|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070805 ID=TCONS_00070805|Name=TCONS_00070805|organism=Clytia hemisphaerica|type=transcript|length=1848bpRun BLAST on NCBI transcript from alignment at scaffold_58:468936..475617+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070805 ID=TCONS_00070805|Name=TCONS_00070805|organism=Clytia hemisphaerica|type=transcript|length=6682bp|location=Sequence derived from alignment at scaffold_58:468936..475617+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070805 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 141.739 bits (356), Expect = 8.413e-35 Identity = 79/173 (45.66%), Postives = 112/173 (64.74%), Query Frame = 2
Query: 599 KVDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGKYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAACEGPAEDERACNTNGCPVNGKWXXXXXXXXXXXXXXXXXXXXXXXCNNPAPKNGGSQCSGSATQSATCNTQAC 1117
+V GG S+WS + CS +CG+G + R R C PLP NGG C+ G E + C+ K CPV+G + WS + +C++SCG GNQ +TR C++P+ HGG CEG A + CN CPV+G W ++ +G+CS++CG G+++R+R CNNP P GGS C G+ TQ CN + C
Sbjct: 4527 QVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQ--GSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697 HSP 2 Score: 136.346 bits (342), Expect = 4.037e-33 Identity = 78/175 (44.57%), Postives = 110/175 (62.86%), Query Frame = 2
Query: 593 PPKVDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGKYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAACEGPAEDERACNTNGCPVNGKWXXXXXXXXXXXXXXXXXXXXXXXCNNPAPKNGGSQCSGSATQSATCNTQAC 1117
P VDG S+WS + EC+ SCG G + R R+C NP Q+GG CE G E C I+ CPV+G + AW + CS+SCG G Q + R C++P PA GG+ C+G + CN CP++GKW ++ S+ +CS +CGGG++ R+R C++P P+ GG +C GS QS CN+ C
Sbjct: 4582 PCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCE--GNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 3 Score: 133.65 bits (335), Expect = 3.329e-32 Identity = 77/172 (44.77%), Postives = 106/172 (61.63%), Query Frame = 2
Query: 602 VDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGKYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAACEGPAEDERACNTNGCPVNGKWXXXXXXXXXXXXXXXXXXXXXXXCNNPAPKNGGSQCSGSATQSATCNTQAC 1117
+ G + W+ ++ CS SCG GA+ R R C++P+PQ GG CE G +S C CP +G + WS + CS++C GG ++ R CD+P P++GG AC GP + CNT+ CPV+G WGS+ S+ CS +CGGG K+R R C++P P GG C G TQ CN QAC
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCE--GSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 4 Score: 128.257 bits (321), Expect = 1.685e-30 Identity = 77/185 (41.62%), Postives = 108/185 (58.38%), Query Frame = 2
Query: 593 PPKVDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGKYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAACEGPAEDERACNTNGCPVNGKWXXXXXXXXXXXXXXXXXXXXXXXCNNPAPKNGGSQCSGSATQSATCNTQAC-LKSNLCSWY 1144
P V G S W + CS SCG+G + R R C NP P GG+ C+ G ++ Q C + CP++GK+ W+++S CS SCGGG +++TR C P P +GG CEG CN++ CP +G W + +G+CS+TC GG R R+C+NP P NGG C G +Q CNT C + + SW+
Sbjct: 4639 PCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCD--GAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWH 4821 HSP 5 Score: 101.679 bits (252), Expect = 5.538e-22 Identity = 52/124 (41.94%), Postives = 65/124 (52.42%), Query Frame = 2
Query: 578 FASQAPPKVDGGLSKWSEFTECSASCGEGAKFRERSCTNPLPQNGGASCEALGELSESQACKIKECPVNGKYGAWSAYSQCSKSCGGGNQKKTRKCDSPAPAHGGAACEGPAEDERACNTNGCP 949
F + P G S WS + CS +C G R R+C NP P NGG +C G S+ Q C CPV+G +G+W ++SQCS SCGGG + + R CD P P GG C G CN CP
Sbjct: 4748 FCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACG--GPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00070805 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.