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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070538 ID=TCONS_00070538|Name=TCONS_00070538|organism=Clytia hemisphaerica|type=transcript|length=3731bp
CCAAAAAGCTAAAAAGAGTGGTTTTGAAATACACGATTGACTGGCAACCA
TTAGGTTCCAAAGAAACCATTCACATTGTCCAAGATGTGGAGACAACTCG
TCACACAGCAGTTCAAGACTTTGAGAATTCATTGAACAGTGAACTTTTGA
ATTACATTGTCCAAAATACGAAAACTAATTGTAACAAGAAGGACCATGAT
CTGGTAAGCCACGTTCGTCAAAAAGTGAAAAGGAAGATCGTAAAAACCAA
CAGCGTTGATCTTCCTTTCCATGAGCACTATCACAatcaaaaactgaata
aaatcCGCATTAAGAAAATGTTGGACGGAGGTGATGACCCTTTGGTACAA
GATGAAAAAGGTGAAACAATTTTACATCTGTTGTGTAAGGGAAAGAGAAA
AGATAGAAATGCCATGAGAGAGATCGTCAAAATGATTTGTGAGAAAACCC
CGAGCATCAAAACTAAGAAATCCAGGAGCGGAAAGACACCCTACGACTTG
GCCAAGGCTGCACACAAAAATGACCTTTTGCACCTTTTGGCCTATGATGA
CAAGCAAGAAAAACTACACGACACTTGTGAGACGTTTCGTGCAAGAGAAT
TATTGGATGCTCTTGGCAATGGAAACCTCAAGAAAATCGAAACTTTCGTT
CGAAATGAATCCATTACTAATGACACGAAAGAAGAAATCCTATGTCAACC
TCTTAATAAAAGATATCATTCAATTTTGCATTTTGCTATTATGTTTTGTC
AACATGATTTGACGTTAAAGCTGCTGGCGTTGGTCACAAAAGGAAGCATT
AAAACACTTATAGATACTGATGGCTTGTTACTTATCCATTATGCAGCTAG
AGAACCTCAAAACATCAGAGTAGTCGAGCTTATAGTCGAAAAATGGCCAT
TTCTAACTAATGTTAAATGCCATTCAAAGAAACCACCATTGGTATATGCT
ATTGAAAATATGGCATTTGGTAATGCTCTGTACTTTCTTAAAAAGGCGTT
TGCTAACATTAAGGAAATACCTAAAGAAGTTTTATTTATTGCTTTGGCAC
AAAAAGTCAATATATGTTGCAAAGGTGCTGGTAATCGATGTTTAAGATGT
GATAAATACTTCCAGTTAATAGATGCAATGCTTAACCATcgccatttcaa
ttcaattgcTTTCATCAACTCCGTTAGAAATGATCACGATTTTGCAACCC
TTCAAAAGATCGCCGAGAGTCTTTACAAGTACCAAAACAAGAAGGGATTC
ACAATGTCGTATTATATGGAAAAGGTGTCAGAAACCGATCTCAGAAAGCT
TCAAGACCAGTTAGATCATAAAACAAACAACCAGTTACCCCTTTGGGAAA
GACTCGCTCCTGATTTACTTAAAGGATCTCGCAAAAAACTTGATATACGG
CGATTGTCCCCAGACTGTCATTTTCGTCTTGGCAATGAGATTGTCAGTCA
CCTCAAAAAAAGAACTTTACAGATTAAATTAATTCTTCATAGAGTGCGAA
AATTGTCACCTAAGCGTGAAGATTTGATtcgatttttcaagaaattccCA
ATGAATATATCTATAGACAGACTCGACGAATATCAGTTAGATAACttgaa
gattttgcttggtGATTGCCAAGGAATTAAAGGAGattatttttggaaat
ctttttgTGAGGAAGTTGTTAAGGGATTTAAAAAGCATGACCTCTTGCAA
CTTGAGAACTTGAAGAATAACCCGGGGCATTACTCACCATCTCGTGAAAT
GCTTTTGTTGGTCAAACAGAGAAAACCTGATATgacattttctcattttt
acgaaactttgacaaaacaaaataaagatgCAGCAAGTGTACTTGAGGAT
