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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070502 ID=TCONS_00070502|Name=TCONS_00070502|organism=Clytia hemisphaerica|type=transcript|length=975bp AGAGAAGAGAGGTGGAGAAAAAAATAGGGTGAATCGAAttcagaaaagaa aaagtaaggGGGCGACGGGCGGTTGGAAATTAATTGTATTTGTTCGGTTC CgcaaattacaaacaaaaatgGCTGCAAAGGACCCGTAAACTTGACCCGC AATTTCAGTGATTCCTTTACAAACTTGTTCAAGAAATTTGGTTACTGGAA TTATACCATAAAAAGAGTGGAGGACCTCACAAGCTAACATTACCTTCACA ATCAACGAGTCAACATGGTCGTTCCAACACAAAAGAGGAAGCTCATCAAA AAGCGAACCAAAAGATTTATTCGTCATCAATCTGACCGATATGTTAAGGT CGCAGAAAGCTGGAGAAAACCAAAGGGTATTGATAACAGAGTCAGACGAC GATTCAAGGGGCAATATTTGATGCCAAACATCGGTTATGGAACTAACGCT AAAACCAGACATTGTATGCCTGATGGCTTCAAGAAATTTGTCGTTCACAA CCAAAAAGAATTAGAACTCCTCCTCATGCTTAAAGGAACATACGCCGCAG AAATCGCACACAACGTTTCCGCCCGTAAACGAAAAGACATTGTTGAACGT GCCAATCAACTTTCAATTAAAGTAACCAACGCCACCGCCAGATTAAGGTC TGAGGAAAACGAATAAATTAATACAAAAAAATCTtgaacaaaaattgatt tgtCTCATTTTATTGAAGCTTATTGAAGGGTGGTAGAACTGCTTTCAGAA ATGCATGTTTCAATCTTGGGGAAAAAGGTTTGCATTTCCTGGCATTTCTA CCATCCTTCAGTATTATCCAAGAATTGTTGAATAAACCAGAATGAGCCCT TTGAGGTAGGCTTAAAACAGCAAAATGACCTAATTTACAGTGCTACAGGG GCGTTTACTAGAAACTTGTATGACTTAAATACTTTGATACAAGTTCTGAT TAGgattgaaaaggaagattttagt Run BLAST on NCBI protein sequence of TCONS_00070502-protein >TCONS_00070502-protein ID=TCONS_00070502-protein|Name=TCONS_00070502-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MVVPTQKRKLIKKRTKRFIRHQSDRYVKVAESWRKPKGIDNRVRRRFKGQ YLMPNIGYGTNAKTRHCMPDGFKKFVVHNQKELELLLMLKGTYAAEIAHN VSARKRKDIVERANQLSIKVTNATARLRSEENE Run BLAST on NCBI transcript from alignment at scaffold_56:160841..167565- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070502 ID=TCONS_00070502|Name=TCONS_00070502|organism=Clytia hemisphaerica|type=transcript|length=6725bp|location=Sequence derived from alignment at scaffold_56:160841..167565- (Clytia hemisphaerica) AGAGAAGAGAGGTGGAGAAAAAAATAGGGTGAATCGAATTCAGAAAAGAA
AAAGTAAGGGGGCGACGGGCGGTTGGAAATTAATTGTATTTGTTCGGTTC
CGCAAATTACAAACAAAAATGGCTGCAAAGGACCCGTAAACTTGACCCGC
AATTTCAGTGATTCCTTTACAAACTTGTTCAAGAAATTTGGTTACTGGAA
TTATACCATGTAAGTTTATCGTCGAAATTCTGGATAATCTCATGATTTTG
TATGCTGGATGAGTATCATATGCATTGCAGAATAGTTGAAGGTCCTTATG
GATGAAAAATTTTGGCTTACTTAATGCTATTGGCATTGTTATGCAGCTTT
GTTTACATCACATTGGAGTTGGCATATTTTCTGTAATGGAGACTGATAGT
GTATAATTTTGGTATATGAATGTTTGGTTTTGAAAGGAATGAATTTCAGC
TTCGGTTTGAGAAATTGCTCTTCTACTTCTCCAAGTAAATTGTTACTGAG
CCTGTCAAAGGCTGATTGAGTTGGTTGTTTGATCTTTAACAGCATTTTTT
TTGTTGATTGGGATTCTGTTCTCAGTGGTATTTTACTGTATTATTCTTGA
