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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070747 ID=TCONS_00070747|Name=TCONS_00070747|organism=Clytia hemisphaerica|type=transcript|length=3325bp
cgagttaaaaatgCTAATAACgatatatttcaaatataatacaCTTTTGA
CAATGGATTAAAACTGATTTATTGCAGCCttaccatttaaaaaaagatcc
CACGATGGCGTAAAgtaatgtaaattttaattAGAATATCAAGCAATATA
TTAACATTTTAAAAAGTCCCAAACAATCAGCAATCGTTCAATATTTGGTC
TTCAATAAGACTGAAGGTGGAAATAAGTAGCATTCATCTAAAACTTCTGC
TTCTCCATGAATCTGTCTTCAAATCACTCTTCAGTGAAATCACTTACCAC
AAACTTGACTCTATCTATCAACAATTTTTATCCGATAATGATAGGTCTTC
ATTAAGAAAGGCAGTAAAAGTAGGTAGAGTAGCCATAACTTCAGCTTCAT
GAGATATTTCAGAATTCGCATTAACTTCGGCTTCATGAGCTATTTCCGAA
TTCGCATGAATGGTTGTGCTGTGTAAGATTAAATCGCTTTCCAATGAAAA
ACATTCATCACATACTTGACACTTATAGTTATATGTTTTATCTTTCGTGT
GTAGTTTTTTTATATGCCTTCCAAGGACATCTTTTCTTCCAAAagtttta
ccacattcttgacattcaaATGGTCGAAGCCCTTTATGGACTGTATCATG
AtgtattttatatttataattttgTGCAAAACAAAGTCCACAATCCTCGC
ATTCAATatatttgactttttctttcttaaaactttcttcattttgtttG
GAATCTGGCTCCTGTACATTTTCTTTCATCTGCTTCCGTGGCATATTATC
TACCACGCAAACTATTTGGTTTGCTGGAATCGCAGGTGAACATAATTGTA
AATTCAATTGTTTATCTTTTTCGTGAAGTTTCAGATGATTTCCCAAAGTG
TCTTTTCTGCCAAAttttttaccacattcttgacactcAAATGGCCGAAG
CCCTTTATGAACAGTATCATGATGGATTCTAAGTTTTGTACTTGAGCGAT
ATTCGGCACCACAACCATCACATTGAAacttttttatctcttttactATT
CGTCTTGTTTGCCGGTTCTGGTGATTAGAATTTTGTTTTCCTTCAAAGCA
ATCTTCAGTTTCTTCATTATAATTCTTTGGAGATCGTTTTCGAAGCTCTC
TCCCAATCAAGGAATTATTTTCCTCTTGTTCATTGTCACTTTCTTGTTCG
AGATCTTCATCCATTGATGACTGCGACTCAGTTTCGTAATGGCTTGGTTT
AAATGATAaactatttttgctaaaatctcTTAGTTCAAAACCAACATCAA
AACCTTCAAGGGTGAGTTGAAAAGAGCCGATCTTTTTTTCGTTGAATTCA
AGATCAAAAGCCAATTCAAATGGATTAGGTGGTTCTTTGGACCCAGCTTT
TACTGGAAGTTTAATCGATACATTTCCGAATTCGAAATTCATTGTCTTCA
TGTATAGAAATGGCTATGCAATCTTGATGACAAATTTTGATCACAAATTA
ATTGATCGATGCTAATAAATAATTCTTTCACAATTTGTGGTTCCTTTCCT
GTAATTGTTCAatgttatttaatttttttaatttttagcatATTTCTAAA
AGAAGAACAGAGTAGATGTGAATgagtaaaaaaacattttaaagacaGAA
AGACTGAATTCTCGGATACACCCAAATTcgtaaaaataagcaaaactaaT
CNAAACTGAAAAGAAAGcagggaaaataaaaaaattcgaatgtgATGATT
GTGGGGTGCGGTTTGCATCAAACTCAAAGCTCAAAATTCATCATGATTCA
GTTCATAAGAAATTGAAACCATTTGAATGCACTGAATGTGGTAAAAAATT
TGGCAGGAAAGACTATCTTGTTTCTCATCTTAAGATTCACACAAAAGATA
AACCAATTCAGAGTCAAGTTTGTGGTGAAAGATTTTCACAGAAATCTGAT
TTGGTTTTCAATGACAAGAGCACTTACGAAGATTCTGTAACATCAAATGA
AGATGGTACTTCCCTTCCTACCTTCACTGCTCTTAATGAAAACGATGGAC
