TCONS_00070719 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070719
Unique NameTCONS_00070719
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1783

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070719 ID=TCONS_00070719|Name=TCONS_00070719|organism=Clytia hemisphaerica|type=transcript|length=1783bp
AAAACTTAGAATATCTAAGTtcatataaagaaaaaaagtgtacttgAAAG
TTGCCAGAAATACAAGATTGACATTTACATATACCTAGATCTGCGATAta
ggaatttttcaaattcagttaTTCCTTAGCTATATATTCCAAGGATAAAT
ACCttgtaaattgtaaataaaaaaaatctaataaaaataGTAATAAATAA
AAGagttacaaaaaaataatataaaaaaacgtaaaaaaaaacgtaaaaaa
aaacaaaatacaatttttagaGTAATATTTTCATAAGATACACATTTTGA
TATATATACTgtttaaaatactaaaaatttgcTGCCATATTTTCTGCTCA
ATGAAAAACTATTTCATAATAATCTTAAAAGTAGACACGAACGCCGTAAG
CTACACCCATTTTACAAAAACAATTGATAAAGAAGTTCTTGGCTCTCAAA
ATACTCgagaattttctttttatttacattaTATTTATGTGTAAAATTCT
TACCACAATCATTGCATTTAACAGAAGGTCTTAGTTTAAAGGACTGCAGC
GACTGTAAAGAgcatcagaaaaaaaaataactaaaGTTCAGGTTAGACGA
AAAATCACCAGTATTGATAATAGGAAGTACATCTTCTGATACACATTGGT
CCATCAAATAATTTCAACAATACCAATAAACGGATTCTTAGCACTGGATA
GATAGAAAGAACACAGGCAATTGAACACCTTTATATTCAGTAATTCTCGA
CTAGATGAGTAGATACCAGAGCGTCGAACTACTTCCAAAAATTCCAAGTA
CATCATCACTCAGTTCACTTGTAATCAATTTCTGTTCGATTATTAGCGAA
ATCCGAGTTCAAATAGAGAGATTCCACCAAACAAAAGAAGGGATATTCCC
CTTTGTATATACATTGAGAAATCTAATAGTTTTTTCCATACTCAAGACGA
AGAATTGCCCTCTTTACAAACTAAAAGATGTTTGTTAAGAGGATGCTTCT
GTGAATAACATTTACCACAGTAATCGCACTTGAATGGCTTAAGACCAGAA
TGGGCAGCCAAATGTCGTTTCAAGTTACCCTTACGGGAGAATGTCTTTTC
ACAAATGGTGCAATTGAATGGTTTAATGCCTGTATGAATATCCATGTGAG
CTTTAAGATGACCCTTTTGTGTAAAGCTCTTACCACATTCCTCGCACTTA
AAAGGTCGTATTCCTGAATGTGTATCAAGATGAGCTTTCAAGTGACTCTT
GGATGAATAACATTTTCCACAAAGATCACAACGAAATGCGTCCGATGTCG
TTCTGGAAGAGGTTTGAGTCGGCTGTGATGGTACTGGTGCCAAGGCTTCA
CTTGTCATATTCGGAACAACCTTGAAAGGTGacgaaccaatcaaatattg
AGCTTGGTTGGGATACACTAGCCCGTTTATAGTCTTATTGTTAAATCTAC
CATTAACCATATTCAATGTAGCCGTGTGGAAAGGATTGCCAACCAATGTC
GGTAGGTACGGTGCAGTATACATATGCTGACTCGCATCTAATTTCTCTTT
CATGAATGGGATATTGTAGAAGGGTGGACCGATCATTGATTCAGGTGTAA
CGTTATACATCTGTTGGAATGTTTGTTTAGCATCGAAACTGACATCTAAG
GATGTGTTGGTTTTTGGTAGATATGGATTTTCATCTGATTCatccaattc
tttttttatttcaatcttgaTGTCGGTTTCACtcatttttctttgttgtt
tttggtTATTGttaattcttgtttttttttagt
Run BLAST on NCBI

protein sequence of TCONS_00070719-protein

>TCONS_00070719-protein ID=TCONS_00070719-protein|Name=TCONS_00070719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
MSETDIKIEIKKELDESDENPYLPKTNTSLDVSFDAKQTFQQMYNVTPES
MIGPPFYNIPFMKEKLDASQHMYTAPYLPTLVGNPFHTATLNMVNGRFNN
KTINGLVYPNQAQYLIGSSPFKVVPNMTSEALAPVPSQPTQTSSRTTSDA
FRCDLCGKCYSSKSHLKAHLDTHSGIRPFKCEECGKSFTQKGHLKAHMDI
HTGIKPFNCTICEKTFSRKGNLKRHLAAHSGLKPFKCDYCGKCYSQKHPL
NKHLLVCKEGNSSS
Run BLAST on NCBI

