|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070785 ID=TCONS_00070785|Name=TCONS_00070785|organism=Clytia hemisphaerica|type=transcript|length=1666bp agtgtcgcgaactgaaagatagtgtcgcgaactgaaagatagtgtcgcga actgaaagatagtgtcgcgaactgaaagatagtgccgcgaaatgaaagat agtgccgcggaatgaaagatagtgccacgaaatgaaagatagtgccgcga aatgaaagatagtgtcgcgaaatgaaagatagtatttatttccgctttgg cgcgccatagtcTTGGCCCAATTTTGGCTGTCGTTAGGTGACATGTACTA ACCAGAAAATAATTGCTTATGAAAAAAGAGTTATTTTAAGTGGAAAAAGT ATGTTTTGTGTCATTGTATAGTCTCAGTAATGTTTAAAAGATTGATAAGT TGGCTTAGAAGCCACGGAACTTCCACCAGTGAAGAATCTGAACTTgacca aaagaaaaactttatcaaaaacaaaatacaagaaattggCGTGACCTGGA AGGATattgaaaatgtatttttctgGAATTCACCCTGGCTATCATTTACA ATTTATGGGGGTTTTCTTTGCATCTTTTGGAAATTCATTTCGTATGAATT GCAAAGAATTGGTTTGTTGATATTATTGTTTACTGGGCTGATCATATTCC AAGAGTTGAGAAAGCTTATTTATTCCTATCTTGAGGAGAGGtccttcatc aaaatcatcccAGAGAATAAAAGCCTTGGTTTCAGCTTGGAAGATGTGGT TTGTGTTGCAGCAGAAACATGGCTTACAACTGAAGCACACTTTATGTACT TGATGCAACTTAAGGAGCGAAAAGATATTACATTATGTTTTTATCTTGCT GTTTACTTGGGTGCTTTTGGTATTATTATTGGATACATTCCTGTATCTGA AATCTTATTTTTGTTAGGTACATTTCTTTATTTCTACCCGGTCTGCAGTT ACCTTGGTATTATTGAGAAATTATTTGAGCGCTTGGAGAGAATCATTCAA CCCATTGCACTCCAATGGTGCAACACAGAGACAAAACGAACTAGaaataa aaagtttgataaTGttgTACCGCAACGCAAGAGCACAGCTGATGCTGAGG AAGACGAATTTTTACCACGTGATCACTCTCAACCAACAGAAACGCGCCAA GAGATCATGGAAACTACAGACGATTCAATGGATGAGTTTGATTTGAGAGG AAAACTACATTTAAAAGGTTTTTCCAACAGCTTACACTTTTCACGTTGAT GTCCTTTTATCCATATAGAGGTTTTTTAAAGTAGGTCGTTAAAGATATAA TTGTATCCGCGGTGGGAAGACCAAGCTTCTACCAAGGATTCAgagttttt catcgattttttagCCATAATGTAGTTCCTGACCGCTTGAATTGAATTAA GCCGAGTAAAGGATCCAACTTCAACTTTTAATTGGGATTAGAACAATGTC AACTCAATATCTCCCACCTGGTCAGCTTGTTTTGAATTTCGAGATTGGTA TTTTTTACCAATCGCGTCAATAAATTGGGGTATTGGTTTCGAAAAGTGTA TGAGACGTCACCCAGCTGAACGACTGTAGATTGCCCATCGATATTGATCA CAAGTTAATCTATTGATTGCGTTTACTAACAAGCTAgatattcaattgac attgattAGAAAGGTACTGGGTAACATGAACACGTCACGCCCTTTATGAT CGAAAGTTCCGCCCCt Run BLAST on NCBI transcript from alignment at scaffold_58:427452..435446+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070785 ID=TCONS_00070785|Name=TCONS_00070785|organism=Clytia hemisphaerica|type=transcript|length=7995bp|location=Sequence derived from alignment at scaffold_58:427452..435446+ (Clytia hemisphaerica) agtgtcgcgaactgaaagatagtgtcgcgaactgaaagatagtgtcgcga
actgaaagatagtgtcgcgaactgaaagatagtgccgcgaaatgaaagat
agtgccgcggaatgaaagatagtgccacgaaatgaaagatagtgccgcga
aatgaaagatagtgtcgcgaaatgaaagatagtatttatttccgctttgg
cgcgccatagtcTTGGCCCAATTTTGGCTGTCGTTAGGTGACATGTACTA
ACCAGAAAATAATTGCTTATGAAAAAAGAGTTATTTTAAGTGGAAAAAGT
ATGTTTTGTGTCATTGTATAGTCTCAGTAATGTTTAAAAGATTGATAAGT
TGGCTTAGAAGCCACGGAACTTCCACCAGTGAAGAATCTGAACTTgacca
aaagaaaaactttatcaaaaacaaaatacaagaaattggCGTGACCTGGA
