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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070544 ID=TCONS_00070544|Name=TCONS_00070544|organism=Clytia hemisphaerica|type=transcript|length=4710bpRun BLAST on NCBI protein sequence of TCONS_00070544-protein >TCONS_00070544-protein ID=TCONS_00070544-protein|Name=TCONS_00070544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1128bp ECQATLKVMREESVKYDDSLCSWAHWAYIENCMVKFKQICQQLELMAVNFRun BLAST on NCBI transcript from alignment at scaffold_56:626379..643142- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070544 ID=TCONS_00070544|Name=TCONS_00070544|organism=Clytia hemisphaerica|type=transcript|length=16764bp|location=Sequence derived from alignment at scaffold_56:626379..643142- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_56:626379..643142- >TCONS_00070544 ID=TCONS_00070544|Name=TCONS_00070544|organism=Clytia hemisphaerica|type=CDS|length=71127bp|location=Sequence derived from alignment at scaffold_56:626379..643142- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00070544 vs. Swiss-Prot (Human)
Match: MDN1 (Midasin OS=Homo sapiens GN=MDN1 PE=1 SV=2) HSP 1 Score: 385.956 bits (990), Expect = 1.208e-108 Identity = 188/314 (59.87%), Postives = 243/314 (77.39%), Query Frame = 1
Query: 2440 VTSLRKELEQDLTVWSTNQKTMSLTDRDSMELWLKYDRLTSSLAMQLCEQLRLVIEPTLASKMRGDYRTGKRLNMRKVIPYIASQFRKDKIWLRRTKKSKRDYQIVLAVDDSSSMADNHSKQLAFESLSVISNALRWLEAGELAVCSFGEDTKLLHPFEENFNEQSGASILKQFTFNQKKTKIAHLMKMCTLLFDDAKRKQRXXXXXXXXXXXXXVSDGRGIFLEGKELVQRTAMQAREAGIFTVFLILDDPKNKDSILDIKVPVFKPGTALPEIKSYIDEFPFPFYVLLRDINSLPNVLSDALRQWFELVTQA 3381
V LR+ELE+ L +W + ++ + E+W Y LT+ L+ +LCE+LRL++EPT A+K++GDYRTGKRLN+RKVIPYIASQFRKDKIWLRRTK SKR YQI LA+DDSSSM DNH+KQLAFESL+VI NAL LE G++AVCSFGE KLLHPF E F++ SG+ IL+ F QKKTKIA ++ +F A++ + N +S+ +QLLL+VSDGRG+FLEGKE V AR A IF +F++LD+P ++DSILDIKVP+FK +PEI+SY++EFPFP+Y++LRD+N+LP LSDALRQWFELVT +
Sbjct: 5281 VNELRQELERQLEMWQPRESGNPEEEKVAAEMWQSYLILTAPLSQRLCEELRLILEPTQAAKLKGDYRTGKRLNIRKVIPYIASQFRKDKIWLRRTKPSKRQYQICLAIDDSSSMVDNHTKQLAFESLAVIGNALTLLEVGQIAVCSFGESVKLLHPFHEQFSDYSGSQILRLCKFQQKKTKIAQFLESVANMFAAAQQLSQ-NISSETAQLLLVVSDGRGLFLEGKERVLAAVQAARNANIFVIFVVLDNPSSRDSILDIKVPIFKGPGEMPEIRSYMEEFPFPYYIILRDVNALPETLSDALRQWFELVTAS 5593 HSP 2 Score: 95.9005 bits (237), Expect = 1.933e-19 Identity = 128/369 (34.69%), Postives = 208/369 (56.37%), Query Frame = 1
Query: 319 IKQILISIQNIV-----KSTEDFKEKNVQEEDTG---LWKGQFSPLLTKRFISHLSCLDISTITSLTEQFISQLNEQ------------SINQSYCLNVVSMVKEALQWLQFYTFHTLMLHRTSCKMLYVLLGLFTDLLKQGYCSPPEEDENATGEGATEFEDIHDGGLGSGEGVKDVSDQIETEDQVEDT-KHXXXXXXXXXXXXXXXXXXXXGIEMTDDFESQLQXXXXXXXXXXXXXXXXXXXXXXXXXQMGDVEDDNQTNEVDENMWGSXXXXXXXXXXXXXXXXXAQGQNGESKSELVAKDDNRGEQEGDEPKNEKEQ----------KDEGGQNENEEDHPINEMDDDVTDDVMQEEDHGKQE 1332
I+ IL +IQN+ K+ E+ + + QE+ G L G + LL F + +S L + I S + + +L S + S + +V ++ + F+ +L HR++ K+L VL +FT+L ++G+C P E E++ GEGATEF D GG+G GEG+KDVSDQI E+QVEDT + + ++K++ + DIK E + IEM++DF+ ++ + + + E+DDE+++SEG + DK MGD+ + + +++DE +WG DDE+E EE+ + K E+ G + E SELVAKDDN G+ K++ +Q D+GGQ E++ + I+E D D + + HG QE
Sbjct: 4512 IRAILCAIQNLEERKNEKAEENTDQASPQEDYAGFERLQSGHLTKLLEDDFWADVSTLHVQKIISAISELLERLKSYGEDGTAAKHLFFSQSCSLLVRLVPVLSSYSDLVLFFLTMSLATHRSTAKLLSVLAQVFTELAQKGFCLPKEFMEDSAGEGATEFHDYEGGGIGEGEGMKDVSDQIGNEEQVEDTFQKGQEKDKEDPDSKSDIKGEDNAIEMSEDFDGKMH--DGELEEQEEDDEKSDSEGGDLDKHMGDL-NGEEADKLDERLWGDDDEEEDEEEEDNKTEETGPGMD-EEDSELVAKDDNL--DSGNSNKDKSQQDKKEEKEEAEADDGGQGEDKINEQIDERDYDENE---VDPYHGNQE 4871 The following BLAST results are available for this feature:
BLAST of TCONS_00070544 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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