TCONS_00070694 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070694
Unique NameTCONS_00070694
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1862

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070694 ID=TCONS_00070694|Name=TCONS_00070694|organism=Clytia hemisphaerica|type=transcript|length=1862bp
acaaagggtgtattacatttattgatttgtttgaaaattgaaCTACACTA
TTGACTTTATAATAAGGTTGGAAATGTTGAAAGAGGTTTtccacaaaatc
aaaaattatatacGAATGGATTATTAATTTTCTTGTAAAAAGTTGCAACA
TTGAATCATCCAATCAAGGTAAAAAAAGTTCCTTGCTAAAAGCTTATGTG
CAAACAATTTACCACACTCTTTGCATTCATTCATGATGAATAAAGAAAAG
TCATTGTATTGCTCCATCTAAGGGAGGTGGTGTCATTGGTCTTCCTTTGT
GAGTGACAAGATGTATTGCCAGAACATTTTCTCGCGCAAACGATTTACCA
CATTCATTGCAATTGAAATAATGATGCATCTTTTGATGCCTATTAAGGTG
TTCTCTCCTTGTATAACTTTTTCCACAAACTTCACAATTATGGCTTTTAA
TCTTTAAATGTACAGCATTTTTATGATTCTCAAGATGATCTTTTCTTAAG
AAAGATTTGGCACACAAATCACAGGTATGTGGTGAGAGCCCTTTGTGGAT
TTTATCATGATGTCTTTTAAGATCATTACTATAGTAATAACTTTTACCAC
ATTCCTCGCATTGATATGATTTAATCCCCTTATGGGCACTGTTTACATGC
TGAATAAGTTGGTTTCGATACAAATATGAGTTTTCACATAATTTGCACTT
GTGAGGCGTATTTCCTTCATGCTTATTTTGATGGATTTTAAGATAGTCTT
TTCTGCTAAATGATTTACCACACTCATGACACTCGAATAGTTTTAAACCT
TTATGAACTGAATTGCAATGGCTCTCGAGCCTACTTTTCTTGTAAAATAA
AAGCCCACAATCATTACACTGatgtttttttaaccttttcctCTGGTTTT
TGATTGTACAAATCTCTTCATTATCCATAACCTCCAGTAGAATTTCAACA
GGTTCTGACATCCCTCCACTATTTTGTTTATTTGCGTCCGGTATGTTTGT
AGTGTTTTTTAATAAGTTCTCATCTACGACAGATTGTGCATTTTCAGTAC
ATTCTGAGCTTCGCTTTAGATTTTCCTCCTTTGAGTTTGATTTTGAACTA
CTCTGGGTGAGATTCTTTTCTACAACAACATCAAAACGAAGATCTGTTAT
AGGTATATCCATATCATTCTTGTGAAGTGGGTTATCTCTATCATCTTTGT
TAAGATCTTTATTTACAGTGTTAGCAATACTATAAGAGTCCTTGATAACA
GGGAAATTGTCAATGCTTTCTGTACTTACTTGATTTTGATAGTTCAAAAC
TGGTGCTTTGAAAGTTCTTTGATTATGATTGTGGTTAACTGCATCAATCA
GGCCTAGCAAGAGATTTCCAGCTTCTTTTTGCTGTTCAGAATTCCTATTA
ATCAACTGTAGTGGTTTACTCAAATTTCTGCTTGAAGGAGGATTAATTCT
ACGGTTCTTTGTTTTTGGTTTAAACAGGAAACCATTTCCACGAACATCAG
TTAATTCTAAAGTAGTAGCAAAATTTTCCATCAACACTTGGCAATTACCA
ATGACTTTTTGACCACTCTTGATTTCAAATGTCATCTTGATTGGAGCTGA
AACATCAGTTGTTTCCAATAGTATTGAGGTTTTCTCAATCTTCAATTCAT
GgttattcatttttatttctaatACAAATcctctaaaataaaaaatagaa
gaTGATGATgagattaattttgaaaaacttttcttaaaaaaaatgattga
ataataGAAAAACTGTTTGTCAATGGTGTTAATTTTATTGCCCTATTAAT
TCGAATAAACATCCCGTCGAATAAACTCCTTTCCTCATTTGAGGAAAGAT
tttcaataaacg
Run BLAST on NCBI

transcript from alignment at scaffold_57:611953..613880-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070694 ID=TCONS_00070694|Name=TCONS_00070694|organism=Clytia hemisphaerica|type=transcript|length=1928bp|location=Sequence derived from alignment at scaffold_57:611953..613880- (Clytia hemisphaerica)