TGATCTATCAACGAATTTAACAGATTGCTTGGGTTTTTTGTTTCATGTTC
TCACTGTTAAGTCAAAGATAAACAAGGCTAAAGGAGGGGGAAAAGCTCAC
TGTTGTAGTCATTGGGTCATCCCAGAAAATTTTTGTTACCCCCCATTGGA
AGACGTCCATTTAAAAATTTTTTTAGCCTCAAAAATAATTTTTCTTTTCC
AGTGGTGGTCCGAAATTCCGATGAAAATCCATGTATTTTTGCAAAATACA
TCGGAAATTCGCTTTTAAAACATCAATTGATGTTTTTCTAACCTAAAATC
AATTTGTGAGAGACCCCTAAGAAAGTGGATGATTTAAGTTCGACCAAACA
TACAATGTTCATCACATTCAGCAAAAACTATGTTCAACAGAGTTCAATTA
CAAATTCTATAATAAATTAAATGTTGGACAAAGTTGGACAACAAAGATTA
AAGCTGGAAATTACGAAATAGAAAATTAGAAAGAAATTTGTGAATATCAT
TCAGTTTGTTTTTTTCGTGTTAAATTATAAATATGAAATGTACATCCAAA
ATAATTAAAATAATCATGTGACAAAACAAAGCCAGGTTAAGGGGTTTTAG
GTTTAAGACCTGTGTACATGTCCAGACAGTGTCAATCGAACAAAAATCGC
AATCGAACCAATCGAACGTAATCGAACGCGATCGAATAATTGCAATTCGA
TGGTCGAACGTAATCGAATCTCAATCGAACGGCCGAATCCTGGGTAATAT
TCGATTGTGTTCGATTGCGTTTGAATAAGGTAGATTGGTTCGATTAATAG
TTGAACTATTTTCGATTGTCATTTGCATTTGATTTCGATTGATTAGACTA
GAGGATTCTGTTTGATGAGTTTGATTGAATTAAATTGGATCACTCTGTTA
GGGCTTTTTAGGGTTTAGCGGGTGACCGAGTGCTAAAAGTACCGTAGCAA
AGCGAATGAAATCTAATATAATTGAATCAATCGAACGTAATCGAATACAA
TCGAACGTAATCGAAGCAATCGAAAAGCAAATCCTGGGTTATATTCGATT
GCAATTCGATTGCGTTCAATTGATTCGACGTTCGATTCGTTGGATTGACA
CCGTCTGGACATGTGTAACATTTAGCCACAGATTTTAAAAACATCAAACA
TAAAACCCTATCCCATTAGGGAGGGGTCACCCACATATCAATGTTTCCTG
CAACTAACGTCATTGTGAGTGATGCGAGGGGACGGGGGGTCAGAGCCCAT
GACGCTAAGAAATTTCAACAGAATATCGATTTGCAAACCTGTAACATTTT
GTATTCCATCCTTCGCTACACCTGCCATCTTAATTCAAATGCATAAAATA
TAACAGATGATATCCAATACCCTTCCGTTACGTTTGTAGGAATATGTTAT
TATCTCCCTAATCATAAAAACAGAGATACCGCAATAAAAAATAGATGGGC
CGTATTTTGATATACAAGGGCCGCGCTGACAGACCATCTACATAGATATG
ACGAAACAACGAGCCCTTTGTCTGGGGACAAACAAATGTGAAAGTCACAA
GTCAAAACCATTTGTTTTAAAACCGTGCGAAACAAAGCACAAAAATCAAT
GTGACTGGAATATCAATATCTGTAATAGAGAAGAAAAATTACTTTCATCG
ATTTTTGTTATATTTATGTAAATAATGCTAAGAAAGGGGGGTGGGGTTCT
TCAGATAGCGTCACAATGACGTTAATTGCAGGAAAAATCGATATGCGAGT
GACCCCTTAAATGTCAAATTGATGTTGTTGGTGTTTTTTGTGGTACAATG
AGTATTGATGTCACTCCTTATCAGAATCTCTGGGAAAAGAACCAAATCAG
TATAAGGTTTCTTATTGTAACAAATGTGAATAAATTTTAGGAATAGTTTC
AACTTTCCCTTTCTGAATCGCACATGGTATTGCATCTCAATGCTCTACTG
TGTTGAACCGTGAAAGGAGATCAGTTGCACTCTCCCATTTTATTACACCT
TTCTAATAGGTGATATAAAAGTAAAGAGTTCAACAAAATTGTTTTTTTTT
TCTTTCAAATTGAATGAAAATTAGTCTCAAGCTTTTTTATATTCAAGATT
GTCAAGTTGGTCGATTTTCTCTATGGGACGTCAGATATCTAGTAAAGCTA
GTGCCTTGAATATGAGGGAATGTTGATTATTTTACAGACTTAATGCTTTG
AACGGATTTGAGGAAATTTACTAGATTTTAGATCCTTTAAGTTTAAGGCC
TCCTTTGTTCCATGAATTGCAGAATTGTTTTTGAATTTTTTCCGTGGCTT
TTTTTAAGAACTGACAATGTAAAATGTAACTGCATTTTCTATATTTTTTT
CAATCTTTCTCTATTAGAAAAAGAGTGGAGGACCTCACAAGCTAACATTA
