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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070532 ID=TCONS_00070532|Name=TCONS_00070532|organism=Clytia hemisphaerica|type=transcript|length=982bp
tttttttaatggtgAATAATGCCTACGAAAGgttgaaatttccttatttc
CCTGCTGCTAACATTGAAACCAAGAATTATAAGTTTCAATCAGGGATCAC
TGCAGGTCACGTCCTTGAAACTGTCAAGAAACTGCAAAACATGTGGACAC
TCAAACTCGCCATCATTCCCGTCAAAACACAAAACGGTGACACAAGCATT
CTCCACGCTACACCTTACTTCGATAGCCGTACAGTGGGAGAACTAAAAAT
CGATTTCCTTGATAAAACAACCAGGCTTCGTATCTGTGTACCGTCGCTCT
CGACATCTTATACACCCTACTGCATCACATTCCCACGCTCCTTACCACTA
AGCAAGTTGGCAAAGATCCAGATTCGCCGTCGACCAGCAGTCTCTGGAAC
TGATTACATTATCCATTTGAACGGGGAACAGAAATACAAGTTTAACGATC
CAACACCAAATAAAGTTGATGATGTAAATATGTATCTCTCTGATCCTTTC
ATGGCGCCCGCTAATGCTGTTCTGGAAGCATACCAATTCAATAATGGCGT
TCAGAAAGGTCACGTCATAGATGAAAAATCCAGTCTCGGCCCAGCCTGGA
AACTCAATCTTAAGATCACCATAACCAACACACAGCATACGGGCTGGATC
AACATTCTACACGCTGTCAACAATGGTGTCTCAAGTGATttattgtttta
tgttttcattCAACCGAGAACAACACGCCCATACATCTGTACCGCCCTCA
AACAAGGTGGCGCCAACCTATGTACATCCACGTCATCGCTATCCTTGAAT
AGACCAACTTTGATTGAAATAGATCATTTTCAATCTTCTGGGAAATATTA
CTATCAGATGACTGTTGGTGGACAAGCAGTGTATTTGGATGCGAGCAAAA
GGCGACCAAAACCCATTCTGAATGCAAATCCAAGGACATTTGAAAATGTG
GTTGTTTATGCGTCAAGCCCTTACTATAACAA Run BLAST on NCBI transcript from alignment at scaffold_56:557783..559853- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070532 ID=TCONS_00070532|Name=TCONS_00070532|organism=Clytia hemisphaerica|type=transcript|length=2071bp|location=Sequence derived from alignment at scaffold_56:557783..559853- (Clytia hemisphaerica)
TTTTTTTAATGGTGAATAATGCCTACGAAAGGTTGAAATTTCCTTATTTC
CCTGCTGCTAACATTGAAACCAAGAATTATAAGTTTCAATCAGGTAACTC
TCTAGTTTTTGGGTGTGCTTCCAGCACGTGTCGAAAATTCTAAATTTTTT
TAATGGTGAATAATGCCTACGAAAGGTTGAAATTTCCTTATTTCCCTGCT
GGTAACATTGAAACCAAGAATTATAAGTTTCAATCAGGTAACTCTCTAGT
TTTTGGGTGTGCTTCCAGCACGTGTCGAAAATTCGAACTTCTTTTAGTGG
TGAATAATGCCTACGAAAGGTTGAAATATCCTTATTTCCCTGCTGCTAAC
ATTGAAACCAAGAATTATAAGTTTCAATCAGGTAACTCTCTGTTTTTTGG
GTGTGCTTCCAGCACGTGTCGAAAATTCGAATTTTTTTTAATGGTGAATA
ATGCCTACGAAAGGTTGAAATATCCTTATTTCCCTGCTGCTAACACATTG
AAACCAAGAATTATAAGTTTCAATCAGGTAACTCTCTGTTTTTTGGTGTG
TCTCCAGCACGTGTAAATTTCAGTCAGGTAATTCTAACTTCTGAGAAACT
GAACTTCAACTTTTGTTCAAACAAGTCAAATAACTACAAAAAAAGGATTT
CTATAGGAAAGTTTTTTATTTCATTCCAAAAGACTTCATTCAGATGTTAT
AATAATATTAAGCCGCCGTTTCAAACCAATAATTTTTTGTCCGCTTAGTT
TTAGTTTAATAGAGATCTAAAAAGAGTGTTCTCTAGTATACGGTAAAAAA
AATAATATTGAACACTATTCTTTAAACTTCTACAATTCTTCATCTTAGGG
ATCACTGCAGGTCACGTCCTTGAAACTGTCAAGAAACTGCAAAACATGTG
GACACTCAAACTCGCCATCATTCCCGTCAAAACACAAAACGGTGACACAA
GCATTCTCCACGCTACACCTTACTTCGATAGCCGTACAGTGGGAGAACTA
AAAATCGATTTCCTTGATAAAACAACCAGGCTTCGTATCTGTGTACCGTC
GCTCTCGACATCTTATACACCCTACTGCATCACATTCCCACGCTCCTTAC
CACTAAGCAAGTTGGCAAAGATCCAGATTCGCCGTCGACCAGCAGTCTCT
GGAACTGATTACATTATCCATTTGAACGGGGAACAGAAATACAAGTTTAA
CGATCCAACACCAAATAAAGTTGATGATGTAAATATGTATCTCTCTGATC