ACAAAGGGTGTATTACATTTATTGATTTGTTTGAAAATTGAACTACACTA
TTGACTTTATAATAAGGTTGGAAATGTTGAAAGAGGTTTTCCACAAAATC
AAAAATTATATACGAATGGATTATTAATTTTCTTGTAAAAAGTTGCAACA
TTGAATCATCCAATCAAGGTAAAAAAAGTTCCTTGCTAAAAGCTTATGTG
CAAACAATTTACCACACTCTTTGCATTCATTCATGATGAATAAAGAAAAG
TCATTGTATTGCTCCATCTAAGGGAGGTGGTGTCATTGGTCTTCCTTTGT
GAGTGACAAGATGTATTGCCAGAACATTTTCTCGCGCAAACGATTTACCA
CATTCATTGCAATTGAAATAATGATGGATCTTTTGATGCNCATTTTCTCG
CGCAAACGATTTACCACATTCATTGCAATTGAAATAATGATGCATCTTTT
GATGCCTATTAAGGTGTTCTCTCCTTGTATAACTTTTTCCACAAACTTCA
CAATTATGGCTTTTAATCTTTAAATGTACAGCATTTTTATGATTCTCAAG
ATGATCTTTTCTTAAGAAAGATTTGGCACACAAATCACAGGTATGTGGTG
AGAGCCCTTTGTGGATTTTATCATGATGTCTTTTAAGATCATTACTATAG
TAATAACTTTTACCACATTCCTCGCATTGATATGATTTAATCCCCTTATG
GGCACTGTTTACATGCTGAATAAGTTGGTTTCGATACAAATATGAGTTTT
CACATAATTTGCACTTGTGAGGCGTATTTCCTTCATGCTTATTTTGATGG
ATTTTAAGATAGTCTTTTCTGCTAAATGATTTACCACACTCATGACACTC
GAATAGTTTTAAACCTTTATGAACTGAATTGCAATGGCTCTCGAGCCTAC
TTTTCTTGTAAAATAAAAGCCCACAATCATTACACTGATGTTTTTTTAAC
CTTTTCCTCTGGTTTTTGATTGTACAAATCTCTTCATTATCCATAACCTC
CAGTAGAATTTCAACAGGTTCTGACATCCCTCCACTATTTTGTTTATTTG
CGTCCGGTATGTTTGTAGTGTTTTTTAATAAGTTCTCATCTACGACAGAT
TGTGCATTTTCAGTACATTCTGAGCTTCGCTTTAGATTTTCCTCCTTTGA
GTTTGATTTTGAACTACTCTGGGTGAGATTCTTTTCTACAACAACATCAA
AACGAAGATCTGTTATAGGTATATCCATATCATTCTTGTGAAGTGGGTTA
TCTCTATCATCTTTGTTAAGATCTTTATTTACAGTGTTAGCAATACTATA
AGAGTCCTTGATAACAGGGAAATTGTCAATGCTTTCTGTACTTACTTGAT
TTTGATAGTTCAAAACTGGTGCTTTGAAAGTTCTTTGATTATGATTGTGG
TTAACTGCATCAATCAGGCCTAGCAAGAGATTTCCAGCTTCTTTTTGCTG
TTCAGAATTCCTATTAATCAACTGTAGTGGTTTACTCAAATTTCTGCTTG
AAGGAGGATTAATTCTACGGTTCTTTGTTTTTGGTTTAAACAGGAAACCA
TTTCCACGAACATCAGTTAATTCTAAAGTAGTAGCAAAATTTTCCATCAA
CACTTGGCAATTACCAATGACTTTTTGACCACTCTTGATTTCAAATGTCA
TCTTGATTGGAGCTGAAACATCAGTTGTTTCCAATAGTATTGAGGTTTTC
TCAATCTTCAATTCATGGTTATTCATTTTTATTTCTAATACAAATCCTCT
AAAATAAAAAATAGAAGATGATGATGAGATTAATTTTGAAAAACTTTTCT
TAAAAAAAATGATTGAATAATAGAAAAACTGTTTGTCAATGGTGTTAATT
TTATTGCCCTATTAATTCGAATAAACATCCCGTCGAATAAACTCCTTTCC
TCATTTGAGGAAAGATTTTCAATAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043979XLOC_043979Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070694-exon-scaffold_57-1575043694:613530..613880TCONS_00070694-exon-scaffold_57-1575043694:613530..613880Clytia hemisphaericaexon
TCONS_00070694-exon-scaffold_57-1575043694:611953..613463TCONS_00070694-exon-scaffold_57-1575043694:611953..613463Clytia hemisphaericaexon