TATTTGGTGaaaattattatgaaaaaaCTCAAGGAAATAAATAGACAATC
GAAAAAGGTGAAGGGTAATTTGAAACCAATGAAACATCTCGCTAGTTCTT
CtcatttataagaataatttttcttCTGTGCATGGAGTACAGATTATCGA
TCTTTGGCAACTTCTCTGGTggtagggtagatcgtcaactacaattttta
gcatgatgtcaaaaaattcaaagtatagtatttttttgtgaaaatctaaT
CTATTTATTGTAAGATATTTTGCGCAACTCTTAACCTCCTAGAtaaaaaa
atccagcattccacAGGGaggtttttgattttaaagcgaaaaatgaataa
aaattggaatggaattgcatttcattttaaaacacaatgttttgagTGAG
CTTGAGTGTTCTCCCTAAAGATATATATAGACcatatttgaaatcatttt
tgaaattttgacccaagaaaaccaagttttagctcgAAATATTGGCAGTT
AGCATgtaaactcaatttctagggcgccattatggatttataaaagattt
ttgaaaaatgaaaattgatttttcctggagctatccctgaagtgtttcat
tgcagaaaatttcaagtgtctgccttgaaaagtttaaaagttgtgggtcc
tcaaaaacgctgctttcatgcattttgatACCTAGAATtggagaaaatca
gccttttaagcttgaaattaaaacattgagcgatctcgctggggttatct
tatctttttatgttgaatattagtacaagacaccatttaaaaaccatttt
gaccctttcttGGCCTTTCATAGCCTTAAAATGGGcaaagaatgccattt
ttactcatttttcgctttagtgAGAAGCAAAgaccccctggggaatgctg
gattttttatcTAGGAGGTTAAAtattgcgcaaaatgtcttacaattgat
aaaatgttcacaaaaaatactacactttgaatattttgactttGCCATTT
GACTATCTACCCTACTCGTGACtctttatttaaaagatatttcgAATAAT
TCGAAATAAAAGCTGGACGCATAtttattctaattttgataCCCTACAAG
GAGGATTATTAATTTCGGTTACTAGTTTTTTACAGTTTCTTGGTTGGTCT
GGAATTTATTCTCCGTCCCTTCTGGTCCCTTATGCATTAGCCACTTACGT
TACATtattttttagttctttttaTTGGGAGACTTAATCAGTAATCAAAc
tacaaaatgaagaaaaagggACCAAAGCATTTGCTTTCATGTTAGACGTA
TTCCCGTCTTCAGTTACACTGAAGAGAAAAGTTTGAAGGACCCGGGTTGG
TTTGTTGTATAAAGTCTCATTTCAGTCTGAGTCAAAAACACTACTTAAGG
AGTTTAAGGTctacttttttttcttattttatcacACACGCACCTTTTAA
AGGACGACGTTTAGATattggaaatatttttacagATGAGGTTTTTAATG
ATTGCATTGCATGGTTCTTAAAGGAATTATTTGTGAATttagcttttttt
aaataatataaatGTATGTATATTGTAAATGTTTCGCCTCGTGAGATGTT
AAACAAGAGGATATTTTATAAAGTAAACGTTTacaggccggtctccactt
tccactttttttttaaccttttttacccgaagaaaagattacgtcataaa
taaaGTTTCGctcgaacaaaaaaaaagttgaaggaatttctattctactt
ttttcatccgttacgtcaatttccaccaatggaattgcttcattttttaa
ccgaccaatgaccttataAAAACGTTACGGGCCGATCAGTACGTAATGTT