transcript from alignment at scaffold_57:20583..22365

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070719 ID=TCONS_00070719|Name=TCONS_00070719|organism=Clytia hemisphaerica|type=transcript|length=1783bp|location=Sequence derived from alignment at scaffold_57:20583..22365 (Clytia hemisphaerica)
actaaaaaaaaacaagaattaaCAATAaccaaaaacaacaaagaaaaatg
aGTGAAACCGACAtcaagattgaaataaaaaaagaattggatGAATCAGA
TGAAAATCCATATCTACCAAAAACCAACACATCCTTAGATGTCAGTTTCG
ATGCTAAACAAACATTCCAACAGATGTATAACGTTACACCTGAATCAATG
ATCGGTCCACCCTTCTACAATATCCCATTCATGAAAGAGAAATTAGATGC
GAGTCAGCATATGTATACTGCACCGTACCTACCGACATTGGTTGGCAATC
CTTTCCACACGGCTACATTGAATATGGTTAATGGTAGATTTAACAATAAG
ACTATAAACGGGCTAGTGTATCCCAACCAAGCTcaatatttgattggttc
gtCACCTTTCAAGGTTGTTCCGAATATGACAAGTGAAGCCTTGGCACCAG
TACCATCACAGCCGACTCAAACCTCTTCCAGAACGACATCGGACGCATTT
CGTTGTGATCTTTGTGGAAAATGTTATTCATCCAAGAGTCACTTGAAAGC
TCATCTTGATACACATTCAGGAATACGACCTTTTAAGTGCGAGGAATGTG
GTAAGAGCTTTACACAAAAGGGTCATCTTAAAGCTCACATGGATATTCAT
ACAGGCATTAAACCATTCAATTGCACCATTTGTGAAAAGACATTCTCCCG
TAAGGGTAACTTGAAACGACATTTGGCTGCCCATTCTGGTCTTAAGCCAT
TCAAGTGCGATTACTGTGGTAAATGTTATTCACAGAAGCATCCTCTTAAC
AAACATCTTTTAGTTTGTAAAGAGGGCAATTCTTCGTCTTGAGTATGGAA
AAAACTATTAGATTTCTCAATGTATATACAAAGGGGAATATCCCTTCTTT
TGTTTGGTGGAATCTCTCTATTTGAACTCGGATTTCGCTAATAATCGAAC
AGAAATTGATTACAAGTGAACTGAGTGATGATGTACTTGGAATTTTTGGA
AGTAGTTCGACGCTCTGGTATCTACTCATCTAGTCGAGAATTACTGAATA
TAAAGGTGTTCAATTGCCTGTGTTCTTTCTATCTATCCAGTGCTAAGAAT
CCGTTTATTGGTATTGTTGAAATTATTTGATGGACCAATGTGTATCAGAA
GATGTACTTCCTATTATCAATACTGGTGATTTTTCGTCTAACCTGAACtt
tagttatttttttttctgatgcTCTTTACAGTCGCTGCAGTCCTTTAAAC
TAAGACCTTCTGTTAAATGCAATGATTGTGGTAAGAATTTTACACATAAA
TAtaatgtaaataaaaagaaaattctcGAGTATTTTGAGAGCCAAGAACT
TCTTTATCAATTGTTTTTGTAAAATGGGTGTAGCTTACGGCGTTCGTGTC
TACTTTTAAGATTATTATGAAATAGTTTTTCATTGAGCAGAAAATATGGC
AgcaaatttttagtattttaaacAGTATATATATCAAAATGTGTATCTTA
TGAAAATATTACtctaaaaattgtattttgtttttttttacgtttttttt
tacgtttttttatattatttttttgtaactCTTTTATTTATTACtatttt
tattagattttttttatttacaatttacaaGGTATTTATCCTTGGAATAT
ATAGCTAAGGAAtaactgaatttgaaaaattcctaTATCGCAGATCTAGG
TATATGTAAATGTCAATCTTGTATTTCTGGCAACTTTcaagtacactttt
tttctttatatgaACTTAGATATTCTAAGTTTT

