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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070786 ID=TCONS_00070786|Name=TCONS_00070786|organism=Clytia hemisphaerica|type=transcript|length=4124bpRun BLAST on NCBI transcript from alignment at scaffold_58:445039..460510+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070786 ID=TCONS_00070786|Name=TCONS_00070786|organism=Clytia hemisphaerica|type=transcript|length=15472bp|location=Sequence derived from alignment at scaffold_58:445039..460510+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070786 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 262.692 bits (670), Expect = 1.351e-70 Identity = 129/290 (44.48%), Postives = 168/290 (57.93%), Query Frame = 2
Query: 566 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTPCSKSCGGGTTTRSRKCDNPAPANGGWNCEGSGTETQKCNTNECPKQAVNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPC 1435
+G W EW+ C++SCG G TR+R C+NP+ HGG+ CEG+ E CN CP V+G W W CS+SCG GT TR+R C+NP PA GG C+G+ T+ Q CN CP ++G W W + CS SCGGG R+R C +P P +GG+ CEGSD ++ CN+ C G + WSG+G CS TC G R R CD P PS GG+ C G +Q + C+T + CPVDG W W W C CGGG + R R CD+P P G+ C G+ +CN+ C
Sbjct: 4586 DGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP---VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCP---IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 2 Score: 259.225 bits (661), Expect = 1.538e-69 Identity = 127/290 (43.79%), Postives = 172/290 (59.31%), Query Frame = 2
Query: 566 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTPCSKSCGGGTTTRSRKCDNPAPANGGWNCEGSGTETQKCNTNECPKQAVNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPC 1435
+GG+ +W+ CS +CG G RSR C+ P PA+GGK C+GSD E R C CP V+G W EW+ C++SCG G TR+R C+NP+ +GG CEG+ E CN CP V+G W W CS+SCG G TR+R C+NP PA GG C+G++T+ + CN + C + G + W+ + CSV+CG G + R R C P P GG+ C+G Q++ C++ CP G W+ WS W +C + C GG RRYRTCDNPPP G+ C G ++CN D C
Sbjct: 4529 HGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP---VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP---VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 3 Score: 216.083 bits (549), Expect = 3.474e-56 Identity = 104/231 (45.02%), Postives = 141/231 (61.04%), Query Frame = 2
Query: 743 VNGGWGEWTKPTPCSKSCGGGTTTRSRKCDNPAPANGGWNCEGSGTETQKCNTNECPKQAVNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPC 1435
V+GG+ +W+ CS +CG G RSR C+ P PANGG C+GS E + C CP V+G W EW+ C++SCG G TR+R C+NP+ HGG+ CEG+ E CN + C V G + W +G CS +CG GT+TR R C+ P P+ GG C G TQ + C+ + NCP+ GKWA W+ W +C CGGG+++R R C +P P G+KC+G + S CN DPC
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP---VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNER-NCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 4 Score: 210.69 bits (535), Expect = 1.636e-54 Identity = 103/234 (44.02%), Postives = 140/234 (59.83%), Query Frame = 2
Query: 566 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTPCSKSCGGGTTTRSRKCDNPAPANGGWNCEGSGTETQKCNTNECPKQAVNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCP 1267
+G W W CS+SCG G TR+R C+NP PA GG C+G++T+ + CN CP ++G W W + CS SCGGG R+R C +P P GG CEGS ++ CN++ CP +G W W+ CS++C GG+ R R CDNP P++GG+ C G D++ + CN C VDG +G W + +CS +CG G KTR+R CD P P GG+ C G+TTQ C+ Q CP
Sbjct: 4643 HGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCP---IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPT---HGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQA-CP 4869 HSP 5 Score: 125.561 bits (314), Expect = 1.372e-28 Identity = 64/156 (41.03%), Postives = 84/156 (53.85%), Query Frame = 2
Query: 1040 DCEGSDTETRECNAKQCA------------VDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPCRDQDCFFKYTPF 1471
D + DT EC A+ V GGF +WS + CSVTCG G + R R C+QP P+ GGK CQG + NC + CPVDG W+EWS WE C + CG G+Q R RTC+NP G+ C+G ++ CNI PC + + P+
