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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070589 ID=TCONS_00070589|Name=TCONS_00070589|organism=Clytia hemisphaerica|type=transcript|length=1046bp
CTAACATCGTTGATTTTGAATGTGAATCTCAAATCTCAATTCATTTCTTG
TTTGAAATTGATTCAAGTCACTCGATCTTGTTACACTGGAAGGTCTACTC
TTGGAGTCAATCACACCATTTGCAGTGAACTTTTGATCTTTGATAGATCt
gataaaaaaactaaactgaTGAATTagaatttacattttcaaagtgGAAA
CCGAAGATGTTGATATTTCAAGAGCTTTCCACTACCGCTCACATGGTGTT
TGCATTATCCTCCATCATTTGGTTTCTCTCATTGCTCGCCATTATGACAG
CTTTTCGAGGACTACTGCAAAACCCGagtcgaaccaatcaaattatTATG
CTCATGAACCTGAACATATCTGAGCTGGTGTTCTGTTTTACAATCCCGCT
ACGATTAATACCGTCGTTCACCGCCCAATGCAAAGCTTGTGAATATATTC
GAAAAGTGGAGAACTGCAATGGTTTCTTTTACTACTCTTCGTTTTTCTTC
ATCACCATCGACCGCCTTTTGTGCCTCATACTAAGCATCAAATACAATCT
GAAAGTGACGCCAAAACGTGTCAAGATCGTTAGTGTCATTTTAGCATTTT
GCTGTTTTCTATGTTCGCTCCCTTTCTATTTCCTATCCACTGAAACCACA
CAATCTATTATCAACAGTATCATATATCCAGTCCtcgattttctttttgt
tgtcACGGCAACTACAGTATACACCCTCATCATCATCAAACTACATAGTC
GGCAGCAACGGACCTTCGACTGGGCCGCATTTCGGCGTCGATATCGCGTT
CCCTTTTTTATTGTACTTTCGTTTATCATTTGTATACAAATTCCTGACTT
ATACATCATCATATCGGTTTATCTGTCCAATGAAAGTATTGGGGAAGATG
CGTTGATTAAGACATTGTTGATCTATTCATGTTGGTTCATAGGGTTTGGT
ATCGATTCTGTGATTTATATCCGATTCGTGTGCAGGCGGAGAAGAAGAAC
CACTGTTTTCTGATTGTTGtgaatttattaaaaaatgaataacatt Run BLAST on NCBI protein sequence of TCONS_00070589-protein >TCONS_00070589-protein ID=TCONS_00070589-protein|Name=TCONS_00070589-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MLIFQELSTTAHMVFALSSIIWFLSLLAIMTAFRGLLQNPSRTNQIIMLM
NLNISELVFCFTIPLRLIPSFTAQCKACEYIRKVENCNGFFYYSSFFFIT
IDRLLCLILSIKYNLKVTPKRVKIVSVILAFCCFLCSLPFYFLSTETTQS
IINSIIYPVLDFLFVVTATTVYTLIIIKLHSRQQRTFDWAAFRRRYRVPF
FIVLSFIICIQIPDLYIIISVYLSNESIGEDALIKTLLIYSCWFIGFGID
SVIYIRFVCRRRRRTTVF Run BLAST on NCBI transcript from alignment at scaffold_56:649977..651022 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070589 ID=TCONS_00070589|Name=TCONS_00070589|organism=Clytia hemisphaerica|type=transcript|length=1046bp|location=Sequence derived from alignment at scaffold_56:649977..651022 (Clytia hemisphaerica)
aatgttattcattttttaataaattcaCAACAATCAGAAAACAGTGGTTC
TTCTTCTCCGCCTGCACACGAATCGGATATAAATCACAGAATCGATACCA
AACCCTATGAACCAACATGAATAGATCAACAATGTCTTAATCAACGCATC
TTCCCCAATACTTTCATTGGACAGATAAACCGATATGATGATGTATAAGT
CAGGAATTTGTATACAAATGATAAACGAAAGTACAATAAAAAAGGGAACG
CGATATCGACGCCGAAATGCGGCCCAGTCGAAGGTCCGTTGCTGCCGACT
ATGTAGTTTGATGATGATGAGGGTGTATACTGTAGTTGCCGTgacaacaa