AATCTATGATTGTTAATGAATAACagcttttaaaagaaagtttgttTTAA
TATTCAGGGGATTCAAAACAATATTGAAGGATATACAAGTATTATGATTG
ACATAATTTGTCAAGAAAGTGTTTAGTTTATTCTTCACAGCTGTTTCTCA
TAATACTAGTGTCTCCTTCAATATTGTTTTGAATCCCCTGAATATTAAaa
caaactttcttttaaaagctGTTATTCATTAACAATCATAGATTGTCCAT
CGTTTTCATTAAGAGCAGTGAAGGTAGGAAGGGAAGTACCATCTTCATTT
GATGTNTTTTCATTAAGACCAGTGAATGTAGGAAGGGAAGTGTCATCTTC
ATTTGATGTTACAGAATCTTCGTAAGTGCTCTTGTCATTGAAAACCAAAT
CAGATTTCTGTGAAAATCTTTCACCACAAACTTGACTCTGAATTGGTTTA
CCTTTTGTGTGAATCTTAAGATGAGAAACAAGATAGTCTTTCCTACCAAA
TTTTTACCACACTCAGTGCATTCAAATGGTTTCAATTTCTTATGAACTGA
ATCATGATGAATTTTGAGCTTTGAGTTTGATGCAAACCGCACCCCACAAT
CATcacattcgaatttttttattttccctgCTTTCTTTTCAGTTTGTGGG
GTCTCATTTTTGTAATCTTCTTTTCCTTCCAAATAATTTTCAGCATCTCC
TCTATAATTCTTAGGAGATTGTTTCCGAAGCTCtctttcacttttctttt
gataatcTTCAACCAAAGGACTATCTTCCTCTTGTTCATTGTCATAAGtt
tgttgtaattttttttcggtcGACTCAATATTAACCTTTTTCTCACAAGT
TTCATTGCTTGGTTTAAATAATATACTATTTTTACCCAAATCTCTGAGTT
CCAAACTGgtatcaaaattttccaaggTGATTTGAAATGAGCCAATTTCT
TTgttattaaatttgatattaAAAGATAATTTGAAAGGATCGGTTGATTC
CTCAGATCCAACTTTCACCGGAAGTTTAATCGACACAtttccaatttcaa
aattcattttagTGTACTTTATGTTGTTTAGAAGAAATATTGATTCAATT
CTTCAAAGCTTGATCAGTTGCAATCTTTCAATACATTGATGATAAACATA
Ccatttttacttattttttttcttcagtttagcaaaacctaaaaaaacaa
ttgaaattcaaaaagattttagaagTTATGGTCTCTAAGAATATACCACA
GTTACCTAAATATGAATTAGAACTA Run BLAST on NCBI protein sequence of TCONS_00070747-protein >TCONS_00070747-protein ID=TCONS_00070747-protein|Name=TCONS_00070747-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
MKTMNFEFGNVSIKLPVKAGSKEPPNPFELAFDLEFNEKKIGSFQLTLEG
FDVGFELRDFSKNSLSFKPSHYETESQSSMDEDLEQESDNEQEENNSLIG
RELRKRSPKNYNEETEDCFEGKQNSNHQNRQTRRIVKEIKKFQCDGCGAE
YRSSTKLRIHHDTVHKGLRPFECQECGKKFGRKDTLGNHLKLHEKDKQLN
LQLCSPAIPANQIVCVVDNMPRKQMKENVQEPDSKQNEESFKKEKVKYIE
CEDCGLCFAQNYKYKIHHDTVHKGLRPFECQECGKTFGRKDVLGRHIKKL
HTKDKTYNYKCQVCDECFSLESDLILHSTTIHANSEIAHEAEVNANSEIS
HEAEVMATLPTFTAFLNEDLSLSDKNC Run BLAST on NCBI transcript from alignment at scaffold_57:614578..617902 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070747 ID=TCONS_00070747|Name=TCONS_00070747|organism=Clytia hemisphaerica|type=transcript|length=3325bp|location=Sequence derived from alignment at scaffold_57:614578..617902 (Clytia hemisphaerica)
TAGTTCTAATTCATATTTAGGTAACTGTGGTATATTCTTAGAGACCATAA
cttctaaaatctttttgaatttcaattgtttttttaggttttgctaaact
