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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070629 ID=TCONS_00070629|Name=TCONS_00070629|organism=Clytia hemisphaerica|type=transcript|length=3307bpRun BLAST on NCBI protein sequence of TCONS_00070629-protein >TCONS_00070629-protein ID=TCONS_00070629-protein|Name=TCONS_00070629-protein|organism=Clytia hemisphaerica|type=polypeptide|length=707bp MKNLVICLVFKVYLITIVFSEHIENYDDKPAYDELYQSGRTSYDNDNHLERun BLAST on NCBI transcript from alignment at scaffold_57:210447..230775+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070629 ID=TCONS_00070629|Name=TCONS_00070629|organism=Clytia hemisphaerica|type=transcript|length=20329bp|location=Sequence derived from alignment at scaffold_57:210447..230775+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_57:210447..230775+ >TCONS_00070629 ID=TCONS_00070629|Name=TCONS_00070629|organism=Clytia hemisphaerica|type=CDS|length=29736bp|location=Sequence derived from alignment at scaffold_57:210447..230775+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070629 vs. Swiss-Prot (Human)
Match: P3H2 (Prolyl 3-hydroxylase 2 OS=Homo sapiens GN=P3H2 PE=1 SV=1) HSP 1 Score: 320.857 bits (821), Expect = 6.368e-95 Identity = 208/674 (30.86%), Postives = 340/674 (50.45%), Query Frame = 2
Query: 287 YDELYQSGRTSYDNDNHLEAVSFFEKAIADYRHEQEVKGQCWLRCQDSIKDTQSVYSTLIDGQLNFLHYVIKTRSCFQLCKEKFLG---RRGRIAKYVKELFENKEPYSFLQYSLYKIGEVSKALAAAYTHFEANPSNELMKENIEILMSKQNKDWADLTSLEEPPHISLYKKGEKAYTDSDFKQCISTFEESLTLFYKELAKCNAVCEEQDTTKE---VSYTASLFK----HFQGILACRKKCQVALTKVDGE-SSRTHFVPQYFHYLQYCYFQENNLIEATNAAESYLLMIPSDPVMSKNLYWYQN--QPAVKGKAVGPRPRAKKYMKQFAIELNLAQILD---GYLXXXXXXXXXXXXXRMLDRIYRMVAEDLTTDERGIRGDAESIKGHQAVHRAYRNANRWQTHPKIKQSV-LLMEEEQLNGTNRVAFDNVSTQEECTEIMKLVKELTLESNQMLITKRTQQIKDLNRNLAQGGDGYKHSHRDADHPFTKKETFKGVTIKSAVDAAKEGKVSVNQTDLYVKLSERTRLLVQEYFDLPKRLNFAFTHLVCRHALADASNVGDHLSHPIHSDNCLVNEDGPGTCPEKSPAYTWRDYSALLYLNDDFEGGNFIFANHDGK-IQAQVRPKCGRMVAFRSKSIENLHGVLGVKSGTRCALPVWFTLSDERRHLE 2254
+D LY SG +Y + ++ AV E A+ +R +E++ +C C +L ++ C++ C+ + LG R R+++ V+ F+ + PY++LQ + K+ ++ KA+ AA+T F ANP + M++NIE + + L E PH+ Y G K Y DF+ I FE++L ++ E +C +CE +E + Y A L++ H+ +L C+ +C L G S +F+P ++ YLQ+ Y++ ++A A++YLL P D + N+ +Y++ ++ ++ R ++K+ +E L + G+ + + I + +R V + + + G + K + R R P + +++ + EQLNGT RV DNV ++E+C E+ ++ S ML+ GDGY R P T E F+G T+ A+ + EG+V + L+ +SE+ R +V+ YF L L F++TH+VCR AL+ + + LSHPIH+DNCL++ + C ++ PAYT+RDYSALLY+NDDFEGG FIF D K + A ++PKCGRM++F S EN HGV V G RCA+ +WFTL R LE
Sbjct: 44 FDLLYASGAAAYYSGDYERAVRDLEAALRSHRRLREIRTRCARHCAARHPLPPPPPGEGPGAELPLFRSLLGRARCYRSCETQRLGGPASRHRVSEDVRSDFQRRVPYNYLQRAYIKLNQLEKAVEAAHTFFVANPEHMEMQQNIENYRATAGVEALQLVDREAKPHMESYNAGVKHYEADDFEMAIRHFEQALREYFVEDTECRTLCEGPQRFEEYEYLGYKAGLYEAIADHYMQVLVCQHECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDDSIDPASIEAREDLTMFVKRHKLESELIKSAAEGLGFSYTEPNYWIRYGGRQDENR----VPSGVNVEGAEVHGFSMGKKLSPKIDRDLREGG-----PLLYENITFVYNSEQLNGTQRVLLDNVLSEEQCRELH------SVASGIMLV-----------------GDGY----RGKTSPHTPNEKFEGATVLKALKSGYEGRVPLKSARLFYDISEKARRIVESYFMLNSTLYFSYTHMVCRTALSGQQDRRNDLSHPIHADNCLLDPEA-NECWKEPPAYTFRDYSALLYMNDDFEGGEFIFTEMDAKTVTASIKPKCGRMISFSSGG-ENPHGVKAVTKGKRCAVALWFTLDPLYRELE 679 The following BLAST results are available for this feature:
BLAST of TCONS_00070629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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