aaagaaaatcgaGGACTGGATATATGATACTGTTGATAATAGATTGTGTG
GTTTCAGTGGATAGGAAATAGAAAGGGAGCGAACATAGAAAACAGCAAAA
TGCTAAAATGACACTAACGATCTTGACACGTTTTGGCGTCACTTTCAGAT
TGTATTTGATGCTTAGTATGAGGCACAAAAGGCGGTCGATGGTGATGAAG
AAAAACGAAGAGTAGTAAAAGAAACCATTGCAGTTCTCCACTTTTCGAAT
ATATTCACAAGCTTTGCATTGGGCGGTGAACGACGGTATTAATCGTAGCG
GGATTGTAAAACAGAACACCAGCTCAGATATGTTCAGGTTCATGAGCATA
ataatttgattggttcgactCGGGTTTTGCAGTAGTCCTCGAAAAGCTGT
CATAATGGCGAGCAATGAGAGAAACCAAATGATGGAGGATAATGCAAACA
CCATGTGAGCGGTAGTGGAAAGCTCTTGAAATATCAACATCTTCGGTTTC
cactttgaaaatgtaaattctAATTCAtcagtttagtttttttatcaGAT
CTATCAAAGATCAAAAGTTCACTGCAAATGGTGTGATTGACTCCAAGAGT
AGACCTTCCAGTGTAACAAGATCGAGTGACTTGAATCAATTTCAAACAAG
AAATGAATTGAGATTTGAGATTCACATTCAAAATCAACGATGTTAG Coding sequence (CDS) from alignment at scaffold_56:649977..651022 >TCONS_00070589 ID=TCONS_00070589|Name=TCONS_00070589|organism=Clytia hemisphaerica|type=CDS|length=807bp|location=Sequence derived from alignment at scaffold_56:649977..651022 (Clytia hemisphaerica)
TCAGAAAACAGTGGTTCTTCTTCTCCGCCTGCACACGAATCGGATATAAA
TCACAGAATCGATACCAAACCCTATGAACCAACATGAATAGATCAACAAT
GTCTTAATCAACGCATCTTCCCCAATACTTTCATTGGACAGATAAACCGA
TATGATGATGTATAAGTCAGGAATTTGTATACAAATGATAAACGAAAGTA
CAATAAAAAAGGGAACGCGATATCGACGCCGAAATGCGGCCCAGTCGAAG
GTCCGTTGCTGCCGACTATGTAGTTTGATGATGATGAGGGTGTATACTGT
AGTTGCCGTgacaacaaaaagaaaatcgaGGACTGGATATATGATACTGT
TGATAATAGATTGTGTGGTTTCAGTGGATAGGAAATAGAAAGGGAGCGAA
CATAGAAAACAGCAAAATGCTAAAATGACACTAACGATCTTGACACGTTT
TGGCGTCACTTTCAGATTGTATTTGATGCTTAGTATGAGGCACAAAAGGC
GGTCGATGGTGATGAAGAAAAACGAAGAGTAGTAAAAGAAACCATTGCAG
TTCTCCACTTTTCGAATATATTCACAAGCTTTGCATTGGGCGGTGAACGA
CGGTATTAATCGTAGCGGGATTGTAAAACAGAACACCAGCTCAGATATGT
TCAGGTTCATGAGCATAataatttgattggttcgactCGGGTTTTGCAGT
AGTCCTCGAAAAGCTGTCATAATGGCGAGCAATGAGAGAAACCAAATGAT
GGAGGATAATGCAAACACCATGTGAGCGGTAGTGGAAAGCTCTTGAAATA
TCAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070589-exon-scaffold_56-1491911889:649977..651022 | TCONS_00070589-exon-scaffold_56-1491911889:649977..651022 | Clytia hemisphaerica | exon |
| TCONS_00070589-exon-scaffold_56-1510915933:649977..651022 | TCONS_00070589-exon-scaffold_56-1510915933:649977..651022 | Clytia hemisphaerica | exon |
| TCONS_00070589-exon-scaffold_56-1575043694:649977..651022 | TCONS_00070589-exon-scaffold_56-1575043694:649977..651022 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:649977..651022 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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