gaagaaaaaaaataagtaaaaatgGTATGTTTATCATCAATGTATTGAAA
GATTGCAACTGATCAAGCTTTGAAGAATTGAATCAATATTTCTTCTAAAC
AACATAAAGTACActaaaatgaattttgaaattggaaaTGTGTCGATTAA
ACTTCCGGTGAAAGTTGGATCTGAGGAATCAACCGATCCTTTCAAATTAT
CTTTtaatatcaaatttaataacAAAGAAATTGGCTCATTTCAAATCAcc
ttggaaaattttgatacCAGTTTGGAACTCAGAGATTTGGGTAAAAATAG
TATATTATTTAAACCAAGCAATGAAACTTGTGAGAAAAAGGTTAATATTG
AGTCgaccgaaaaaaaattacaacaaaCTTATGACAATGAACAAGAGGAA
GATAGTCCTTTGGTTGAAgattatcaaaagaaaagtgaaagaGAGCTTCG
GAAACAATCTCCTAAGAATTATAGAGGAGATGCTGAAAATTATTTGGAAG
GAAAAGAAGATTACAAAAATGAGACCCCACAAACTGAAAAGAAAGcaggg
aaaataaaaaaattcgaatgtgATGATTGTGGGGTGCGGTTTGCATCAAA
CTCAAAGCTCAAAATTCATCATGATTCAGTTCATAAGAAATTGAAACCAT
TTGAATGCACTGAGTGTGGTAAAAATTTGGTAGGAAAGACTATCTTGTTT
CTCATCTTAAGATTCACACAAAAGGTAAACCAATTCAGAGTCAAGTTTGT
GGTGAAAGATTTTCACAGAAATCTGATTTGGTTTTCAATGACAAGAGCAC
TTACGAAGATTCTGTAACATCAAATGAAGATGACACTTCCCTTCCTACAT
TCACTGGTCTTAATGAAAANACATCAAATGAAGATGGTACTTCCCTTCCT
ACCTTCACTGCTCTTAATGAAAACGATGGACAATCTATGATTGTTAATGA
ATAACagcttttaaaagaaagtttgttTTAATATTCAGGGGATTCAAAAC
AATATTGAAGGAGACACTAGTATTATGAGAAACAGCTGTGAAGAATAAAC
TAAACACTTTCTTGACAAATTATGTCAATCATAATACTTGTATATCCTTC
AATATTGTTTTGAATCCCCTGAATATTAAaacaaactttcttttaaaagc
tGTTATTCATTAACAATCATAGATTGTCCATCGTTTTCATTAAGAGCAGT
GAAGGTAGGAAGGGAAGTACCATCTTCATTTGATGTTACAGAATCTTCGT
AAGTGCTCTTGTCATTGAAAACCAAATCAGATTTCTGTGAAAATCTTTCA
CCACAAACTTGACTCTGAATTGGTTTATCTTTTGTGTGAATCTTAAGATG
AGAAACAAGATAGTCTTTCCTGCCAAATTTTTTACCACATTCAGTGCATT
CAAATGGTTTCAATTTCTTATGAACTGAATCATGATGAATTTTGAGCTTT
GAGTTTGATGCAAACCGCACCCCACAATCATcacattcgaatttttttat
tttccctgCTTTCTTTTCAGTTTNGAttagttttgcttatttttacgAAT
TTGGGTGTATCCGAGAATTCAGTCTTTCtgtctttaaaatgtttttttac
tcATTCACATCTACTCTGTTCTTCTTTTAGAAATatgctaaaaattaaaa
aaattaaataacatTGAACAATTACAGGAAAGGAACCACAAATTGTGAAA
GAATTATTTATTAGCATCGATCAATTAATTTGTGATCAAAATTTGTCATC
AAGATTGCATAGCCATTTCTATACATGAAGACAATGAATTTCGAATTCGG
AAATGTATCGATTAAACTTCCAGTAAAAGCTGGGTCCAAAGAACCACCTA
ATCCATTTGAATTGGCTTTTGATCTTGAATTCAACGAAAAAAAGATCGGC
TCTTTTCAACTCACCCTTGAAGGTTTTGATGTTGGTTTTGAACTAAgaga
ttttagcaaaaatagttTATCATTTAAACCAAGCCATTACGAAACTGAGT
CGCAGTCATCAATGGATGAAGATCTCGAACAAGAAAGTGACAATGAACAA
GAGGAAAATAATTCCTTGATTGGGAGAGAGCTTCGAAAACGATCTCCAAA
GAATTATAATGAAGAAACTGAAGATTGCTTTGAAGGAAAACAAAATTCTA
ATCACCAGAACCGGCAAACAAGACGAATagtaaaagagataaaaaagtTT
CAATGTGATGGTTGTGGTGCCGAATATCGCTCAAGTACAAAACTTAGAAT