TAGTGTGTAAGTTATCGGTTATGGTAGATGG Run BLAST on NCBI transcript from alignment at scaffold_56:607874..614288- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070538 ID=TCONS_00070538|Name=TCONS_00070538|organism=Clytia hemisphaerica|type=transcript|length=6415bp|location=Sequence derived from alignment at scaffold_56:607874..614288- (Clytia hemisphaerica)
CCAAAAAGCTAAAAAGAGTGGTTTTGAAATACACGATTGACTGGCAACCA
TTAGGTTCCAAAGAAACCATTCACATTGTCCAAGATGTGGAGACAACTCG
TCACACAGCAGTTCAAGACTTTGAGAATTCATTGAACAGTGAACTTTTGA
ATTACATTGTCCAAAATACGAAAACTAATTGTAACAAGAAGGACCATGAT
CTGGTAAGCCACGTTCGTCAAAAAGTGAAAAGGAAGATCGTAAAAACCAA
CAGCGTTGATCTTCCTTTCCATGAGCACTATCACAATCAAAAACTGAATA
AAATCCGCATTAAGAAAATGTTGGACGGAGGTGATGACCCTTTGGTACAA
GATGAAAAAGGTGAAACAATTTTACATCTGTTGTGTAAGGGAAAGAGAAA
AGATAGAAATGCCATGAGAGAGATCGTCAAAATGATTTGTGAGAAAACCC
CGAGCATCAAAACTAAGAAATCCAGGAGCGGAAAGACACCCTACGACTTG
GCCAAGGCTGCACACAAAAATGACCTTTTGCACCTTTTGGGTATGTAATT
TCTTTGTTTGACCTTTTTTAAATCAAAGAGATGAAAATTCATGATAAGTT
ATTATTATATACACGTACTCTTAGGTGCCAAATAAACGGTGGGGGTTGGA
GAATTTTCGAGATTTTAATAAACGGAGGGGGGCTAATTGCTTGGAAATTG
GGTTGGAAATTGTACTTCTGAAAACCCAAATAAGGGGCCGTTCACATAGT
ACGTACGCACTATAGGGGTAGGGGGCGTCTTCTCAAAAGCGTATGCTTGC
GTACAGGGGGAGGGGAGAGGTCAAAGGAAAATGTACGGTGTACGCAGAGA
AATTTTTCATAGCCCTTTTTTGCTTGTTTTTTTTTGTCAATTTTTACGCT
TCTTATACGCATCAAGGAATAGAAAAAGTTTCTTAATAAACATTGAGTTT
CATGTATGAAATAAAGGTCCGAGTCAAGCGATTTGAATTCGAAATTTTCT
TCAACCGAGGGGGGGGGGTGAATGAAAAAGTACGTACTTACCAGGGGGGT
TAGCCATTTGCGTACGCTTGCGTACAGGGGGGAGGGGGTACTCGATTTTC
GACATTTTAGTGCGTACGTACTATGTGGAACAGCAAAAGTTAAATAAAAA
TTAAATTTCAATTATAGAATGAAGAATGCTTTTATATGGAATCAGGACCG
TATAGTGAAATAAGTTTTTATACTTACATTATACAACATTTTAAGTCAGA
TACCAATTTCAGCAAAAGTTAAAAAAGGGGGACCCACCCCCTCATTTTGG
TATCGATACCAACAAAATTGACACCACCCCCCGGCCCTGACACCCCCCTG
AAGAAATTCATTAAAATAAATATATTGTCAATTTCATGAACAAAGTAATT
AAGAAAATCATTAAAAAAGAAAAGAACTCGAACGTTCGATTATGAGAGTG
TTTTAAGTCTAACGTTCGACTATTGACATAATTAATGTTTTGTTTTTGCC
TCTAGGTATATAATAAAACATATACAGTATGTGGCCCCCAAAACGGCGAT
CAAATTTGAAATTTGTCTCAAATCTAGAGGAAAATGGAGGTTTGAAATTT
TAGCGATTTCTCGAGATATCTCTAAGATATGAATACAAAATTTTGACCAT
AGTTTTGAAATGTGATTTATAGGGTTTTGGGCATAAATTTATTTGATAAA
ATTTTTACAGTACCCCTGGTTGTCAAAATGCAGGTTTGGGGCCCCCAAAA
CGGAGGTGTAGTTAAAATCAAATTATTAAGCCCAGTGGTAATAGCGGGAA
AAACTAAGAACATATTTGTGTTTTCCCTTAAATTTACGACCCGATGGATG