CCTTCACAATCAACGGTAACTTATTTTCTTTTGATATTCACTACGGGCTT
GGTTGAACGTTTAGTATTTATCAATATAACATGGCTCAAATGAGAATTCA
ACGTAAAGATTTTCTTCAAGAGTAACGAGAAGACAGCCTGTAATTTCAGA
TTGCATTTCAGGATTTCTAGATGAATCTTTAGATGGATGTTGATACCATT
TGATAGAAACATTTTTGACAACTTTGATTTGAATCTTTAAAATTCTCTCT
ATGATAGCTATGCTTGGATTATGTTTAAATTCGCATGCCAAATTATGTCA
AAGTCTGTTTAAGCTTGATGATTGATAGGTCTCCTTTCTGAATCGCACAT
GGTATTGCATCTCAATGCTCTACTGTGTTGAACCGTGAAAGGAGATCAGT
TGCACTCTCCCATTTTATTACACCTTCTTAATAGGTGATATAAAAGTAAA
GAGTTTGACAAAAGATTTTTCCTCTCAAATGAAATTTAGATTGATTTTGA
ACTTAAAATCTGTAGTGCCCCTAATGTTGATCTCTGTCTTAATGACAGAT
GCGATAAACAGAGATTTAAATGAAATTAATGAGGCTCATATCTTCAGTTT
ACCTTAATTTGTTAACCCGTCTGGAAAGCACCTTCTTTATGCAAGACTTG
CAATTATATACAAGGTCGTCAAATGAAGGAGATAAATTGCTTCATGGGTG
TGGTCTGGCTTACTATAGTAGCTATGAACAGCAATTATGGAGTAAACACT
TATGACTTAAGCTTTGCTGTCTTCCAAATTTTCTTTATTCAGCTTCCCTA
AAAGCAGTGCTGCAGATAAGGAATAGACCTTTTCAAAAATTACATCACAA
ACCTGCACGAACATCACTTGCCTCGTATTCAAACAATTACCATGGTAATT
ATGTCCCTGGGATAAACAGATTTAAATGAAATTAACGAGGCTCATATTTT
CAGTCTACCTCAGTTTTGTTAACCCTTCTGTAAAGCACCTTCTTTATGCA
AGACTTGCAATTATATACAAGGTCGTCAAATGAAGGAGATAAATTGCTTC
ATGGGTGTGGTCTGGCTTACTATAGTAGCTATGAACAGCAATTATGGAGT
AAACACTTATGACTTAAGCTTTGCTGTCTTCCAAATTTTCTTTATTCAGC
TTCCCTAAAAGCAGTGCTGCAGATAAGGAATAGACCTTTTCAAAAATTAC
GTCACAAACCTGCACGAACATCACTTGCCTCGTATTCAAACAATTACCAT
GGTAATTATGTCCCTGGGATAAATAGATTTAAATGAAATTAAAGAGGCTC
ATATTTTCAGTTTACCTCAGTTTTGTTAACCCTTCTGTAAAGCACCTTCT
TTATGCAAGACTTGCAATTATATACAAGGTCGTCAAATGAAGGAGATAAA
TTGCTTCATGGGTGTGGTCTGGCTTACTATAGTAGCTATGAACAGCAATT
ATGGAGTAAACACTTATGACTTTGATGTCTTTTCTTTATTCAGCATCCGT
AAAAGCAGATAAGGAATTGAGATAAGTGTAGTGAGAAAAAGCTCCTTATG
ATGATAGGAAGATATAACAAATAATAAATAAAACAGAGCATGGACAAAAA
TTGATTCGTTACATTTTTCGACAAGGAATCTCAAGCTTCAATGACAAAAG
TAAAATTAGACCTTTAAAAATGATGGGTTGATTTGCAGCACAGCCTAAAA
TAGATAGAGTTTTCAAAAGAAAAAACTAATTAAAATAGTCCATAGCCACA
TTCTTTTTCACCACTGTTCAGGTACTTTGCGTTTTCAAATTGAGAATCCG
ATTTATATTTTGAAAGAGTAACGACGTGTTAAGCTGTAACGAAACTTAAA
ATCTAAACTTGTTGATGTATTATAGGTTTTCTCTATTAATACATCAAACC
CAGGTATATTTATTTTCCGATTTACTTCATTGCAGAGTCAACATGGTCGT
TCCAACACAAAAGAGGAAGCTCATCAAAAAGCGAACCAAAAGATTTATTC
GTCATCAATCTGACCGATATGTTAAGGTCGCAGAAAGCTGGAGAAAACCA
AAGGGTATTGATAACAGAGTCAGACGACGATTCAAGGGGCAATATTTGAT
GCCAAACATCGGTTATGGAACTAACGCTAAAACCAGACATTGTATGCCTG
ATGGCTTCAAGAAATTTGTCGTTCACAACCAAAAAGTAAGTTATTTATTG
TAATTGTTTCTGATTTGGCCAGCTGATTTTCTTTTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCC
CCCCCCCCCTAGGCCGAATAGGGTTAAACAAAATTAGAAGGCAAATGTGA
TTGTGATCGTTTATCACGGGACAAGCTGGAGTTTTTACAAGCTCTTTTTT