AGGATattgaaaatgtatttttctgGAATTCACCCTGGCTATCATTTACA
ATTTATGGGGGTTTTCTTTGCATCTTTTGGTGAGTatcacttttgtttta
taaCTACTaacgtgaagtcgggtaacttgcatcagtggagggaaacttgc
atagccatcaaatgactgaccaatcaaagcagcaaaatttcaaaacaaat
gaactatgcagctccgctcgcagctctactataccatttttgttttgatt
taacttcgTCATTCATTTGGTGGCTATGcggcatgttagcctccactgta
CTACTGCACTGATGCAAGTTTACCTGACTTCATGGTACATAACTGGAATG
AAACAAAACAGAGAAAACAGATTTGCAAGGACAACAGAGACTGACAGAGT
GAGGGTGGGACAAAGACGTCCCCTACATAATACCACACCCCAGTCTGGAA
AGGAGGGAAATGTTACGCTGCGCTGCTGCTGGAGCTGCACCAACTTAACT
GGGAAAAGTTGAAGGCGGGGCAGCAGATCTCAAACCTCAAATCTACGCCG
GAGATATCCAGCGCACAAGCCACAATTTCCAGACTGGTACCACACCCTCC
TGTCCTTTTTATTTATCTATATGTATGTCAGTTTGTACCGCAATTCACCC
TATCGGAAAGTTCACATCTTCAAAATGTTACTGGGCATAACATTGGGAGA
GGTAAAGTTAAGGACACAATTATTCGATtttggcagttacatcaaaatgc
ctcgaaaatgtcaatatgaaaattgcgtaatcagagaacgtatgtctcgc
tcattataaaaaggccgagacaaactttcaNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcca
gggggtaaataaaacagaccttgatacatttatcgttcgtttcaacttga
ccatttgtttaaaactcagcctcctaaatatttggggtgggtaaaatatg
tacaaagaaattcatacttttccaacccggccaatcttaaaaaaaaaagc
gaacaataaaatgtaattaccctttccaaataaacctcttcggtggcgag
cgtagtctactctgacgtaattgtaaaatttatgtaatgggagtttgaca
tagtaatgtaatgttgtttggggaattataaagttctctgggatttcgat
tgcatttattcaggttgattttttatgacttttaatggtactttttctaa
cgagtttgattactctgttctcacacttatgtctttttttttttcgcgtc
cttttccgtgattacttttatttatatttttaaagaaaggtaagaaggca
tattgatgtaactgtttggCGGGGGGGGGTCACAATGGGGTCAGGTCAGT
ACCAGACGATGTCAACTGTTTACTGTTTAAACAGTGATCAAACTGAGAAA
TTCCGGTAAAGTTTGATtcgtttgatttatatattcaATGTGTTCAAAAC
CTTTATTTGGCCAATCGTTATGCTTCTACAAGTATGGGACCCAGTTGGAA
ATCAGTCGTTaacataccgtaagttggtctaatatcgacatccctcgtct
aattccgacacccttctttagtgacaggaataatatgaaagcttgaatca
ctgattgaaaaagaattattcctctctgaccactaagcaaagaacaACAG
TTTCAGCTTTTCTATCAATTTTAGCTCATaaaaagggtgtcaaaattaga
ggagggatgtcgacattagaacAAGCTACGGTATATACCAACTAGAATGT
GTCAAGAGAAAATCTTAAGTCGTAAACGAACATTGGAAAAGAGACGACAA
ATCAACCGGTTATCAACACTGTACCAATTCCGCCACGGTCTTAAGAATAG
ACTTATTACTATATATACATACATTTGATACtattttttaagcataaatt
cattttaaaatctttgctgGTCACAACTACCTCATAATTCTTTAAATATA
AACTATTTTTGTGTTAGGAAATTTTAATCTCGATGAtaagtttgataaaa
tttgacttGTCACCATCAGAAAGAAGAAAGGGTAACTTAAATTTCAAGTT
AGGcgacaatcacaaatatcttcattttgcgtccttgttgggtctaaaaa
ttgagtcaGTTGatcggtcgtaaaaattttcggatTTTCTTAcctccatc
atccatttttggagtgtatttttgaagaaagaaaattgccagccagccag
caggcAAAACGACCGCGTGTTatgggtggtttcaaattatgacctttgaa
cactgtgatcTTCaacccaaaatggcgcatgtaatgataaacaaagtcaa
aatgccgcGAATGCACTAGAAATCGCttgcaaaaaatcagcaataataaa
atttttgaaagaaggaAACGTCATCGACAAAAAAAGTGCGACAAATTTAC
TGACTCActgactcaattctactcaattttggAGAGTCGGTCGGGCAACG
CAAAtggaagatatttgtgattgccgcctcatcACTTTAAAATTtgctaa
agaaaaattaaataaaaaaaattcgaagGAATTCTCTTTTGAATAGGCGt
catttttgtagaaaaatgtGCCACAGTCAGTTTTTTTGAAACACCTGGTA