CTTTCATGGCGCCCGCTAATGCTGTTCTGGAAGCATACCAATTCAATAAT
GGTAAGTATAAGAGGATGACCCTTCAAGAATTGTGGAGACTCTAAGTTTA
ACTTGAATCTCTATAACTGGAATGTTCTTAACTCGAACAGGTTTTATTGT
CCATTAAGTTAACAATGCCTTCAATAAACCTTACTCCTTACTCGAAATTT
CCTTATATAACTTGATATACTTGCTCCTTGCGAGCTCCGTAAGTGAATAC
CTGAGTTGTTTTTTCGTTTTTTTTTGGAAAAAAATATTTTTTGGGAACGA
GATTTTTACTGCTATGAGATATTGAGCAATCCTTCACTTATAAATCCGTT
TAAATCTTTACATTGTTGTCAACTTCTCTCTCCAGGCGTTCAGAAAGGTC
ACGTCATAGATGAAAAATCCAGTCTCGGCCCAGCCTGGAAACTCAATCTT
AAGATCACCATAACCAACACACAGCATACGGGCTGGATCAACATTCTACA
CGCTGTCAACAATGGTGTCTCAAGTGATTTATTGTTTTATGTTTTCATTC
AACCGAGAACAACACGCCCATACATCTGTACCGCCCTCAAACAAGGTGGC
GCCAACCTATGTACATCCACGTCATCGCTATCCTTGAATAGACCAACTTT
GATTGAAATAGATCATTTTCAATCTTCTGGGAAATATTACTATCAGATGA
CTGTTGGTGGACAAGCAGTGTATTTGGATGCGAGCAAAAGGCGACCAAAA
CCCATTCTGAATGCAAATCCAAGGACATTTGAAAATGTGGTTGTTTATGC
GTCAAGCCCTTACTATAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070532-exon-scaffold_56-1575043694:559792..559853 | TCONS_00070532-exon-scaffold_56-1575043694:559792..559853 | Clytia hemisphaerica | exon |
| TCONS_00070532-exon-scaffold_56-1575043694:559327..559357 | TCONS_00070532-exon-scaffold_56-1575043694:559327..559357 | Clytia hemisphaerica | exon |
| TCONS_00070532-exon-scaffold_56-1575043694:558553..559005 | TCONS_00070532-exon-scaffold_56-1575043694:558553..559005 | Clytia hemisphaerica | exon |
| TCONS_00070532-exon-scaffold_56-1575043694:557783..558218 | TCONS_00070532-exon-scaffold_56-1575043694:557783..558218 | Clytia hemisphaerica | exon |
| TCONS_00070532-exon-scaffold_56-1510915933:559792..559853 | TCONS_00070532-exon-scaffold_56-1510915933:559792..559853 | Clytia hemisphaerica | exon |
| TCONS_00070532-exon-scaffold_56-1510915933:559327..559357 | TCONS_00070532-exon-scaffold_56-1510915933:559327..559357 | Clytia hemisphaerica | exon |
| TCONS_00070532-exon-scaffold_56-1510915933:558553..559005 | TCONS_00070532-exon-scaffold_56-1510915933:558553..559005 | Clytia hemisphaerica | exon |
| TCONS_00070532-exon-scaffold_56-1510915933:557783..558218 | TCONS_00070532-exon-scaffold_56-1510915933:557783..558218 | Clytia hemisphaerica | exon |
| TCONS_00070532-exon-scaffold_56-1491911889:559792..559853 | TCONS_00070532-exon-scaffold_56-1491911889:559792..559853 | Clytia hemisphaerica | exon |
| TCONS_00070532-exon-scaffold_56-1491911889:559327..559357 | TCONS_00070532-exon-scaffold_56-1491911889:559327..559357 | Clytia hemisphaerica | exon |
| TCONS_00070532-exon-scaffold_56-1491911889:558553..559005 | TCONS_00070532-exon-scaffold_56-1491911889:558553..559005 | Clytia hemisphaerica | exon |
| TCONS_00070532-exon-scaffold_56-1491911889:557783..558218 | TCONS_00070532-exon-scaffold_56-1491911889:557783..558218 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:557783..559853 - |
Blast
The following BLAST results are available for this feature:
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