TCONS_00070565 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070565
Unique NameTCONS_00070565
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070565 ID=TCONS_00070565|Name=TCONS_00070565|organism=Clytia hemisphaerica|type=transcript|length=266bp
GACCTTGAAGAAATTTTGTTTTTGATTGATCTTGATGGGCACAACTCTGG
CACCGGCGCTCTCCAAATATTTAACATATGATGCGGAAATGTAACAATCG
CCCGGAACAGGAAACGGGTCGTCCGGATGAAAATGTTGTGCAAGAACGCC
AATGATTGGTCGATTGTTCAGCTGTTGATCACGTGACTGTGACGTATTGA
TAAAGTAACCAATCAGTAGAAGGTATGCTAGTTTCTCCATTTTTCAAGTA
GTTACTGAAATTCGAA
Run BLAST on NCBI

transcript from alignment at scaffold_56:865373..866028-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070565 ID=TCONS_00070565|Name=TCONS_00070565|organism=Clytia hemisphaerica|type=transcript|length=656bp|location=Sequence derived from alignment at scaffold_56:865373..866028- (Clytia hemisphaerica)
GACCTTGAAGAAATTTTGTAAGTGTTCACTCTTTTTGTATGAATCCATGC
TTACACAATTATAATGTGCGTTATACGTTAACGGTTCAAATCTTACGGCA
TCGAAAATTTCATCTGACATTTCATGAATCATGCGCCCATCACGGTTAAG
ATCTGGCAACTTCATTGGTCTATCCCAAGTTCCTTTGATTGCCGACAGAA
CGTTTGATTGGGCTACTAATACACTCAGTTGTTGAAAACCCATACACGTG
CCCCAAATGGGGAAAAAGTTCCCCGCGTTACGTTGACTGACGGCGTACTC
AAAAGCCATTTTCGCGTTCCGTTGAAATGGGGAGTTCATGACGTCAGAAT
CGCCACCTGGAAATAAAACTCCGTTCACACTTGATAACAATTTTTCAATG
ATTTCAGGTTTTTGATTGATCTTGATGGGCACAACTCTGGCACCGGCGCT
CTCCAAATATTTAACATATGATGCGGAAATGTAACAATCGCCCGGAACAG
GAAACGGGTCGTCCGGATGAAAATGTTGTGCAAGAACGCCAATGATTGGT
CGATTGTTCAGCTGTTGATCACGTGACTGTGACGTATTGATAAAGTAACC
AATCAGTAGAAGGTATGCTAGTTTCTCCATTTTTCAAGTAGTTACTGAAA
TTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043913XLOC_043913Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070565-exon-scaffold_56-1575043694:866012..866028TCONS_00070565-exon-scaffold_56-1575043694:866012..866028Clytia hemisphaericaexon
TCONS_00070565-exon-scaffold_56-1575043694:865373..865621TCONS_00070565-exon-scaffold_56-1575043694:865373..865621Clytia hemisphaericaexon
TCONS_00070565-exon-scaffold_56-1510915933:866012..866028TCONS_00070565-exon-scaffold_56-1510915933:866012..866028Clytia hemisphaericaexon
TCONS_00070565-exon-scaffold_56-1510915933:865373..865621TCONS_00070565-exon-scaffold_56-1510915933:865373..865621Clytia hemisphaericaexon
TCONS_00070565-exon-scaffold_56-1491911889:866012..866028TCONS_00070565-exon-scaffold_56-1491911889:866012..866028Clytia hemisphaericaexon
TCONS_00070565-exon-scaffold_56-1491911889:865373..865621TCONS_00070565-exon-scaffold_56-1491911889:865373..865621Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:865373..866028 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.497908	0	0	0	0.598392	0	0.538888	0.239152	0	8.06578	0.638845	6.82231	3.1687	10.2099	10.2334	13.5904	9.63136	7.77982	7.11885	9.41069	9.17567	0	9.16252	3.55665	6.05232	1.56125	0	18.6086	14.5915
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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