Coding sequence (CDS) from alignment at scaffold_57:20583..22365

>TCONS_00070719 ID=TCONS_00070719|Name=TCONS_00070719|organism=Clytia hemisphaerica|type=CDS|length=795bp|location=Sequence derived from alignment at scaffold_57:20583..22365 (Clytia hemisphaerica)
atgaGTGAAACCGACAtcaagattgaaataaaaaaagaattggatGAATC
AGATGAAAATCCATATCTACCAAAAACCAACACATCCTTAGATGTCAGTT
TCGATGCTAAACAAACATTCCAACAGATGTATAACGTTACACCTGAATCA
ATGATCGGTCCACCCTTCTACAATATCCCATTCATGAAAGAGAAATTAGA
TGCGAGTCAGCATATGTATACTGCACCGTACCTACCGACATTGGTTGGCA
ATCCTTTCCACACGGCTACATTGAATATGGTTAATGGTAGATTTAACAAT
AAGACTATAAACGGGCTAGTGTATCCCAACCAAGCTcaatatttgattgg
ttcgtCACCTTTCAAGGTTGTTCCGAATATGACAAGTGAAGCCTTGGCAC
CAGTACCATCACAGCCGACTCAAACCTCTTCCAGAACGACATCGGACGCA
TTTCGTTGTGATCTTTGTGGAAAATGTTATTCATCCAAGAGTCACTTGAA
AGCTCATCTTGATACACATTCAGGAATACGACCTTTTAAGTGCGAGGAAT
GTGGTAAGAGCTTTACACAAAAGGGTCATCTTAAAGCTCACATGGATATT
CATACAGGCATTAAACCATTCAATTGCACCATTTGTGAAAAGACATTCTC
CCGTAAGGGTAACTTGAAACGACATTTGGCTGCCCATTCTGGTCTTAAGC
CATTCAAGTGCGATTACTGTGGTAAATGTTATTCACAGAAGCATCCTCTT
AACAAACATCTTTTAGTTTGTAAAGAGGGCAATTCTTCGTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043995XLOC_043995Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070719-proteinTCONS_00070719-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070719-exon-scaffold_57-1491911889:20583..22365TCONS_00070719-exon-scaffold_57-1491911889:20583..22365Clytia hemisphaericaexon
TCONS_00070719-exon-scaffold_57-1510915933:20583..22365TCONS_00070719-exon-scaffold_57-1510915933:20583..22365Clytia hemisphaericaexon
TCONS_00070719-exon-scaffold_57-1575043694:20583..22365TCONS_00070719-exon-scaffold_57-1575043694:20583..22365Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:20583..22365 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.0256	10.5747	2.26452	0.974498	56.3128	44.0406	18.0384	18.0386	5.1222	7.56004	5.8373	4.28234	4.5209	4.20161	3.25274	3.4833	10.26	9.14062	3.66923	3.58331	9.20909	9.39184	29.8959	24.5057	4.27527	4.96764	9.80739	8.41946	16.7879	19.7144
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00070719 vs. Swiss-Prot (Human)
Match: ZNF32 (Zinc finger protein 32 OS=Homo sapiens GN=ZNF32 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 8.603e-28
Identity = 50/106 (47.17%), Postives = 70/106 (66.04%), Query Frame = -3 
Query:  969 FRCDLCGKCYSSKSHLKAHLDTHSGIRPFKCEECGKSFTQKGHLKAHMDIHTGIKPFNCTICEKTFSRKGNLKRHLAAHSGLKPFKCDYCGKCYSQKHPLNKHLLV 1286
            F C  CGK + +K +L  H   H+G +P++C+ECGKSF+Q+G L  H  +HTG KP+ C IC+++F  + NL  H   HSG KP++CD CGK +SQK  L  H+ V
Sbjct:  105 FECTHCGKSFRAKGNLVTHQRIHTGEKPYQCKECGKSFSQRGSLAVHERLHTGQKPYECAICQRSFRNQSNLAVHRRVHSGEKPYRCDQCGKAFSQKGSLIVHIRV 210

HSP 2 Score: 102.064 bits (253), Expect = 9.921e-24
Identity = 43/109 (39.45%), Postives = 69/109 (63.30%), Query Frame = -3 
Query:  960 FRCDLCGKCYSSKSHLKAHLDTHSGIRPFKCEECGKSFTQKGHLKAHMDIHTGIKPFNCTICEKTFSRKGNLKRHLAAHSGLKPFKCDYCGKCYSQKHPLNKHLLVCKE 1286
            + C +C + + ++S+L  H   HSG +P++C++CGK+F+QKG L  H+ +HTG+KP+ CT C K+F  +GN   H   H+G  P+ C  CGK ++Q+  L  H   C +
Sbjct:  161 YECAICQRSFRNQSNLAVHRRVHSGEKPYRCDQCGKAFSQKGSLIVHIRVHTGLKPYACTQCRKSFHTRGNCILHGKIHTGETPYLCGQCGKSFTQRGSLAVHQRSCSQ 269

HSP 3 Score: 88.1965 bits (217), Expect = 3.390e-19
Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = -3 
Query:  978 RPFKCEECGKSFTQKGHLKAHMDIHTGIKPFNCTICEKTFSRKGNLKRHLAAHSGLKPFKCDYCGKCYSQKHPLNKH 1208
            R ++C+ECGKSF QKG L  H  IHTG KPF CT C K+F  KGNL  H   H+G KP++C  CGK +SQ+  L  H
Sbjct:   75 RVYECQECGKSFRQKGSLTLHERIHTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKPYQCKECGKSFSQRGSLAVH 151
The following BLAST results are available for this feature:
BLAST of TCONS_00070719 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZNF328.603e-2847.17Zinc finger protein 32 OS=Homo sapiens GN=ZNF32 PE... [more]
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