TAGGTGTGAAGTAAAccacatttttttttgaaaaaaggaaagactgatgt
aaaaattttcaactgAAAATTTGCACATAAAAAGTGTATTTCATTCCCCC
TTACTCTTTTAGAGtatataatttgaattttaattattcaaattctaatt
ttagattttaaattttaattaatttaaattttacaGTATGATAATCCACT
AGACTGATCTTTCCAACCAGGTATGGTTCATTATAGTGTGATTATTAAAA
GATTgagaaatcaaagtcaataaaaaatttactttcattCTATAAAAACC
TCTACAGGATCCTGAATctttatgaaaagttttttgGTTATACCATTGCC
CTGAGCTATTGGTCAAAAAGTAGGACAATAAAAAATTATACTCAAACTAT
AATACTTACTCTTATTAAACGTTCATTGGTATTTTGATTCGAATTTGAAT
GTCAATCTCATAATAGATCATTCATCCTGCACATACCAtgctctgctcta
aagggatgtggcAAAGTGATGTTTTGGCCTGGTTGTTCAGCCATAACAAT
CGAAACCGCAttgttttttgcttgaaaacgaaagtgaaagtgaccAGTGA
CTGGGtctaatgtttatgtttatgtttatgtttatgtttggCTTTTGATT
TTGGTGCGATTATTATGCTTTTAGCCAATCACCATACCTAAAAGCCCATT
TGATATTTATctcaaatctggatgaaaaagatcaaagcagTGCACCAACC
TGGACAGATTCTCTTATGGACATGGATTAcccaggccatttttcatgccc
ttttagcgtccgatgcccctcctaaaatcactaaaattttggtaaaagca
gcctttttagcagaaaaacacaagaaaaagtgcccttttcgGCCACCAAC
AgacgctgccctgcctttctaaaatatggcctgttACCTTTAGAGTAAAT
ATGTGCCAAGCGTagagtatcagaatctgctcagagattactttcaaact
tttcaataaaaaggctAGAGAATAACGGGATAGGGGTTGATTTGAATAAG
GGTCAGGTGCCTCTGCTCTGATTTGTCTCCAAGTTTATCTCCAACCTTTT
TTCCCAGAATTTTTTTCGagtattttttaccttttttgaccATTATTTTA
GTGGTAACCCTCTTGTTATGCTATGGTACAGCTGGTTATCGTGTGACTTT
TATTCTTATATTTATAATTTCAGGAAATTCATTTCGTATGAATTGCAAAG
AATTGGTTTGTTGATATTATTGTTTACTGGGCTGATCATATTCCAAGAGT
TGAGAAAGCTTATTTATTCCTATCTTGAGGAGAGTAAGTAAAATTATAAT
CTTATTTCAAATGTATTCATGGCAAATCAGGACCTTAAAGCTAACTCTGT
AACCTTGGGACTGAGGCCGATAAGAATAAGTGTTATACAGTATTGTAGGT
ATATATGATTATAAGCAATAACTGATACATCTGTATAAAGAATTGGAAAC
ACCTGGTGTGCAGAGCTCCAGCCCTACTTGCAGAAGTCTGCTTGTTGAGT
TTTAAGTAATTTTCCTACTCACAATGGTAATGCCATTCAGTTTTCTATTT
AATTTAGTCGTCTATATTGCTAAACTTTCCAACGTTGGAAATTTTCTGAG
AGAAACCTTGAAAATTACTTAAAAACCTTGTGATCTTGGCAACATTCTTT
TGTCTTGTTATGGCTCAACAGCCATTACAGCATTTGGTATTGTGTTTTAT
ATAGATGTGATAAAAAGAAATGGCATTTTACAATTGCGAGTTTTTACAAT
AGTATTTTCAGACAACTTTTCTAATTTGATATAGTGAATATATAATGAAA
TAATACAGATGCTAAGAAGGAGTTGCCCTGTTTTTGACCTTTTCAAATTG
CAATAAAACATGATTATGTGAATTATTCTGTGCTTATTATTGGAATTGAA
TTTAAACTCTTACTAAATGTTTATTATGTTTTTCAACAAGAGGAACTAAT
AAAGTTAAAGCTtgaatttaattattttattaaattatggAACTATGCAT
TCTTTTGTGCGAATTCTAACggctttaatttcattttttttacttcGTTC
AAAGGGtccttcatcaaaatcatcccAGAGAATAAAAGGTATAAACTTCT
TTATGAGTTTCAGGTATACACTTTTCCAGTTGTCTTCGGTTATTTCCAAG
ATAAATGATCGAAAAGGCTTTCTCTGCAAAAAGTAATATATATTACTGCT
TCTTTTACtaagaaaacaagaaaacatacccatattataaagttttttca
gGAAATGTCTCATTTATTGGAATGTTTGGACCTCTCGTTTGTCTGCTACC
AGTTTTCCTCCAGATTGGCTTATTAGGTTTTAGTGATTTTTGCGCAAAGT
TGCGAATACCCAAATTGTGACGAAGTCCgattttcattagtttttttagt
aaacTAATGATTTTTGACAGTCTCTATATCAGGAAGTCTGATTAAAATCC
AGCTTGTTAGACTTGAAAACTCCCTCCCGAGTCTTCAGCAAATTCTTCAA
ATTTAATTCAACTTGCTgctctttttcaatttcatccaTGTACAGCAAGT
