Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070801 ID=TCONS_00070801|Name=TCONS_00070801|organism=Clytia hemisphaerica|type=transcript|length=1899bpRun BLAST on NCBI transcript from alignment at scaffold_58:454658..460510+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070801 ID=TCONS_00070801|Name=TCONS_00070801|organism=Clytia hemisphaerica|type=transcript|length=5853bp|location=Sequence derived from alignment at scaffold_58:454658..460510+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00070801 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 5.125e-29 Identity = 55/124 (44.35%), Postives = 72/124 (58.06%), Query Frame = 3 Query: 711 CNTKECQVVGNGNWGEWTYWSDCSATCGNGVHKRTRKCDNPPAVGGGKDCQGEAVETKPCNTGQKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1082 CN + C + +G W W WS CS +CG G +RTR C +P GG+ C+G V++ CN+ CP G W+ WS W +C + C GG RRYRTCDNPPP G+ C G ++CNT CP Sbjct: 4692 CNERNCPI--HGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNS-DPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812 HSP 2 Score: 118.627 bits (296), Expect = 2.845e-27 Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = 3 Query: 741 NGNWGEWTYWSDCSATCGNGVHKRTRKCDNPPAVGGGKDCQGEAVETKPCNTGQKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1082 +G + +W+ W CS TCG G+ KR+R C+ P GGK CQG +E + C + CPVDG W+EWS WE C + CG G+Q R RTC+NP G+ C+G ++ CN CP Sbjct: 4529 HGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQN-KPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP 4641 HSP 3 Score: 118.242 bits (295), Expect = 3.802e-27 Identity = 52/124 (41.94%), Postives = 70/124 (56.45%), Query Frame = 3 Query: 711 CNTKECQVVGNGNWGEWTYWSDCSATCGNGVHKRTRKCDNPPAVGGGKDCQGEAVETKPCNTGQKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1082 CN + C V +G W W W CS +CG G R R C+NPP GG C G + + CN + CP+ GKWA W+ W +C CGGG+++R R C +P P G+KC+G + S CN+ CP Sbjct: 4635 CNIRPCPV--HGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNE-RNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP 4755 HSP 4 Score: 117.472 bits (293), Expect = 6.608e-27 Identity = 53/124 (42.74%), Postives = 66/124 (53.23%), Query Frame = 3 Query: 711 CNTKECQVVGNGNWGEWTYWSDCSATCGNGVHKRTRKCDNPPAVGGGKDCQGEAVETKPCNTGQKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1082 CN+ C +GNW W+ W CS TC G +R R CDNPP GG+ C G + + CNT CPVDG W W W C CGGG + R R CD+P P G+ C G+ +CN +CP Sbjct: 4749 CNSDPCPT--HGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNT-DMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00070801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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