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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070638 ID=TCONS_00070638|Name=TCONS_00070638|organism=Clytia hemisphaerica|type=transcript|length=661bp
aCCCCCGTCATATTATCTTTGCTTTGTCATGGTTGACAGCTCTACAAATA
ACGGTTGGCGAGCTTACGTTTGAATCATTCTCAAATCAAGTTCCGTAGAA
GAAAAGACAGATAGACGATTTTTAACATAGTTCAAGATAATGGATAAAAT
TGTGATTCTGATGACAATAGCAGTTGCTGTACAAGcaCGCATTGAAATTC
TTTGTGGAGAAAAAGCGCTTTATTTCAAAGCTGAAGCAAGTGATCTAAAC
GGATGGCCTGCTCGAAAAATTCGCGTCGGAAAATGCCGTTTAAATCCAGA
ATACACTGTCAGTGCGGACTATGAAGAATGCGGACTCATGGTTGCAGAAT
CAGaaaaaacaatcgAAGTCAGAACAACAGTATTAAGTGATAAACTCAAA
TCAGCCATCACAAGGAAACGACCAGTAGAACTCATTATTTCATGCGAGTA
CAATATCAACAAACGACAGTCATCCAAGGTAGCCATACGAACAGTTATTG
GGAAGATTGGTGGATATGTTTCAAGACAAGGCAAAGTATTGGATATTGAT
ATTAAATATGTTGATAAGAGTGGCGAAATACATGGAAATGATGAAGAGAA
CGTTAAGAAAGAATTAGGAGAAGACGTGACAGCAATAATCGATGGCCCTA
ATCTCAGCAAA Run BLAST on NCBI transcript from alignment at scaffold_57:550722..555071+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070638 ID=TCONS_00070638|Name=TCONS_00070638|organism=Clytia hemisphaerica|type=transcript|length=4350bp|location=Sequence derived from alignment at scaffold_57:550722..555071+ (Clytia hemisphaerica)
aCCCCCGTCATATTATCTTTGCTTTGTCATGGTTGACAGCTCTACAAATA
ACGGTTGGCGAGCTTACGTTTGAATCATTCTCAAATCAAGTTCCGTAGAA
GAAAAGACAGATAGACGATTTTTAACATAGTTCAAGATAATGGATAAAAT
TGTGATTCTGATGACAATAGCAGTTGCTGTACAAGGTAAATATTTGGTCT
TAGGGGGGGGCTTGATAAATGATTTAGCAACACACGTTGGTAATATGCAG
GAGTTCTCATCTAACGATACCCAAGGTAGTACAGTTGATtctctttaatt
cgatattCAAGGGGCTTGGCCTTTCCTTCAAATTAGAGAGGGATTAGAAG
TTATAGAGAGATATTCTACACTACTTACCAGCTGAAAggaccaatgtttt
agttcgaattatagaaagattcgaatcatACAGGTTCGAATTAGACAGAG
TTGACTGTAATATACAAGAGCCTTCACCTAACAGTACCCAAAGTAGGTCA
ATGTTTACGCAATTTCTGAAACCCTGTTATCTAGAAGAATATTTGAAGAG
GTGGAGATTTTGCGGTTTTTGTGATCAGTCCCATctcatttttcataaaa
aaattctcgTACTTGGTCTAGATATATTTGTAAGTTGCAAGTGGCTATGT
TTACGAAATTGTGGATTCTATTTATAAAAGAGattcttttctgaaaaaat
tagagtattTAATTCCACTGGAGTCTAATTAgtaaagatttaaaaataaa
attttcagctttaattttacaaaactatttttttaacttttaagacACCC
ATTcaagtagtaagtaagtaagtttgcgacctcAGTCGAGGGAAATCCGA
AGGCTCCTTTTTCTCTAGCTGTTAACCCGAAGGAAGGGAAGGGCACCACT
CCTTTCCTTGGATTCTCCATTTTCCCTTGATTCTTCTCCTtaaggctggt
ctccacttgtgcgcgctgcaatcgcacctttcggcttcaatcctttttgc
ttggaaaaaagactACGTCTTAAGAATGGAGCGTGTGctcgaaaaaaagt
tgaacacatttcaacatTTTCCAACCCTTACGTCACATcgcaccaatgga
gttgcttcatttctcttttgaccaatagcgtggaagctttgcctGAAAAG
ATGTAATCGAAGCGCGCGTAAGTGGAGACCGGGCTTTAATTGCCGAGTAA
TAagcattttgggaatctttagtATGATCTGGCCGGTCACCCGAACATAA
ATCCTTGCACACTGTAGTTGTATACTCTTCCTTCATGCTCCGTAGTCGAT
CATCCAAGACCTCTTATACTAGCAAATGTTCCTGTGGTTAAAAATGACGT