GATTTGGTTGGTCGTTAAGATGTAATAAAAGAATGCTATTACTTTTTCTA
AAGAACGCGTAATCTCTATCACTTTAAATGACCAATTAGTGAAGTATCTT
GTAAAAACTCCAAGGCATCTCTTTATCACACCCTTCTGTTACGATCAACA
TTGAGAGTTCCCCAAGTTTGAAACATGCAGTGAAAAGCAGTCAGTTAAAA
CTTACAAACAGAAAATTCCTAAACCTAATTGTTTTCTTTTCGTTTCTTTC
ACTTTAGGAATTAGAACTCCTCCTCATGCTTAAAGGAACATACGCCGCAG
AAATCGCACACAACGTTTCCGCCCGTAAACGAAAAGACATTGTTGAACGT
GCCAATCAACTTTCAATTAAAGTAACCAACGCCACCGCCAGATTAAGGTC
TGAGGAAAACGAATAAATTAATACAAAAAAATCTTGAACAAAAATTGATT
TGTCTCATTTTATTGAAGCTTATTGAAGGGTGGTAGAACTGCTTTCAGAA
ATGCATGTTTCAATCTTGGGGAAAAAGGTTTGCATTTCCTGGCATTTCTA
CCATCCTTCAGTATTATCCAAGAATTGTTGAATAAACCAGAATGAGCCCT
TTGAGGTAGGCTTAAAACAGCAAAATGACCTAATTTACAGTGCTACAGGG
GCGTTTACTAGAAACTTGTATGACTTAAATACTTTGATACAAGTTCTGAT
TAGGATTGAAAAGGAAGATTTTAGT Coding sequence (CDS) from alignment at scaffold_56:160841..167565- >TCONS_00070502 ID=TCONS_00070502|Name=TCONS_00070502|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_56:160841..167565- (Clytia hemisphaerica) GAATTAGAACTCCTCCTCATGCTTAAAGGAACATACGCCGCAGAAATCGC ACACAACGTTTCCGCCCGTAAACGAAAAGACATTGTTGAACGTGCCAATC AACTTTCAATTAAAGTAACCAACGCCACCGCCAGATTAAGGTCTGAGGAA AACGAATAAATGGTCGTTCCAACACAAAAGAGGAAGCTCATCAAAAAGCG AACCAAAAGATTTATTCGTCATCAATCTGACCGATATGTTAAGGTCGCAG AAAGCTGGAGAAAACCAAAGGGTATTGATAACAGAGTCAGACGACGATTC AAGGGGCAATATTTGATGCCAAACATCGGTTATGGAACTAACGCTAAAAC CAGACATTGTATGCCTGATGGCTTCAAGAAATTTGTCGTTCACAACCAAA AAGAATTAGAACTCCTCCTCATGCTTAAAGGAACATACGCCGCAGAAATC GCACACAACGTTTCCGCCCGTAAACGAAAAGACATTGTTGAACGTGCCAA TCAACTTTCAATTAAAGTAACCAACGCCACCGCCAGATTAAGGTCTGAGG AAAACGAATAAATGGTCGTTCCAACACAAAAGAGGAAGCTCATCAAAAAG CGAACCAAAAGATTTATTCGTCATCAATCTGACCGATATGTTAAGGTCGC AGAAAGCTGGAGAAAACCAAAGGGTATTGATAACAGAGTCAGACGACGAT TCAAGGGGCAATATTTGATGCCAAACATCGGTTATGGAACTAACGCTAAA ACCAGACATTGTATGCCTGATGGCTTCAAGAAATTTGTCGTTCACAACCA AAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00070502-exon-scaffold_56-1575043694:167357..167565 | TCONS_00070502-exon-scaffold_56-1575043694:167357..167565 | Clytia hemisphaerica | exon |
TCONS_00070502-exon-scaffold_56-1575043694:164551..164598 | TCONS_00070502-exon-scaffold_56-1575043694:164551..164598 | Clytia hemisphaerica | exon |
TCONS_00070502-exon-scaffold_56-1575043694:162381..162630 | TCONS_00070502-exon-scaffold_56-1575043694:162381..162630 | Clytia hemisphaerica | exon |
TCONS_00070502-exon-scaffold_56-1575043694:160841..161308 | TCONS_00070502-exon-scaffold_56-1575043694:160841..161308 | Clytia hemisphaerica | exon |