CCATCATGATACTGTTCATAAAGGGCTTCGGCCATTTgagtgtcaagaat
gtggtaaaaaaTTTGGCAGAAAAGACACTTTGGGAAATCATCTGAAACTT
CACGAAAAAGATAAACAATTGAATTTACAATTATGTTCACCTGCGATTCC
AGCAAACCAAATAGTTTGCGTGGTAGATAATATGCCACGGAAGCAGATGA
AAGAAAATGTACAGGAGCCAGATTCCaaacaaaatgaagaaagttttaag
aaagaaaaagtcaaatatATTGAATGCGAGGATTGTGGACTTTGTTTTGC
AcaaaattataaatataaaatacaTCATGATACAGTCCATAAAGGGCTTC
GACCATttgaatgtcaagaatgtggtaaaactTTTGGAAGAAAAGATGTC
CTTGGAAGGCATATAAAAAAACTACACACGAAAGATAAAACATATAACTA
TAAGTGTCAAGTATGTGATGAATGTTTTTCATTGGAAAGCGATTTAATCT
TACACAGCACAACCATTCATGCGAATTCGGAAATAGCTCATGAAGCCGAA
GTTAATGCGAATTCTGAAATATCTCATGAAGCTGAAGTTATGGCTACTCT
ACCTACTTTTACTGCCTTTCTTAATGAAGACCTATCATTATCGGATAAAA
ATTGTTGATAGATAGAGTCAAGTTTGTGGTAAGTGATTTCACTGAAGAGT
GATTTGAAGACAGATTCATGGAGAAGCAGAAGTTTTAGATGAATGCTACT
TATTTCCACCTTCAGTCTTATTGAAGACCAAATATTGAACGATTGCTGAT
TGTTTGGGACTTTTTAAAATGTTAATATATTGCTTGATATTCTaattaaa
atttacattacTTTACGCCATCGTGggatctttttttaaatggtaaGGCT
GCAATAAATCAGTTTTAATCCATTGTCAAAAGtgtattatatttgaaata
tatcGTTATTAGcatttttaactcg Coding sequence (CDS) from alignment at scaffold_57:614578..617902 >TCONS_00070747 ID=TCONS_00070747|Name=TCONS_00070747|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_57:614578..617902 (Clytia hemisphaerica)
ATGAAGACAATGAATTTCGAATTCGGAAATGTATCGATTAAACTTCCAGT
AAAAGCTGGGTCCAAAGAACCACCTAATCCATTTGAATTGGCTTTTGATC
TTGAATTCAACGAAAAAAAGATCGGCTCTTTTCAACTCACCCTTGAAGGT
TTTGATGTTGGTTTTGAACTAAgagattttagcaaaaatagttTATCATT
TAAACCAAGCCATTACGAAACTGAGTCGCAGTCATCAATGGATGAAGATC
TCGAACAAGAAAGTGACAATGAACAAGAGGAAAATAATTCCTTGATTGGG
AGAGAGCTTCGAAAACGATCTCCAAAGAATTATAATGAAGAAACTGAAGA
TTGCTTTGAAGGAAAACAAAATTCTAATCACCAGAACCGGCAAACAAGAC
GAATagtaaaagagataaaaaagtTTCAATGTGATGGTTGTGGTGCCGAA
TATCGCTCAAGTACAAAACTTAGAATCCATCATGATACTGTTCATAAAGG
GCTTCGGCCATTTgagtgtcaagaatgtggtaaaaaaTTTGGCAGAAAAG
ACACTTTGGGAAATCATCTGAAACTTCACGAAAAAGATAAACAATTGAAT
TTACAATTATGTTCACCTGCGATTCCAGCAAACCAAATAGTTTGCGTGGT
AGATAATATGCCACGGAAGCAGATGAAAGAAAATGTACAGGAGCCAGATT
CCaaacaaaatgaagaaagttttaagaaagaaaaagtcaaatatATTGAA
TGCGAGGATTGTGGACTTTGTTTTGCAcaaaattataaatataaaataca
TCATGATACAGTCCATAAAGGGCTTCGACCATttgaatgtcaagaatgtg
gtaaaactTTTGGAAGAAAAGATGTCCTTGGAAGGCATATAAAAAAACTA
CACACGAAAGATAAAACATATAACTATAAGTGTCAAGTATGTGATGAATG
TTTTTCATTGGAAAGCGATTTAATCTTACACAGCACAACCATTCATGCGA
ATTCGGAAATAGCTCATGAAGCCGAAGTTAATGCGAATTCTGAAATATCT