GGAAATTTATGATTTTTATGAAATATTTCAAGATTTTCGATATTGCAAAG
TCCAAACTGAAAATTTAGAAATTTTCTAAATGACAATTTTGATTTAACAA
CGTCTTAATCAGGTTTTTGAAAACAAATCTCTTTTGAAAATAGTTCCATT
CATGTATGGAATAAGCTGTGAAAATTTTAGAAAAAAAGCTTAACTGAAAC
TGAAAATATTAAGCTTTAAAGATATTTTTCTCCTAAATTTTGCAAAAAAA
ATGACAGAATTTACCGTTTTTGCTGATTCAGCGAAATTTTTTATATAATG
TTAATTTTTTGTTATAAACTATTCACTCAAGGTGATAGGAATAGAATTCC
AAGATTTTTTGTTTTTTCTCATATTTAGAATTTTCGGTTTTGTCTATGCT
GATTCTAGGGCTCCAAAATAATGGTTGACCTTCAAGATGCTATATCTTTT
ACCCAGCCTCTAAAGTCACAGATGTATTTGCATTTTCTGAACGTCATTAG
GTGTAGAAAGTTTCCTATACCCCGTTTTCATAACTTATTTTCAATATCGA
AGGAACTAGAGTGAGTTATATGCAATCTTTATCTAATTTTGGTGTTAAAA
TATTTCCTTTAGACGCAAATATGTTATTTTGAATCTGTCTCGAACCAGCA
AAAACATGCTCATTTTTAAGTATAACCATCATTCTTTCAAAATAAACAAA
AATCTTTTAATTCTGATAAATCTACAAGTCAGAATCTTCATTTTAATGAC
GACCTCCGTTTTGGGGGCCGTCTCCGTTTTGGGGGCCATATACTGTATAA
AATAGGTTTTCGGTTTTCGTTGGTTATTGGATTTATTAACCCTCAGTGAT
GTATAACTCGGCTTCGTCGTTGGCTGACACAAGATAAAATAATGAAAATC
TATCCAAAATTTCGCACTTTTAGTTGGAGCTTAAGGCACAAGGAGTTACA
ATAGAGTATAATTGTTTTTAATAATTGACTTTCAGCCTATGATGACAAGC
AAGAAAAACTACACGACACTTGTGAGACGTTTCGTGCAAGAGAATTATTG
GATGCTCTTGGCAATGGAAACCTCAAGAAAATCGAAACTTTCGTTCGAAA
TGAATCCATTACTAATGACACGAAAGAAGAAATCCTATGTCAACCTCTTA
ATAAAAGATATCATTCAATTTTGCATTTTGCTATTATGTTTTGTCAACAT
GATTTGACGTTAAAGCTGCTGGCGTTGGTCACAAAAGGAAGCATTAAAAC
ACTTATAGATACTGATGGCTTGTTACTTATCCATTATGCAGCTAGAGAAC
CTCAAAACATCAGAGTAGTCGAGCTTATAGTCGAAAAATGGCCATTTCTA
ACTAATGTTAAATGCCATTCAAAGAAACCACCATTGGTATATGCTATTGA
AAATATGGCATTTGGTAATGCTCTGTACTTTCTTAAAAAGGCGTTTGCTA
ACATTAAGGAAATACCTAAAGAAGTTTTATTTATTGCTTTGGCACAAAAA
GTCAATATATGTTGCAAAGGTGCTGGTAATCGATGTTTAAGATGTGATAA
ATACTTCCAGTTAATAGATGCAATGCTTAACCATCGCCATTTCAATTCAA
TTGCTTTCATCAACTCCGTTAGAAATGATCACGATTTTGCAACCCTTCAA
AAGATCGCCGAGAGTGAGTTGCTTTTGATCTTAATATTGTAGGGGCATTA
GCGTGAATTCATGACGTAATACTTTTTATAGAAGCATCTAAAATAGTCCG
GTCATTTGTCACTAGTTTTATTGTTTAAATTCAAAATTGACGGGGTGTTT
GCCATTACACCCGATCTTTTAAGCATCTCCTATTATTTTTATATGCGGTG
TCTCTTGAGCATCCACCTCTCTACCCCCTGCATACAAGAGGCTCCCATAT
TTCAAAATCCCCAAGCAAAGGCGGTCTTGGAAATCTCAATTCCCTGAGGG
AGCTTGTCATTTAAAAGGGGAGGTAAGATAACGGACACTTCCGGCTTCGA
GAAATATACATTCAGTCTTTTAACGCACAAGAAACTTTTTGTATTTTTAC