TCONS_00070502-exon-scaffold_56-1510915933:167357..167565 | TCONS_00070502-exon-scaffold_56-1510915933:167357..167565 | Clytia hemisphaerica | exon |
TCONS_00070502-exon-scaffold_56-1510915933:164551..164598 | TCONS_00070502-exon-scaffold_56-1510915933:164551..164598 | Clytia hemisphaerica | exon |
TCONS_00070502-exon-scaffold_56-1510915933:162381..162630 | TCONS_00070502-exon-scaffold_56-1510915933:162381..162630 | Clytia hemisphaerica | exon |
TCONS_00070502-exon-scaffold_56-1510915933:160841..161308 | TCONS_00070502-exon-scaffold_56-1510915933:160841..161308 | Clytia hemisphaerica | exon |
TCONS_00070502-exon-scaffold_56-1491911889:167357..167565 | TCONS_00070502-exon-scaffold_56-1491911889:167357..167565 | Clytia hemisphaerica | exon |
TCONS_00070502-exon-scaffold_56-1491911889:164551..164598 | TCONS_00070502-exon-scaffold_56-1491911889:164551..164598 | Clytia hemisphaerica | exon |
TCONS_00070502-exon-scaffold_56-1491911889:162381..162630 | TCONS_00070502-exon-scaffold_56-1491911889:162381..162630 | Clytia hemisphaerica | exon |
TCONS_00070502-exon-scaffold_56-1491911889:160841..161308 | TCONS_00070502-exon-scaffold_56-1491911889:160841..161308 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_56 | supercontig | scaffold_56:160841..167565 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
Term | Definition |
GO:0005622 | intracellular |
GO:0005840 | ribosome |
Vocabulary: Molecular Function
Term | Definition |
GO:0003735 | structural constituent of ribosome |
Vocabulary: Biological Process
Term | Definition |
GO:0006412 | translation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006412 |
translation |
cellular_component |
GO:0005622 |
intracellular |
cellular_component |
GO:0005840 |
ribosome |
molecular_function |
GO:0003735 |
structural constituent of ribosome |
Blast
BLAST of TCONS_00070502 vs. Swiss-Prot (Human)
Match: RL32 (60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2) HSP 1 Score: 202.216 bits (513), Expect = 6.311e-64 Identity = 94/130 (72.31%), Postives = 111/130 (85.38%), Query Frame = 1
Query: 274 PTQKRKLIKKRTKRFIRHQSDRYVKVAESWRKPKGIDNRVRRRFKGQYLMPNIGYGTNAKTRHCMPDGFKKFVVHNQKELELLLMLKGTYAAEIAHNVSARKRKDIVERANQLSIKVTNATARLRSEENE 663
P K K++KKRTK+FIRHQSDRYVK+ +WRKP+GIDNRVRRRFKGQ LMPNIGYG+N KT+H +P GF+KF+VHN KELE+LLM +Y AEIAHNVS++ RK IVERA QL+I+VTN ARLRSEENE
Sbjct: 6 PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
The following BLAST results are available for this feature:
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