TTCTTTTTCTTGCAAGAAATTTTtatgagcctggatgtgcttttttgata
aaaaaacgcTTAACGGAAACCTTTCCTTTCGAAAGTCATAAAGATGTAAA
ATTGCAAAGCAAAATTTGTCGGTACGGTAGTATAATAttgttgattttta
attttgttccTCACCAGCCTTGGTTTCAGCTTGGAAGATGTGGTTTGTGT
TGCAGCAGAAACATGGCTTACAACTGAAGCACACTTTATGTACTTGATGC
AACTTAAGGAGCGAAAAGATATTACAGTATGTTTATTATTTAAAAGCTAT
TAAACCAGCTGTCAATAACGACTGTGAGATAAGGCGTGATGTTGTGGGTC
AAGAAACTtgagatgaaattttgtttactgaaactaaaaaacatcaaaat
ctttCGGTCAATTTTTAAACAGATCTTTCTCCTTCCATTTCAGTTATGTT
TTTATCTTGCTGTTTACTTGGGTGCTTTTGGTATTATTATTGGATACATT
CCTGTATCTGAAATCTTATTTTTGTTAGGTAAGTTAAAACTATTAATATT
AATAGTCAGCCATACTAACTTTACTAACTATACTTTACTAAGTAGCATTC
TTCTGAGATTAAAACATTTAAAGAAGTCACACCATGAATCTGTTGGTTGA
GAATTCGAAACGAGTTTTACCAAAATTTGTTGTCTTGGCCATctctaaac
aaatatttcaaTGAAATAATTACCTAGTTCATCAGATGGCAACAAATACA
AATTGACATCATCGTTATCGTTTTCAATAATGTTAATGCCGATGGTAGAC
CCCCATTTTCTTCCTCTATATATTTCACTGACTCATAAATTTACTTAGTC
AGGACTTGGCACACCTTGAGATTttaatcatcatcatcaccatcatcGTT
TGACTTacggccggtctccacttgcacgcgctgcgatcgcaccaatgggc
caatggaattgcttcatttttcttttgaccaatagcgtggtaGCTTTGCT
CGAGAAAATGctatcgcagcgcgcgcaaccACTTGCGCGACGCGAGACTG
GCCTTTACGTTGGAAAATTTGAACAGCCTTCCCTCCACAAACCTCAATCT
TGCATAACCGAGGTTTTAATGTGGAGCACGTCTTCTGTTATCTGGAAAAA
TAAGCAAATCCAATCGGGTTCTGAGTTCGGAGTAGATGGGTTTGTTTTCA
TTATATAAAACCTAGTACTCATAAGTATACGAGAATGTATTCTCTCTATT
TTGTAGGTACATTTCTTTATTTCTACCCGGTCTGCAGTTACCTTGGTATT
ATTGAGAAATTATTTGAGCGCTTGGAGAGAATCATTCAACCCATTGCACT
CCAATGGTGCAACACAGAGACAAAACGAACTAGaaataaaaagtttgata
aTGGTGAGTAATCTTCTACTAATTTTGATCTTTTGATCTTTTAAGTCCAT
TCCAGTCGTTTTACTTCGTTTCCCAAATACGAGAATATGGGTCTAAAGAT
TTCTTTGTGAATTTGTGAATTTTttacttctttcatttttcagttgTACC
GCAACGCAAGAGCACAGCTGATGCTGAGGAAGACGAATTTTTACCACGTG
ATCACTCTCAACCAACAGAAACGCGCCAAGAGATCATGGAAACTACAGAC
GATTCAATGGATGAGTTTGATTTGAGAGGAAAACTACATTTAAAAGGTTT
TTCCAACAGCTTACACTTTTCACGTTGATGTCCTTTTATCCATATAGAGG
TTTTTTAAAGTAGGTCGTTAAAGATATAATTGTATCCGCGGTGGGAAGAC
CAAGCTTCTACCAAGGATTCAgagtttttcatcgattttttagCCATAAT
GTAGTTCCTGACCGCTTGAATTGAATTAAGCCGAGTAAAGGATCCAACTT
CAACTTTTAATTGGGATTAGAACAATGTCAACTCAATATCTCCCACCTGG
TCAGCTTGTTTTGAATTTCGAGATTGGTATTTTTTACCAATCGCGTCAAT
AAATTGGGGTATTGGTTTCGAAAAGTGTATGAGACGTCACCCAGCTGAAC
GACTGTAGATTGCCCATCGATATTGATCACAAGTTAATCTATTGATTGCG
TTTACTAACAAGCTAgatattcaattgacattgattAGAAAGGTACTGGG
TAACATGAACACGTCACGCCCTTTATGATCGAAAGTTCCGCCCCt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00070785-exon-scaffold_58-1491911889:427452..427980 | TCONS_00070785-exon-scaffold_58-1491911889:427452..427980 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1510915933:427452..427980 | TCONS_00070785-exon-scaffold_58-1510915933:427452..427980 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1575043694:427452..427980 | TCONS_00070785-exon-scaffold_58-1575043694:427452..427980 