TCONS_00070694-exon-scaffold_57-1510915933:613530..613880TCONS_00070694-exon-scaffold_57-1510915933:613530..613880Clytia hemisphaericaexon
TCONS_00070694-exon-scaffold_57-1510915933:611953..613463TCONS_00070694-exon-scaffold_57-1510915933:611953..613463Clytia hemisphaericaexon
TCONS_00070694-exon-scaffold_57-1491911889:613530..613880TCONS_00070694-exon-scaffold_57-1491911889:613530..613880Clytia hemisphaericaexon
TCONS_00070694-exon-scaffold_57-1491911889:611953..613463TCONS_00070694-exon-scaffold_57-1491911889:611953..613463Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:611953..613880 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.91737	4.00458	0.245649	0.107709	0.218328	3.95404e-05	1.61281	0.650864	0.352393	0.255135	0.234887	0.11801	0.561345	0.21499	0.372489	0.110703	0.474639	0.182752	0.00888687	0	0.646175	0.682073	9.0199	6.62114	2.67681	2.31118	1.09775	1.08287	1.41968	3.46867
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00070694 vs. Swiss-Prot (Human)
Match: ZNF10 (Zinc finger protein 10 OS=Homo sapiens GN=ZNF10 PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 4.001e-38
Identity = 82/201 (40.80%), Postives = 115/201 (57.21%), Query Frame = -2 
Query:  293 RLKKHQCNDCGLLFYKKSRLESHCNSVHKGLKLFECHECGKSFSRKDYLKIHQNKHEGNTPHKCKLCENSYLYRNQLIQHVNSAHKGIKSYQCEECGKSYYYSNDLKRHHDKIHKGLSPHTCDLCAKSFLRKDHLENHKNAVHLKIKSHNCEVCGKSYTRREHLNRHQKMHHY---FNCNECGKSFARENVLAIHLVTHKG 886
            R K ++C +CG  F  +S L  H   +H G K +EC ECGKSFSR  +L  HQ  H G  P++CK C  S+ + + L+ H    H G K Y C +CGKS+ +S+ L R H + H G  P+ C  C KSF +  HL  H+   H++++ + C  CGKSY++R HL  H ++H     F C +CGK F+R + L  H  TH G
Sbjct:  261 REKPYECKECGKFFSWRSNLTRH-QLIHTGEKPYECKECGKSFSRSSHLIGHQKTHTGEEPYECKECGKSFSWFSHLVTH-QRTHTGDKLYTCNQCGKSFVHSSRLIR-HQRTHTGEKPYECPECGKSFRQSTHLILHQR-THVRVRPYECNECGKSYSQRSHLVVHHRIHTGLKPFECKDCGKCFSRSSHLYSHQRTHTG 457

HSP 2 Score: 124.79 bits (312), Expect = 5.196e-30
Identity = 76/197 (38.58%), Postives = 103/197 (52.28%), Query Frame = -2 
Query:  293 HQCNDCGLLFYKKSRLESHCNSVHKGLKLFECHECGKSFSRKDYLKIHQNKHEGNTPHKCKLCENSYLYRNQLIQHVNSAHKGIKSYQCEECGKSYYYSNDLKRHHDKIHKGLSPHTCDLCAKSFLRKDHLENHKNAVHLKIKSHNCEVCGKSYTRREHLNRHQKMHHY---FNCNECGKSFARENVLAIHLVTHKG 874
            ++C +CG  F   S L +H    H G KL+ C++CGKSF     L  HQ  H G  P++C  C  S+     LI H    H  ++ Y+C ECGKSY   + L  HH +IH GL P  C  C K F R  HL +H+   H   K + C  CGKS+++   L  HQ++H     + C +CGK+F R+N L  H   H G
Sbjct:  321 YECKECGKSFSWFSHLVTH-QRTHTGDKLYTCNQCGKSFVHSSRLIRHQRTHTGEKPYECPECGKSFRQSTHLILH-QRTHVRVRPYECNECGKSYSQRSHLVVHH-RIHTGLKPFECKDCGKCFSRSSHLYSHQR-THTGEKPYECHDCGKSFSQSSALIVHQRIHTGEKPYECCQCGKAFIRKNDLIKHQRIHVG 513