AGGTCTTTACAAGTACCAAAACAAGAAGGGATTCACAATGTCGTATTATA
TGGAAAAGGTGTCAGAAACCGATCTCAGAAAGCTTCAAGACCAGTTAGAT
CATAAAACAAACAACCAGTTACCCCTTTGGGAAAGACTCGCTCCTGATTT
ACTTAAAGGATCTCGCAAAAAACTTGATATACGGCGATTGTCCCCAGACT
GTCATTTTCGTCTTGGCAATGAGATTGTCAGTCACCTCAAAAAAAGAACT
TTACAGATTAAATTAATTCTTCATAGAGTGCGAAAATTGTCACCTAAGCG
TGAAGATTTGATTCGATTTTTCAAGAAATTCCCAATGAATATATCTATAG
ACAGACTCGACGAATATCAGTTAGATAACTTGAAGATTTTGCTTGGTGAT
TGCCAAGGAATTAAAGGAGATTATTTTTGGAAATCTTTTTGTGAGGAAGT
TGTTAAGGGATTTAAAAAGCATGACCTCTTGCAACTTGAGAACTTGAAGA
ATAACCCGGGGCATTACTCACCATCTCGTGAAATGCTTTTGTTGGTCAAA
CAGAGAAAACCTGATATGACATTTTCTCATTTTTACGAAACTTTGACAAA
ACAAAATAAAGATGCAGCAAGTGTACTTGAGGATTATTTGGTGAAAATTA
TTATGAAAAAACTCAAGGAAATAAATAGACAATCGAAAAAGGTGAAGGGT
AATTTGAAACCAATGAAACATCTCGCTAGTTCTTCTCATTTATAAGAATA
ATTTTTCTTCTGTGCATGGAGTACAGATTATCGATCTTTGGCAACTTCTC
TGGTGGTAGGGTAGATCGTCAACTACAATTTTTAGCATGATGTCAAAAAA
TTCAAAGTATAGTATTTTTTTGTGAAAATCTAATCTATTTATTGTAAGAT
ATTTTGCGCAACTCTTAACCTCCTAGATAAAAAAATCCAGCATTCCACAG
GGAGGTTTTTGATTTTAAAGCGAAAAATGAATAAAAATTGGAATGGAATT
GCATTTCATTTTAAAACACAATGTTTTGAGTGAGCTTGAGTGTTCTCCCT
AAAGATATATATAGACCATATTTGAAATCATTTTTGAAATTTTGACCCAA
GAAAACCAAGTTTTAGCTCGAAATATTGGCAGTTAGCATGTAAACTCAAT
TTCTAGGGCGCCATTATGGATTTATAAAAGATTTTTGAAAAATGAAAATT
GATTTTTCCTGGAGCTATCCCTGAAGTGTTTCATTGCAGAAAATTTCAAG
TGTCTGCCTTGAAAAGTTTAAAAGTTGTGGGTCCTCAAAAACGCTGCTTT
CATGCATTTTGATACCTAGAATTGGAGAAAATCAGCCTTTTAAGCTTGAA
ATTAAAACATTGAGCGATCTCGCTGGGGTTATCTTATCTTTTTATGTTGA
ATATTAGTACAAGACACCATTTAAAAACCATTTTGACCCTTTCTTGGCCT
TTCATAGCCTTAAAATGGGCAAAGAATGCCATTTTTACTCATTTTTCGCT
TTAGTGAGAAGCAAAGACCCCCTGGGGAATGCTGGATTTTTTATCTAGGA
GGTTAAATATTGCGCAAAATGTCTTACAATTGATAAAATGTTCACAAAAA
ATACTACACTTTGAATATTTTGACTTTGCCATTTGACTATCTACCCTACT
CGTGACTCTTTATTTAAAAGATATTTCGAATAATTCGAAATAAAAGCTGG
ACGCATATTTATTCTAATTTTGATACCCTACAAGGAGGATTATTAATTTC
GGTTACTAGTTTTTTACAGTTTCTTGGTTGGTCTGGAATTTATTCTCCGT
CCCTTCTGGTCCCTTATGCATTAGCCACTTACGTTACATTATTTTTTAGT
TCTTTTTATTGGGAGACTTAATCAGTAATCAAACTACAAAATGAAGAAAA
AGGGACCAAAGCATTTGCTTTCATGTTAGACGTATTCCCGTCTTCAGTTA
CACTGAAGAGAAAAGTTTGAAGGACCCGGGTTGGTTTGTTGTATAAAGTC