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1491911889:431875..431984 | TCONS_00070785-exon-scaffold_58-1491911889:431875..431984 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1510915933:431875..431984 | TCONS_00070785-exon-scaffold_58-1510915933:431875..431984 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1575043694:431875..431984 | TCONS_00070785-exon-scaffold_58-1575043694:431875..431984 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1491911889:432756..432789 | TCONS_00070785-exon-scaffold_58-1491911889:432756..432789 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1510915933:432756..432789 | TCONS_00070785-exon-scaffold_58-1510915933:432756..432789 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1575043694:432756..432789 | TCONS_00070785-exon-scaffold_58-1575043694:432756..432789 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1491911889:433419..433527 | TCONS_00070785-exon-scaffold_58-1491911889:433419..433527 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1510915933:433419..433527 | TCONS_00070785-exon-scaffold_58-1510915933:433419..433527 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1575043694:433419..433527 | TCONS_00070785-exon-scaffold_58-1575043694:433419..433527 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1491911889:433695..433779 | TCONS_00070785-exon-scaffold_58-1491911889:433695..433779 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1510915933:433695..433779 | TCONS_00070785-exon-scaffold_58-1510915933:433695..433779 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1575043694:433695..433779 | TCONS_00070785-exon-scaffold_58-1575043694:433695..433779 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1491911889:434508..434654 | TCONS_00070785-exon-scaffold_58-1491911889:434508..434654 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1510915933:434508..434654 | TCONS_00070785-exon-scaffold_58-1510915933:434508..434654 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1575043694:434508..434654 | TCONS_00070785-exon-scaffold_58-1575043694:434508..434654 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1491911889:434795..435446 | TCONS_00070785-exon-scaffold_58-1491911889:434795..435446 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1510915933:434795..435446 | TCONS_00070785-exon-scaffold_58-1510915933:434795..435446 | Clytia hemisphaerica | exon |
TCONS_00070785-exon-scaffold_58-1575043694:434795..435446 | TCONS_00070785-exon-scaffold_58-1575043694:434795..435446 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_58 | supercontig | scaffold_58:427452..435446 + |
Blast
The following BLAST results are available for this feature:
|