Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070715 ID=TCONS_00070715|Name=TCONS_00070715|organism=Clytia hemisphaerica|type=transcript|length=1429bpRun BLAST on NCBI protein sequence of TCONS_00070715-protein >TCONS_00070715-protein ID=TCONS_00070715-protein|Name=TCONS_00070715-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp MVYFCNLSHQSEMINSSEIILMLKEEPADDIEVSNDVNFPATVSSEGSPERun BLAST on NCBI transcript from alignment at scaffold_57:11289..12717 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070715 ID=TCONS_00070715|Name=TCONS_00070715|organism=Clytia hemisphaerica|type=transcript|length=1429bp|location=Sequence derived from alignment at scaffold_57:11289..12717 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_57:11289..12717 >TCONS_00070715 ID=TCONS_00070715|Name=TCONS_00070715|organism=Clytia hemisphaerica|type=CDS|length=1089bp|location=Sequence derived from alignment at scaffold_57:11289..12717 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070715 vs. Swiss-Prot (Human)
Match: ZN347 (Zinc finger protein 347 OS=Homo sapiens GN=ZNF347 PE=1 SV=2) HSP 1 Score: 187.963 bits (476), Expect = 1.343e-51 Identity = 108/286 (37.76%), Postives = 149/286 (52.10%), Query Frame = -1 Query: 212 KSYKCNVCGKSMTTRSNLNKHLFIHNXXXXXXXXXXXKAFARREYMMRHLETHSSLKPHKCDKCSWCFIQKKHLIKHAITHLKEKHFKCTECGKAFAAKMYVKNHMETHKKDRSYECESCHRTYTRKESLKAHIASHHNPMSKLETVNTKEDQFVTFSTYQPLDLVQNFPI--AEPSDDKPFQCHVCGKCVTTKSNLNKHLFIHNDTKIFKCEECGKTFARREYLVRHIESHRGVRPFKCEVCGNAFTQKKHLKRHAVTHTGVKPFECKECGRCFAFKEYLKSHMM 1063 K YKC CGK+ TRSNL H IH +K +KC +CGK F+R + +H + H+ KP+KC++C F Q HL++H H EK +KC ECGKAF A+ + H TH ++ Y+C C + +T+ L H H T E + + + + I + +KP++CH CGK S+L +H IH K +KC ECGK F L H H G +P+KC CG FTQ HL H HTGVKP+ C ECG+ F+ L +H + Sbjct: 287 KPYKCYECGKAFRTRSNLTTHQVIHTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPYKCNECGKVFTQNSHLTNHWRIH-----------TGEKPYKCNECGKAFGVRSSLAIHLVIHTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPYMCNECGKAFSVYSSLTTHQV 561 HSP 2 Score: 179.489 bits (454), Expect = 1.171e-48 Identity = 108/285 (37.89%), Postives = 147/285 (51.58%), Query Frame = -1 Query: 215 KSYKCNVCGKSMTTRSNLNKHLFIHNXXXXXXXXXXXKAFARREYMMRHLETHSSLKPHKCDKCSWCFIQKKHLIKHAITHLKEKHFKCTECGKAFAAKMYVKNHMETHKKDRSYECESCHRTYTRKESLKAHIASHHNPMSKLETVNTKEDQFVTFSTYQPLDLVQNFPIAEP--SDDKPFQCHVCGKCVTTKSNLNKHLFIHNDTKIFKCEECGKTFARREYLVRHIESHRGVRPFKCEVCGNAFTQKKHLKRHAVTHTGVKPFECKECGRCFAFKEYLKSHM 1063 K YKCN CGK T S+L +H IH +K +KC +CGKAF R + H THS KP+KC++C F Q HL H H EK +KC ECGKAF + + H+ H ++ Y+C C + + R +H+A H + ++T E + + N + + +KP++C+ CGK T S+L H IH K + C ECGK F+ L H H G +P+KC CG FTQ HL RH HTG KP++C ECG+ F YL H Sbjct: 343 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPYKCNECGKAFGVRSSLAIHLVIHTGEKPYKCHECGKVFRRN----SHLARH-------QLIHTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPYKCNECGKVFRHNSYLSRHQ 