Sbjct: 4498 DAQKEDTSEFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNK-PCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPW 4652 HSP 6 Score: 119.013 bits (297), Expect = 1.512e-26 Identity = 55/124 (44.35%), Postives = 72/124 (58.06%), Query Frame = 2
Query: 2000 CNTKECQVVGNGNWGEWTYWSDCSATCGNGVHKRTRKCDNPPAVGGGKDCQGEAVETKPCNTGQKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 2371
CN + C + +G W W WS CS +CG G +RTR C +P GG+ C+G V++ CN+ CP G W+ WS W +C + C GG RRYRTCDNPPP G+ C G ++CNT CP
Sbjct: 4692 CNERNCPI--HGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNS-DPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812 HSP 7 Score: 115.546 bits (288), Expect = 1.422e-25 Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = 2
Query: 2030 NGNWGEWTYWSDCSATCGNGVHKRTRKCDNPPAVGGGKDCQGEAVETKPCNTGQKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 2371
+G + +W+ W CS TCG G+ KR+R C+ P GGK CQG +E + C + CPVDG W+EWS WE C + CG G+Q R RTC+NP G+ C+G ++ CN CP
Sbjct: 4529 HGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQ-NKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP 4641 HSP 8 Score: 114.005 bits (284), Expect = 4.250e-25 Identity = 55/124 (44.35%), Postives = 69/124 (55.65%), Query Frame = 2
Query: 2936 CNTEECQVVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 3307
CN C + +G W W WS CSV+C G +RTR C +P G CEG V++ CN+ CP G W+ WS W +C + C GG RRYRTCDNPPP G+ C G ++CNT CP
Sbjct: 4692 CNERNCPI--HGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812 HSP 9 Score: 113.62 bits (283), Expect = 6.054e-25 Identity = 52/124 (41.94%), Postives = 70/124 (56.45%), Query Frame = 2
Query: 2000 CNTKECQVVGNGNWGEWTYWSDCSATCGNGVHKRTRKCDNPPAVGGGKDCQGEAVETKPCNTGQKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 2371
CN + C V +G W W W CS +CG G R R C+NPP GG C G + + CN + CP+ GKWA W+ W +C CGGG+++R R C +P P G+KC+G + S CN+ CP
Sbjct: 4635 CNIRPCPV--HGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNE-RNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP 4755 HSP 10 Score: 112.079 bits (279), Expect = 1.888e-24 Identity = 53/124 (42.74%), Postives = 66/124 (53.23%), Query Frame = 2
Query: 2000 CNTKECQVVGNGNWGEWTYWSDCSATCGNGVHKRTRKCDNPPAVGGGKDCQGEAVETKPCNTGQKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 2371
CN+ C +GNW W+ W CS TC G +R R CDNPP GG+ C G + + CNT CPVDG W W W C CGGG + R R CD+P P G+ C G+ +CN +CP
Sbjct: 4749 CNSDPCPT--HGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNT-DMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 11 Score: 109.383 bits (272), Expect = 1.378e-23 Identity = 51/124 (41.13%), Postives = 69/124 (55.65%), Query Frame = 2
Query: 2936 CNTEECQVVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 3307
CN C V +G W W W CS +C G R R C+NPP G+ C+G + + CN R CP+ GKWA W+ W +C CGGG+++R R C +P P G+KC+G + S CN+ CP
Sbjct: 4635 CNIRPCPV--HGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNE-RNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP 4755 HSP 12 Score: 108.997 bits (271), Expect = 1.804e-23 Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = 2
Query: 2957 VVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 3307
V +G + +W+ W CSVTC G+ KR+R C+ P G C+G +E + C + CPVDG W+EWS WE C + CG G+Q R RTC+NP G+ C+G ++ CN CP
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQ-NKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP 4641 HSP 13 Score: 107.842 bits (268), Expect = 3.660e-23 Identity = 52/124 (41.94%), Postives = 66/124 (53.23%), Query Frame = 2
Query: 2936 CNTEECQVVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 3307
CN++ C ++GNW W+ W CS TC G +R R CDNPP G C G + + CNT CPVDG W W W C CGGG + R R CD+P P G+ C G+ +CN +CP
Sbjct: 4749 CNSDPCP--THGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00070786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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