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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070683 ID=TCONS_00070683|Name=TCONS_00070683|organism=Clytia hemisphaerica|type=transcript|length=2455bpRun BLAST on NCBI protein sequence of TCONS_00070683-protein >TCONS_00070683-protein ID=TCONS_00070683-protein|Name=TCONS_00070683-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp MSNCEDDIGAYDQLRLLGKGGCAQVFLVKNKHNGRYFAMKKIELDPSRRSRun BLAST on NCBI transcript from alignment at scaffold_57:452445..482838- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070683 ID=TCONS_00070683|Name=TCONS_00070683|organism=Clytia hemisphaerica|type=transcript|length=30394bp|location=Sequence derived from alignment at scaffold_57:452445..482838- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_57:452445..482838- >TCONS_00070683 ID=TCONS_00070683|Name=TCONS_00070683|organism=Clytia hemisphaerica|type=CDS|length=22800bp|location=Sequence derived from alignment at scaffold_57:452445..482838- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070683 vs. Swiss-Prot (Human)
Match: NEK4 (Serine/threonine-protein kinase Nek4 OS=Homo sapiens GN=NEK4 PE=1 SV=2) HSP 1 Score: 242.276 bits (617), Expect = 1.178e-67 Identity = 123/325 (37.85%), Postives = 198/325 (60.92%), Query Frame = 3
Query: 69 IGAYDQLRLLGKGGCAQVFLVKNKHNGRYFAMKKIELD--PSRRSKTTENVLKEAKLLSSLQHPHIVTCRSYFFDTEKEFFYIVQDFCDDGSIFDRVVDAREAKNPL-PEAVMMKWFVQVVMAVQYIHSQKILHRDIKTQNVFLTKQGVAKLGDFGIAKVMENTIDMAQTAIGTPCYLSPEVCQDMPYSSKADIWALGCLLYEMAVLNYPFLANNIVTLYYKIVKGEYKSLPLKYDTSIHELVDAMLNRNPDNRPSTSAILNMEVVQKYLQQFLVECEDLQKNVNKFVGASKKPADSKVTTPKEAKDSAVAAEVKKLTSKDTGIY 1034
+ AY LR++GKG +V LVK++ +G+ + +KK+ L SR + E +EA+LLS L+HP+IVT + + + YIV FC+ G ++ ++ +E K L PE +++WFVQ+ MA+QY+H + ILHRD+KTQNVFLT+ + K+GD GIA+V+EN DMA T IGTP Y+SPE+ + PY+ K+D+WALGC +YEMA L + F A ++ +L Y+I++G+ +P Y + EL+ ML++ P+ RPS +IL +++ + F +E ++ + N + EA+ + + L+S+ + Y
Sbjct: 3 LAAYCYLRVVGKGSYGEVTLVKHRRDGKQYVIKKLNLRNASSRERRAAE---QEAQLLSQLKHPNIVTYKESWEGGDG-LLYIVMGFCEGGDLYRKL---KEQKGQLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENHCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPMPRDYSPELAELIRTMLSKRPEERPSVRSILRQPYIKRQI-SFFLEATKIKTSKNNIKNGDSQSKPFATVVSGEAESNHEVIHPQPLSSEGSQTY 319 The following BLAST results are available for this feature:
BLAST of TCONS_00070683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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