616 HSP 3 Score: 170.244 bits (430), Expect = 2.107e-45 Identity = 106/316 (33.54%), Postives = 155/316 (49.05%), Query Frame = -1 Query: 185 KSYKCNVCGKSMTTRSNLNKHLFIHNXXXXXXXXXXXKAFARREYMMRHLETHSSLKPHKCDKCSWCFIQKKHLIKHAITHLKEKHFKCTECGKAFAAKMYVKNHMETHKKDRSYECESCHRTYTRKESLKAH-----------------IASHHNPMSKLETVNTKEDQFV------TFSTYQPLDLVQNFPIAEPSDDKPFQCHVCGKCVTTKSNLNKHLFIHNDTKIFKCEECGKTFARREYLVRHIESHRGVRPFKCEVCGNAFTQKKHLKRHAVTHTGVKPFECKECGRCFAFKEYLKSHMMKTHFKQQFK 1063 K YKCN CGK+ RS+L HL IH +K +KC +CGK F R ++ RH H+ KP+KC++C F +L H + H EK +KC ECGK F ++ NH H + Y C C + ++ SL H + + ++ +++ ++T E + F L Q E KP++ + GK + SNL H IH K +KC ECGK F + +L RH H G +P++C CG AF+Q L RH HTG KP+EC +CG+ F+ + L +H K+ +K Sbjct: 427 KPYKCNECGKAFGVRSSLAIHLVIHTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPYKCNECGKVFRHNSYLSRHQRIHTGE----KPYKYNEYGKAFSEHSNLTTHQVIHTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPYK 738 HSP 4 Score: 165.236 bits (417), Expect = 1.288e-43 Identity = 100/304 (32.89%), Postives = 146/304 (48.03%), Query Frame = -1 Query: 215 KSYKCNVCGKSMTTRSNLNKHLFIHNXXXXXXXXXXXKAFARREYMMRHLETHSSLKPHKCDKCSWCFIQKKHLIKHAITHLKEKHFKCTECGKAFAAKMYVKNHMETHKKDRSYECESCHRTYTRKESLKAHIASH-----------------HNPMSKLETVNTKEDQFVTFSTYQPLDLVQNFPIAEP----SDDKPFQCHVCGKCVTTKSNLNKHLFIHNDTKIFKCEECGKTFARREYLVRHIESHRGVRPFKCEVCGNAFTQKKHLKRHAVTHTGVKPFECKECGRCFAFKEYLKSHM 1063 K YKCN CGK+ SNL H IH +K +KC +CGK F + ++ H H+ +KP+ C++C F L H + H EK +KC ECGK F ++ H H ++ Y+C C + + L H H H+ ++ + ++T E + + QN +A + KP+QC+ CGK + S L +H +H K ++C +CGK F+ R L H H G +P+KC CG FTQ HL RH HTG KP++C ECG+ F+ L H Sbjct: 483 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPYKYNEYGKAFSEHSNLTTHQVIHTGEKPYKCNECGKVF--TQNSHLARHRRVHTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPYKCNECGKAFSQTSKLARHQ 784 HSP 5 Score: 157.918 bits (398), Expect = 3.727e-41 Identity = 101/288 (35.07%), Postives = 144/288 (50.00%), Query Frame = -1 Query: 215 YKCNVCGKSMTTRSNLNKHLFIHNXXXXXXXXXXXKAFARREYMMRHLETHSSLKPHKCDKCSWCFIQKKHLIKHAITHLKEKHFKCTECGKAFAAKMYVKNHMETHKKDRSYECESCHRTYTRKESLKAHIASHH-------NPMSKLETVNTKEDQFVTFSTYQPLDLVQNFPIAEPSDDKPFQCHVCGKCVTTKSNLNKHLFIHNDTKIFKCEECGKTFARREYLVRHIESHRGVRPFKCEVCGNAFTQKKHLKRHAVTHTGVKPFECKECGRCFAFKEYLKSHM 1057 YK N CG S+L H H ++K +KC +CGKAF R + H H+ K +KC++C F + L +H H EK +KC ECGK F ++ H H ++ Y+C C + + + SL H A+H N K+ T N+ L ++ I + +KP++C+ CGK +S+L HL IH K +KC ECGK F R +L RH H G +P+KC CG AF +L H V HTG KP++C ECG+ F +L +H Sbjct: 261 YKSNGCGMVFPQNSHLASHQRSHTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPYKCNECGKVFTQNS--------------HLTNHWRIH--TGEKPYKCNECGKAFGVRSSLAIHLVIHTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPYKCNECGKVFTQNSHLANHQ 532 HSP 6 Score: 157.147 bits (396), Expect = 7.001e-41 Identity = 104/302 (34.44%), Postives = 146/302 (48.34%), Query Frame = -1 Query: 215 KSYKCNVCGKSMTTRSNLNKHLFIHNXXXXXXXXXXXKAFARREYMMRHLETHSSLKPHKCDKCSWCFIQKKHLIKHAITHLKEKHFKCTECGKAFAAKMYVKNHMETHKKDRSYECESCHRTYTRKESLKAHIASHH-------NPMSKLETVNTKEDQFVTFST----YQPLDLVQNFPIAEP--------SDDKPFQCHVCGKCVTTKSNLNKHLFIHNDTKIFKCEECGKTFARREYLVRHIESHRGVRPFKCEVCGNAFTQKKHLKRHAVTHTGVKPFECKECGRCFAFKEYLKSHM 1063 K YKCN CGK T S+L H IH K + C +CGKAF+ + H H+ KP+KC++C F Q HL +H H EK +KC ECGK F Y+ H H ++ Y+ + ++ +L H H N K+ T N+ + T YQ + + F + +KP++C+ CGK + +S+L H IH K +KC ECGK F + +L RH H G +P+KC CG AF+Q L RH HTG KP+ ECG+ F+ L +H Sbjct: 511 KPYKCNECGKVFTQNSHLANHQRIHTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPYKYNEYGKAFSEHSNLTTHQVIHTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPY---ECGKPFSICSSLTTHQ 809 HSP 7 Score: 147.902 bits (372), Expect = 9.051e-38 Identity = 91/303 (30.03%), Postives = 141/303 (46.53%), Query Frame = -1 Query: 212 KSYKCNVCGKSMTTRSNLNKHLFIHNXXXXXXXXXXXKAFARREYMMRHLETHSSLKPHKCDKCSWCFIQKKHLIKHAITHLKEKHFKCTECGKAFAAKMYVKNHMETHKKDRSYECESCHRTYTRKESLKAH-----------------IASHHNPMSKLETVNTKEDQFVTFSTYQPLDLVQNFPI--AEPSDDKPFQCHVCGKCVTTKSNLNKHLFIHNDTKIFKCEECGKTFARREYLVRHIESHRGVRPFKCEVCGNAFTQKKHLKRHAVTHTGVKPFECKECGRCFAFKEYLKSHMM 1063 K Y+CN KS S+++ + K +K K F + + + ++ P+K + C F Q HL H +H KEK +KC ECGKAF + + H H ++ Y+C C + ++R L H + + ++ + + ++T E + + + I A S +KP++C+ CGK T S+L H IH K +KC ECGK F R L H+ H G +P+KC CG F + HL RH + HTG KP++C ECG+ F L +H + Sbjct: 203 KIYECNQVEKSFNNNSSVSPPQQMPYNVKTHISKKYLKDFISSLLLTQGQKANNWGSPYKSNGCGMVFPQNSHLASHQRSHTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPYKCNECGKAFGVRSSLAIHLVIHTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPYKCNECGKAFRAHSNLTTHQV 505 HSP 8 Score: 120.168 bits (300), Expect = 9.289e-29 Identity = 82/247 (33.20%), Postives = 119/247 (48.18%), Query Frame = -1 Query: 344 KSYKCNVCGKSMTTRSNLNKHLFIHNXXXXXXXXXXXKAFARREYMMRHLETHSSLKPHKCDKCSWCFIQKKHLIKHAITHLKEKHFKCTECGKAFAAKMYVKNHMETHKKDRSYECESCHRTYTRKESLKAHIASHH-------NPMSKLETVNTKEDQFVTFSTYQPLDLVQNFPIAEPSDDKPFQCHVCGKCVTTKSNLNKHLFIHNDTKIFKCEECGKTFARREYLVRHIESHRGVRPFKCEV 1063 K YKCN CGK S L++H IH +K +K + GKAF+ + H H+ KP+KC++C F Q HL +H H K ++C ECGKAF+ + H H ++ YEC C + ++ + SL H A H N K+ T N+ L ++ I + +KP++C+ CGK + S L +H IH K + ECGK F+ L H H G +P+KC V Sbjct: 595 KPYKCNECGKVFRHNSYLSRHQRIHTGEKPYKYNEYGKAFSEHSNLTTHQVIHTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPYKCNECGKVFTQNS--------------HLARHRGIH--TGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPY---ECGKPFSICSSLTTHQTIHTGGKPYKCNV 822 The following BLAST results are available for this feature:
BLAST of TCONS_00070715 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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