HSP 3 Score: 124.405 bits (311), Expect = 7.679e-30
Identity = 72/199 (36.18%), Postives = 108/199 (54.27%), Query Frame = -2 
Query:  293 KKHQCNDCGLLFYKKSRLESHCNSVHKGLKLFECHECGKSFSRKDYLKIHQNKHEGNTPHKCKLCENSYLYRNQLIQHVNSAHKGIKSYQCEECGKSYYYSNDLKRHHDKIHKGLSPHTCDLCAKSFLRKDHLENHKNAVHLKIKSHNCEVCGKSYTRREHLNRHQKMH---HYFNCNECGKSFARENVLAIHLVTHKG 880
            K + CN CG  F   SRL  H    H G K +EC ECGKSF +  +L +HQ  H    P++C  C  SY  R+ L+ H +  H G+K ++C++CGK +  S+ L  H  + H G  P+ C  C KSF +   L  H+  +H   K + C  CGK++ R+  L +HQ++H     + CN+CG  F++ +   +H + H G
Sbjct:  347 KLYTCNQCGKSFVHSSRLIRH-QRTHTGEKPYECPECGKSFRQSTHLILHQRTHVRVRPYECNECGKSYSQRSHLVVH-HRIHTGLKPFECKDCGKCFSRSSHLYSH-QRTHTGEKPYECHDCGKSFSQSSALIVHQR-IHTGEKPYECCQCGKAFIRKNDLIKHQRIHVGEETYKCNQCGIIFSQNSPFIVHQIAHTG 541

HSP 4 Score: 97.0561 bits (240), Expect = 5.595e-21
Identity = 60/171 (35.09%), Postives = 90/171 (52.63%), Query Frame = -2 
Query:  374 RLKKHQCNDCGLLFYKKSRLESHCNSVHKGLKLFECHECGKSFSRKDYLKIHQNKHEGNTPHKCKLCENSYLYRNQLIQHVNSAHKGIKSYQCEECGKSYYYSNDLKRHHDKIHKGLSPHTCDLCAKSFLRKDHLENHKNAVHLKIKSHNCEVCGKSYTRREHLNRHQKMH 886
            R++ ++CN+CG  + ++S L  H + +H GLK FEC +CGK FSR  +L  HQ  H G  P++C  C  S+   + LI H    H G K Y+C +CGK++   NDL + H +IH G   + C+ C   F +      H+ A H   +   C  CG +     +L  +Q  H
Sbjct:  401 RVRPYECNECGKSYSQRSHLVVH-HRIHTGLKPFECKDCGKCFSRSSHLYSHQRTHTGEKPYECHDCGKSFSQSSALIVH-QRIHTGEKPYECCQCGKAFIRKNDLIK-HQRIHVGEETYKCNQCGIIFSQNSPFIVHQIA-HTGEQFLTCNQCGTALVNTSNLIGYQTNH 567

HSP 5 Score: 96.6709 bits (239), Expect = 7.606e-21
Identity = 63/174 (36.21%), Postives = 90/174 (51.72%), Query Frame = -2 
Query:  275 ECGKSFSRKDYLKIHQNKHEGNTPHKCKLCENSYLYRNQLIQHVNSAHKGI---KSYQCEECGKSYYYSNDLKRHHDKIHKGLSPHTCDLCAKSFLRKDHLENHKNAVHLKIKSHNCEVCGKSYTRREHLNRHQKMH---HYFNCNECGKSFARENVLAIHLVTHKG-RPMTPP 775
            ECG++F +  +L      H G+  +KC   +NS  + + L        KGI   K Y+C+ECGK + + ++L R H  IH G  P+ C  C KSF R  HL  H+   H   + + C+ CGKS++   HL  HQ+ H     + CN+CGKSF   + L  H  TH G +P   P
Sbjct:  214 ECGQTFCQNIHLIQFARTHTGDKSYKCPDNDNSLTHGSSL-----GISKGIHREKPYECKECGKFFSWRSNLTR-HQLIHTGEKPYECKECGKSFSRSSHLIGHQK-THTGEEPYECKECGKSFSWFSHLVTHQRTHTGDKLYTCNQCGKSFVHSSRLIRHQRTHTGEKPYECP 380
The following BLAST results are available for this feature:
BLAST of TCONS_00070694 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZNF104.001e-3840.80Zinc finger protein 10 OS=Homo sapiens GN=ZNF10 PE... [more]
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