CATGAAGCTGAAGTTATGGCTACTCTACCTACTTTTACTGCCTTTCTTAA
TGAAGACCTATCATTATCGGATAAAAATTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070747-exon-scaffold_57-1491911889:614578..617902 | TCONS_00070747-exon-scaffold_57-1491911889:614578..617902 | Clytia hemisphaerica | exon |
| TCONS_00070747-exon-scaffold_57-1510915933:614578..617902 | TCONS_00070747-exon-scaffold_57-1510915933:614578..617902 | Clytia hemisphaerica | exon |
| TCONS_00070747-exon-scaffold_57-1575043694:614578..617902 | TCONS_00070747-exon-scaffold_57-1575043694:614578..617902 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_57 | supercontig | scaffold_57:614578..617902 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00070747 vs. Swiss-Prot (Human)
Match: ZN383 (Zinc finger protein 383 OS=Homo sapiens GN=ZNF383 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.170e-22 Identity = 69/204 (33.82%), Postives = 98/204 (48.04%), Query Frame = -3
Query: 450 QTRRIVKEIKKFQCDGCGAEYRSSTKLRIHHDTVHKGLRPFECQECGKKFGRKDTLGNHLKLHEKDKQLNLQLCSPAIPANQIVCVVDNMPRKQMKENVQEPDSKQNEESFKKEKVKYIECEDCGLCFAQNYKYKIHHDTVHKGLRPFECQECGKTFGRKDVLGRHIKKLHTKDKTYNYKCQVCDECFSLESDLILHSTTIHAN 1061
Q RI K ++C CG + S+KL + H +H G +P+EC+ECGK F L NH ++H +K + + C A Q +Q++ EK EC +CG F QN + H +H +P+EC ECGK F + L RH+ ++HT +K YN C+ C + FS SDLI H IH N
Sbjct: 299 QHARIHTGEKPYECKECGKAFTQSSKL-VQHQRIHTGEKPYECKECGKAFSSGSALTNHQRIHTGEKPYDCKECGKAF--------------------TQSSQLRQHQRIHAGEKP--FECLECGKAFTQNSQL-FQHQRIHTDEKPYECNECGKAFNKCSNLTRHL-RIHTGEKPYN--CKECGKAFSSGSDLIRHQ-GIHTN 474 HSP 2 Score: 87.8113 bits (216), Expect = 9.099e-18 Identity = 59/195 (30.26%), Postives = 92/195 (47.18%), Query Frame = -3
Query: 450 KKFQCDGCGAEYRSSTKLRIHHDTVHKGLRPFECQECGKKFGRKDTLGNHLKLHEKDKQLNLQLCSPAIPANQIVCVVDNMPRKQMKENVQEPDSKQNEESFKKEKVKYIECEDCGLCFAQNYKYKIHHDTVHKGLRPFECQECGKTFGRKDVLGRHIKKLHTKDKTYNYKCQVCDECFSLESDLILHSTTIHAN 1034
K F+C CG + S+ L H +H G +P+EC+ECGK F L +H ++H +K ++C A + + Q E+ + EC++CG F Q+ K + H +H G +P+EC+ECGK F L H +++HT +K Y+ C+ C + F+ S L H IHA
Sbjct: 224 KPFECKECGKAFSCSSYLS-QHQRIHTGKKPYECKECGKAFSYCSNLIDHQRIHTGEKPYECKVCGKAFTKSSQL--------------FQHARIHTGEKPY--------ECKECGKAFTQSSKL-VQHQRIHTGEKPYECKECGKAFSSGSALTNH-QRIHTGEKPYD--CKECGKAFTQSSQLRQHQ-RIHAG 390
The following BLAST results are available for this feature:
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