-scaffold_56-1510915933:865385..866080Clytia hemisphaericaexon
TCONS_00070491-exon-scaffold_56-1575043694:865385..866080TCONS_00070491-exon-scaffold_56-1575043694:865385..866080Clytia hemisphaericaexon
TCONS_00070491-exon-scaffold_56-1491911889:866426..867617TCONS_00070491-exon-scaffold_56-1491911889:866426..867617Clytia hemisphaericaexon
TCONS_00070491-exon-scaffold_56-1510915933:866426..867617TCONS_00070491-exon-scaffold_56-1510915933:866426..867617Clytia hemisphaericaexon
TCONS_00070491-exon-scaffold_56-1575043694:866426..867617TCONS_00070491-exon-scaffold_56-1575043694:866426..867617Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:865162..867617 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0723009	0.0875417	0.0825419	0.0971493	0.0905523	0.041384	0.373989	0.183721	2.29042	1.01794	3.49095	0.960511	3.15977	2.63653	9.15107	6.59545	7.59205	6.53667	4.98418	4.23427	7.42282	7.81219	5.18332	5.85726	4.82294	4.87792	0.908403	0.937417	11.3774	9.1704
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029062Class_I_gatase-like
IPR011697Peptidase_C26
IPR015527Pept_C26_g-glut_hydrolase
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003824catalytic activity
GO:0008242omega peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006541glutamine metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006541 glutamine metabolic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0008242 omega peptidase activity
Blast
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BLAST of TCONS_00070491 vs. Swiss-Prot (Human)
Match: GGH (Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 6.181e-55
Identity = 121/294 (41.16%), Postives = 182/294 (61.90%), Query Frame = 1 
Query:  181 RPIIGVLAQHFHPDDPFPVPGDCYISASYVKYLESAGARVVPIKINQKPEIIEKLLSSVNGVLFPGGDSDVMNSPFQRNAKMAFEYAVSQRNAGNFFPIWGTCMGFQQLSVLVAQSNVLSAIKGTWD--RPMKLPDLNRDGRMIHEMSDEIFDAVRFEPLTYNAHYNCVSMDSYKKSEHLQNFFKVLSTNVDSNGKV-FISTMEANDFPIYAVQWHPEMNSFEFDNAEGLGPNIPHTSNAVLLAQHMAXXXXXXXXXXXXXXXXXXXXQKHLIYNYQTVFSAKYNVFGEQKYVF 1053
            +PIIG+L Q    +      G  YI+ASYVKYLESAGARVVP++++   +  E L  S+NG+LFPGG  D+  S + + AK+ +  ++   + G++FP+WGTC+GF++LS+L++   +L+A   T D   P+         RM      E+  ++  EPLT N H   +S+ ++  +E L+ FF VL+TN D  GK+ FISTME   +P+Y VQWHPE   +E+ N +G    I H  NAV  A ++A FFVNEA+KN + F+S+ EE+K LIY +  +++   + F +Q Y+F
Sbjct:   33 KPIIGILMQKCR-NKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATD-TVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTD--GKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDG----ISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYTGNISSF-QQCYIF 317
The following BLAST results are available for this feature:
BLAST of TCONS_00070491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GGH6.181e-5541.16Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE... [more]
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