TCATTTCAGTCTGAGTCAAAAACACTACTTAAGGAGTTTAAGGTCTACTT
TTTTTTCTTATTTTATCACACACGCACCTTTTAAAGGACGACGTTTAGAT
ATTGGAAATATTTTTACAGATGAGGTTTTTAATGATTGCATTGCATGGTT
CTTAAAGGAATTATTTGTGAATTTAGCTTTTTTTAAATAATATAAATGTA
TGTATATTGTAAATGTTTCGCCTCGTGAGATGTTAAACAAGAGGATATTT
TATAAAGTAAACGTTTACAGGCCGGTCTCCACTTTCCACTTTTTTTTTAA
CCTTTTTTACCCGAAGAAAAGATTACGTCATAAATAAAGTTTCGCTCGAA
CAAAAAAAAAGTTGAAGGAATTTCTATTCTACTTTTTTCATCCGTTACGT
CAATTTCCACCAATGGAATTGCTTCATTTTTTAACCGACCAATGACCTTA
TAAAAACGTTACGGGCCGATCAGTACGTAATGTTTAGTGTGTAAGTTATC
GGTTATGGTAGATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070538-exon-scaffold_56-1575043694:613749..614288 | TCONS_00070538-exon-scaffold_56-1575043694:613749..614288 | Clytia hemisphaerica | exon |
| TCONS_00070538-exon-scaffold_56-1575043694:610776..611453 | TCONS_00070538-exon-scaffold_56-1575043694:610776..611453 | Clytia hemisphaerica | exon |
| TCONS_00070538-exon-scaffold_56-1575043694:607874..610386 | TCONS_00070538-exon-scaffold_56-1575043694:607874..610386 | Clytia hemisphaerica | exon |
| TCONS_00070538-exon-scaffold_56-1510915933:613749..614288 | TCONS_00070538-exon-scaffold_56-1510915933:613749..614288 | Clytia hemisphaerica | exon |
| TCONS_00070538-exon-scaffold_56-1510915933:610776..611453 | TCONS_00070538-exon-scaffold_56-1510915933:610776..611453 | Clytia hemisphaerica | exon |
| TCONS_00070538-exon-scaffold_56-1510915933:607874..610386 | TCONS_00070538-exon-scaffold_56-1510915933:607874..610386 | Clytia hemisphaerica | exon |
| TCONS_00070538-exon-scaffold_56-1491911889:613749..614288 | TCONS_00070538-exon-scaffold_56-1491911889:613749..614288 | Clytia hemisphaerica | exon |
| TCONS_00070538-exon-scaffold_56-1491911889:610776..611453 | TCONS_00070538-exon-scaffold_56-1491911889:610776..611453 | Clytia hemisphaerica | exon |
| TCONS_00070538-exon-scaffold_56-1491911889:607874..610386 | TCONS_00070538-exon-scaffold_56-1491911889:607874..610386 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:607874..614288 - |
Blast
The following BLAST results are available for this feature:
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