CAGCTTCACAAACAAAAGGATTAATCTTAggtgtagaacatgaaaataat
CCTTATGATCCCCTTATAAGATCATATTTAACGGGAATGAAAGTTAAGAA
ACtctaaacttttcaaatagGTGGGATGATTTTTGCGGTATTATTCTTAC
GTTATCTTATAAATCACCACACCTCATAAATTATAATTTGTAATCTCAAA
CAAGAATGCCCAACACGCGATATTTATATGTACTGTTGTCAAGATAGCCT
TATTAATTTTGGTGAAGTAAGAGCCAATATGAAAGGGCCTCTAGTTAATA
ACTTTGAGTGAACTCAGCGGAGTCCCCAATCACGctatcacgcaaaaaaa
aattttaatcaccccagctggcacacaacgttgtttcaacgtttatctaa
cgttaatAGCATCCATACAACTCGCCGAAAATTCTCTAATCATTCTCGTA
TCAACTCATACATCATGCCATAACGCCAAAAAAGGCCTAATTATGCAGGC
CTCTCACGCATTGAACCCTAAAAGCACAATCCCGCAATTTCGGCCACCAT
TTCGCATCTTTTTTTATGAAAGATTTAGTAGCGGATAACCGATTCATTTC
AACATAGCATATCAACTGCATTTGAAACTcatctttttgttgttttttta
gcaCGCATTGAAATTCTTTGTGGAGAAAAAGCGCTTTATTTCAAAGCTGA
AGCAAGTGATCTAAACGGATGGCCTGCTCGAAAAATTCGCGTCGGAAAAT
GCCGTTTAAATCCAGAATACACTGTCAGTGCGGACTATGAAGAATGCGGA
CTCATGGTTGCAGAATCAGGTAAAGCTCCTTTAAAAACAACAATGTTAGT
ATTGCTTGCAACTGTGTTTTTACTGTTCAACTTCAACGTCAGTAGAGAGA
AAAGCTTTTAAATAATATACctagaagcaaaaacaaaatatacattaggc
ttaaataaaaaaatctagtttttccggaatgcgggtgaaggaaaaaagct
ttcatgCGGCCGGAAAACCTTtgtttttttactatttttgataactcaag
atcttcgaaataaaatttagatttaaatataactcggcttcgcctcgttg
aatattacatcacctcaGGTTAATAAGTCTCAATAACCAGCTTTTACCTt
tcgaatatctgcttattattcaatggctgttttttgcCTACGGGTAATAA
TTGAGAATCATAGATGATACTCTTTCTCTAATTAATTGATGGGTAtcgtt
tttagaaaaaacaatcgAAGTCAGAACAACAGTATTAAGTGATAAACTCA
AATCAGCCATCACAAGGAAACGACCAGTAGAACTCATTATTTCATGCGAG
TACAATATCAACAAACGACAGTCATCCAAGGTAGCCATACGAACAGTTAT
TGGGAAGATTGGTGGATATGTTTCAAGACAAGGCAAAGTATTGGATATTG
ATATTAAATATGTTGATAAGAGTGGCGAAATACATGGAAATGATGAAGAG
AACGTTAAGAAAGAATTAGGTAAGGACAAATTTCTTCGTTTGCGGCCGAC
TTCGCGTATTCacgtaccttatcggccaaaaattagtcggccttaatttt
agtcggccttaattattagtcggccctaattttagtcatctcgtcaaaat
ttagtcactaagggccgactaataactaAAACCGATATATTCataaattc
tttgttaaagtaATACCGATATGAAAAGTGggttaaggaaagcttaatta
taaacttaATTTTATTTGGCCCGAATTTTTAGCCGGCCTAAATTTTTAGC
CGGCCCAAAATTTTAGTCAGCCAAAATATTAAGTCGGCCCttattttagt
caccaagccaaaatttagtcacttaggaccgactaagttttggccgataa
atTAGTAGAGGGGTCAAAATACCGGCAGTACTTCTAAGGCGGActtttaa
cttttgatacaaaaaGTTTTGCTTAAGCATCAATAACCATACGTTTTGAC
TACGATTGTGGCTTAAATTCAAGACataatacagttgactctttctaatt
cgatcttcaaattGACTAGGAGGAAAATAACTCAAATTagaaaaaagatt
cgaattactgAGGGTATTTTAAACAACTTTCCAGCTAAGGGGGACCATTA
Cttcagttcgaattatagaaagattcgaatagcttagtaccaataccaat
aTGTTTTGAATAAGATTGTAGCTTGACTCTCtccaattcgatcttcaaaT
GGACCAGGAGGAAAATACCTCAAATTAGAATtaacattcgaattacagag
ggtATTTTAAACAACTTTCCAGCTAAGGGGGACCATTACttcagttcgaa
ttatagaaagattcgaataaggTAAAGTTGACTGTATAAATGGAGCGTAT
CAATTTTCGATTATCTTATAGGAGAAGACGTGACAGCAATAATCGATGGC
CCTAATCTCAGCAAACTAGGCTTGATCGCATCTGCTTCTGATTGTTTCGT
TAGCCCTGACGCTGTTCCCGACGAACACAGTCTAAAATATTATTTGCTAC
GGGATATGTAAGTCTAAATTCTTTTCAGGTGTGATGAGACCCCCCCCCCC
NCTTGGTGAGGCCAAATTTCTTCGTTCACGGCCAACTTCGAGTATACACG
TAGTAGAGGGGTCAGAATACCGGTAGTACTTCCAAGGActtttaactttt
gatacaaaaaCTTTTGCTTAGCATCAATAACCATACGTTTTAAATGCGAT
TGTAGCTTGACTCTCTCCAATTCCGATCTTCAAATGGACCGGGAGGAAAA
TACCTCAAATTAGAaataaaattcgaattacagagggtATTTTAAACAAC
TTTCCAGCTAAGGGGGACCATTACttcagttcgaattatagaaagattcg
aataaggGAAAGTTGACTGTATAAATGGAGCGTATCAATTTTCGATTATC
TTATAGGAGAAGACGTGACAGCAATAATCGATGGCCCTAATCTCAGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070638-exon-scaffold_57-1491911889:550722..550906 | TCONS_00070638-exon-scaffold_57-1491911889:550722..550906 | Clytia hemisphaerica | exon |
| TCONS_00070638-exon-scaffold_57-1510915933:550722..550906 | TCONS_00070638-exon-scaffold_57-1510915933:550722..550906 | Clytia hemisphaerica | exon |
| TCONS_00070638-exon-scaffold_57-1575043694:550722..550906 | TCONS_00070638-exon-scaffold_57-1575043694:550722..550906 | Clytia hemisphaerica | exon |
| TCONS_00070638-exon-scaffold_57-1491911889:552723..552890 | TCONS_00070638-exon-scaffold_57-1491911889:552723..552890 | Clytia hemisphaerica | exon |
| TCONS_00070638-exon-scaffold_57-1510915933:552723..552890 | TCONS_00070638-exon-scaffold_57-1510915933:552723..552890 | Clytia hemisphaerica | exon |
| TCONS_00070638-exon-scaffold_57-1575043694:552723..552890 | TCONS_00070638-exon-scaffold_57-1575043694:552723..552890 | Clytia hemisphaerica | exon |
| TCONS_00070638-exon-scaffold_57-1491911889:553327..553590 | TCONS_00070638-exon-scaffold_57-1491911889:553327..553590 | Clytia hemisphaerica | exon |
| TCONS_00070638-exon-scaffold_57-1510915933:553327..553590 | TCONS_00070638-exon-scaffold_57-1510915933:553327..553590 | Clytia hemisphaerica | exon |
| TCONS_00070638-exon-scaffold_57-1575043694:553327..553590 | TCONS_00070638-exon-scaffold_57-1575043694:553327..553590 | Clytia hemisphaerica | exon |
| TCONS_00070638-exon-scaffold_57-1491911889:555028..555071 | TCONS_00070638-exon-scaffold_57-1491911889:555028..555071 | Clytia hemisphaerica | exon |
| TCONS_00070638-exon-scaffold_57-1510915933:555028..555071 | TCONS_00070638-exon-scaffold_57-1510915933:555028..555071 | Clytia hemisphaerica | exon |
| TCONS_00070638-exon-scaffold_57-1575043694:555028..555071 | TCONS_00070638-exon-scaffold_57-1575043694:555028..555071 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_57 | supercontig | scaffold_57:550722..555071 + |
Blast
The following BLAST results are available for this feature:
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